Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8113330.1

Orthogroup ID

OG0000433

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 522

Gene Structure 522 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8113330.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ttatttgaggccctggtcttagtgatcagaaccaacggagaagcacaacagaaagccatcaaacaactgtataaccaattgaagttattcgaagacggaatgaaggatttattcccagatgggattcctttgtcggttgacaacaagatcaatgtaggtctactagatgtgctcatgttttctgtctttgattcatatgaggctcatgaacaagtcctcggcataaaggtgatagaccctgagaagacaccagtaatattttcctggattaaagctataaatgagctacctgtggtgaaagagctgcatattcctcatgaaaaagtggtggcatctgtcaagctttttagaaaattggccatgaattcttcttcagatacttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004364 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009404 GO:0009407 GO:0009636 GO:0009987 GO:0016740 GO:0016765 GO:0019748 GO:0034641 GO:0042221 GO:0043603 GO:0044237 GO:0044248 GO:0044424 GO:0044464 GO:0050896 GO:0051186 GO:0071704 GO:0098754 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418

Pfam Domains

Protein Families

GST_C GST_N GST_N_3

Protein Analysis

127

Amino Acids

14.32

Weight (kDa)

5.58

Isoelectric Point (pI)

16.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000433)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62480 AT5G62480 AT5G62480
fragaria_vesca	FvH4_5g15010 FvH4_5g15020 FvH4_5g15100 FvH4_5g15110 FvH4_5g15120 FvH4_5g15121 FvH4_5g15121 FvH4_5g15121
malus_domestica	MD06G1192000.v1.1 MD06G1192100.v1.1
prunus_persica	Prupe.5G191500_v2.0.a1 Prupe.5G191600_v2.0.a1 Prupe.5G191800_v2.0.a1 Prupe.5G192500_v2.0.a1 Prupe.5G192600_v2.0.a1 Prupe.5G192800_v2.0.a1
pyrus_communis	pycom06g17020
rosa_chinensis	RchiOBHm_Chr7g0181061 RchiOBHm_Chr7g0181081 RchiOBHm_Chr7g0181091 RchiOBHm_Chr7g0181101 RchiOBHm_Chr7g0181111 RchiOBHm_Chr7g0181241 RchiOBHm_Chr7g0181251 RchiOBHm_Chr7g0181261
rosa_laevigata	RLG00000005202 RLG00000005203 RLG00000005204 RLG00000005213 RLG00000005214 RLG00000005215 RLG00000005216
rosa_multiflora	Rmu_co8113330.1_g000001 Rmu_co8221866.1_g000001 Rmu_sc0001147.1_g000011 Rmu_sc0001147.1_g000012 Rmu_sc0001147.1_g000013 Rmu_sc0001147.1_g000024 Rmu_sc0001147.1_g000025 Rmu_sc0007079.1_g000005 Rmu_sc0007079.1_g000009 Rmu_sc0007079.1_g000010 Rmu_sc0007079.1_g000011 Rmu_sc0007079.1_g000012 Rmu_sc0015707.1_g000001 Rmu_sc0041900.1_g000001
rosa_roxburghii	Rroxscaffold_3G00272160 Rroxscaffold_3G00272170 Rroxscaffold_3G00272180 Rroxscaffold_3G00272270 Rroxscaffold_3G00272280 Rroxscaffold_3G00272290 Rroxscaffold_3G00272300
rosa_rugosa	Rorug06G0438700 Rorug06G0438700 Rorug06G0438700 Rorug06G0439800 Rorug06G0439900 Rorug06G0440000
rosa_samantha	Rh7AG040100 Rh7AG040200 Rh7AG040300 Rh7AG040400 Rh7AG041500 Rh7AG041600 Rh7AG041700 Rh7BG039500 Rh7BG039600 Rh7BG039800 Rh7BG040800 Rh7CG041300 Rh7CG041400 Rh7CG041600 Rh7CG041700 Rh7CG041800 Rh7CG043000 Rh7CG043100 Rh7CG043200 Rh7DG039700 Rh7DG039900 Rh7DG040000 Rh7DG040100 Rh7DG040200 Rh7DG041300 Rh7DG041400 Rh7DG041500
rosa_wichuraiana	Rw7G003310 Rw7G003320 Rw7G003330 Rw7G003420 Rw7G003430 Rw7G003440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	160
AcoI	YGGCCR	1 cut(s)	357
AcsI	RAATTY	1 cut(s)	364
AcuI	CTGAAG	1 cut(s)	357
AgsI	TTSAA	1 cut(s)	82
AjnI	CCWGG	2 cut(s)	12, 263
AluBI	AGCT	4 cut(s)	275, 286, 304, 343
AluI	AGCT	4 cut(s)	275, 286, 304, 343
Alw21I	GWGCWC	1 cut(s)	174
AoxI	GGCC	2 cut(s)	9, 357
ApeKI	GCWGC	1 cut(s)	304
ApoI	RAATTY	1 cut(s)	364
Asp700I	GAANNNNTTC	1 cut(s)	86
AspS9I	GGNCC	1 cut(s)	10
AsuHPI	GGTGA	2 cut(s)	241, 307
AsuII	TTCGAA	1 cut(s)	90
BalI	TGGCCA	1 cut(s)	359
BbsI	GAAGAC	2 cut(s)	99, 251
Bbv12I	GWGCWC	1 cut(s)	174
BbvI	GCAGC	1 cut(s)	291
BccI	CCATC	2 cut(s)	65, 113
BciT130I	CCWGG	2 cut(s)	14, 265
BclI	TGATCA	1 cut(s)	24
BfaI	CTAG	1 cut(s)	164
BisI	GCNGC	1 cut(s)	305
BlsI	GCNGC	1 cut(s)	306
Bme1390I	CCNGG	2 cut(s)	14, 265
BmgT120I	GGNCC	1 cut(s)	10
BmrFI	CCNGG	2 cut(s)	14, 265
BmsI	GCATC	1 cut(s)	341
BpiI	GAAGAC	2 cut(s)	99, 251
Bpu14I	TTCGAA	1 cut(s)	90
BsaJI	CCNNGG	2 cut(s)	12, 217
Bse1I	ACTGG	1 cut(s)	251
BseBI	CCWGG	2 cut(s)	14, 265
BseDI	CCNNGG	2 cut(s)	12, 217
BseMII	CTCAG	1 cut(s)	231
BseNI	ACTGG	1 cut(s)	251
BseXI	GCAGC	1 cut(s)	291
BshFI	GGCC	2 cut(s)	11, 359
BsiHKAI	GWGCWC	1 cut(s)	174
BsnI	GGCC	2 cut(s)	11, 359
Bsp119I	TTCGAA	1 cut(s)	90
Bsp1286I	GDGCHC	1 cut(s)	174
Bsp143I	GATC	2 cut(s)	24, 147
BspANI	GGCC	2 cut(s)	11, 359
BspCNI	CTCAG	1 cut(s)	232
BspHI	TCATGA	2 cut(s)	205, 316
BspT104I	TTCGAA	1 cut(s)	90
BsrI	ACTGG	1 cut(s)	251
BssECI	CCNNGG	2 cut(s)	12, 217
BssMI	GATC	2 cut(s)	24, 147
Bst2UI	CCWGG	2 cut(s)	14, 265
Bst4CI	ACNGT	1 cut(s)	69
BstBI	TTCGAA	1 cut(s)	90
BstDEI	CTNAG	2 cut(s)	19, 240
BstKTI	GATC	2 cut(s)	27, 150
BstMBI	GATC	2 cut(s)	24, 147
BstNI	CCWGG	2 cut(s)	14, 265
BstSCI	CCNGG	2 cut(s)	12, 263
BstV1I	GCAGC	1 cut(s)	291
BstV2I	GAAGAC	2 cut(s)	99, 251
BsuRI	GGCC	2 cut(s)	11, 359
CciI	TCATGA	2 cut(s)	205, 316
Cfr13I	GGNCC	1 cut(s)	10
CviAII	CATG	4 cut(s)	175, 206, 317, 361
CviJI	RGCY	8 cut(s)	11, 56, 203, 275, 286, 304, 343, 359
CviKI_1	RGCY	8 cut(s)	11, 56, 203, 275, 286, 304, 343, 359
DdeI	CTNAG	2 cut(s)	19, 240
DpnI	GATC	2 cut(s)	26, 149
DpnII	GATC	2 cut(s)	24, 147
EaeI	YGGCCR	1 cut(s)	357
Eco57I	CTGAAG	1 cut(s)	357
EcoO109I	RGGNCCY	1 cut(s)	10
EcoRI	GAATTC	1 cut(s)	364
EcoRII	CCWGG	2 cut(s)	12, 263
FaeI	CATG	4 cut(s)	178, 209, 320, 364
FatI	CATG	4 cut(s)	174, 205, 316, 360
FauNDI	CATATG	1 cut(s)	196
FbaI	TGATCA	1 cut(s)	24
FblI	GTMKAC	1 cut(s)	160
Fnu4HI	GCNGC	1 cut(s)	305
Fsp4HI	GCNGC	1 cut(s)	305
FspBI	CTAG	1 cut(s)	164
GluI	GCNGC	1 cut(s)	305
HaeIII	GGCC	2 cut(s)	11, 359
Hin1II	CATG	4 cut(s)	178, 209, 320, 364
HincII	GTYRAC	1 cut(s)	139
HindII	GTYRAC	1 cut(s)	139
HindIII	AAGCTT	1 cut(s)	341
HinfI	GANTC	2 cut(s)	124, 191
HphI	GGTGA	2 cut(s)	241, 307
Hpy166II	GTNNAC	2 cut(s)	139, 161
Hpy188I	TCNGA	2 cut(s)	29, 376
Hpy188III	TCNNGA	2 cut(s)	206, 317
Hpy8I	GTNNAC	2 cut(s)	139, 161
HpyAV	CCTTC	1 cut(s)	97
HpyCH4III	ACNGT	1 cut(s)	69
HpyCH4V	TGCA	1 cut(s)	307
HpyF3I	CTNAG	2 cut(s)	19, 240
Hsp92II	CATG	4 cut(s)	178, 209, 320, 364
Ksp22I	TGATCA	1 cut(s)	24
Kzo9I	GATC	2 cut(s)	24, 147
LpnPI	CCDG	7 cut(s)	26, 129, 250, 252, 264, 277, 303
Lsp1109I	GCAGC	1 cut(s)	291
LweI	GCATC	1 cut(s)	341
MaeI	CTAG	1 cut(s)	164
MalI	GATC	2 cut(s)	26, 149
MboI	GATC	2 cut(s)	24, 147
MboII	GAAGA	4 cut(s)	104, 256, 360, 363
MfeI	CAATTG	1 cut(s)	77
MhlI	GDGCHC	1 cut(s)	174
MlsI	TGGCCA	1 cut(s)	359
MluCI	AATT	3 cut(s)	77, 353, 364
MluNI	TGGCCA	1 cut(s)	359
MnlI	CCTC	3 cut(s)	193, 227, 324
Mox20I	TGGCCA	1 cut(s)	359
MroXI	GAANNNNTTC	1 cut(s)	86
MscI	TGGCCA	1 cut(s)	359
MseI	TTAA	1 cut(s)	270
MslI	CAYNNNNRTG	1 cut(s)	227
Msp20I	TGGCCA	1 cut(s)	359
MspR9I	CCNGG	2 cut(s)	14, 265
MunI	CAATTG	1 cut(s)	77
MvaI	CCWGG	2 cut(s)	14, 265
NdeI	CATATG	1 cut(s)	196
NdeII	GATC	2 cut(s)	24, 147
NlaIII	CATG	4 cut(s)	178, 209, 320, 364
NmeAIII	GCCGAG	1 cut(s)	198
NspV	TTCGAA	1 cut(s)	90
PagI	TCATGA	2 cut(s)	205, 316
PdmI	GAANNNNTTC	1 cut(s)	86
PfeI	GAWTC	2 cut(s)	124, 191
PfoI	TCCNGGA	1 cut(s)	263
PkrI	GCNGC	1 cut(s)	306
Psp6I	CCWGG	2 cut(s)	12, 263
PspGI	CCWGG	2 cut(s)	12, 263
PspPI	GGNCC	1 cut(s)	10
RseI	CAYNNNNRTG	1 cut(s)	227
SaqAI	TTAA	1 cut(s)	270
SatI	GCNGC	1 cut(s)	305
Sau3AI	GATC	2 cut(s)	24, 147
Sau96I	GGNCC	1 cut(s)	10
ScrFI	CCNGG	2 cut(s)	14, 265
SduI	GDGCHC	1 cut(s)	174
SetI	ASST	7 cut(s)	160, 231, 277, 288, 292, 306, 345
SfaNI	GCATC	1 cut(s)	341
SfuI	TTCGAA	1 cut(s)	90
SmiMI	CAYNNNNRTG	1 cut(s)	227
Sse9I	AATT	3 cut(s)	77, 353, 364
SspI	AATATT	1 cut(s)	258
SspMI	CTAG	1 cut(s)	164
StyD4I	CCNGG	2 cut(s)	12, 263
TaaI	ACNGT	1 cut(s)	69
TaqI	TCGA	1 cut(s)	90
TasI	AATT	3 cut(s)	77, 353, 364
TfiI	GAWTC	2 cut(s)	124, 191
Tru1I	TTAA	1 cut(s)	270
Tru9I	TTAA	1 cut(s)	270
TseI	GCWGC	1 cut(s)	304
TspDTI	ATGAA	5 cut(s)	116, 183, 222, 333, 377
TspGWI	ACGGA	2 cut(s)	51, 111
XapI	RAATTY	1 cut(s)	364
XmiI	GTMKAC	1 cut(s)	160
XmnI	GAANNNNTTC	1 cut(s)	86
XspI	CTAG	1 cut(s)	164

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.