Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000433

Physical Location & Seq

Genomic Coordinates Reverse (-)

2770280 .. 2771840

Gene Structure 1561 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ16151

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGACTCTGAGAGAAATGGCAGAGCAAAACAAGGTGATCCTATACGGAATGTGGACCAGTCCCTATGTTAAGAGGGTGGAATTGGCCCTCAAGGTAAAAGGTATACGCTATGAATATGTGGATGAAGATTTGAGGAACAAAAGTCCATTGCTTCTCGAGTTTAATCCTATTCATAAGAAGGTTCCTGTGATTGTCCACAATGGAAAAGCCATTGTTGAGTGTTTGAGGCATGGTCTTAGTGATCAAAACCATTGGAGAAGCACAAGAGAAAGCCATCAAAGAAGTTCTGAGAAGGTAACATTACTTGAATCCGGACTCCAGGGTTTGTTCCCAGATGGCATTCCTTCAGTAGATGAGTACAGCAAAAATGTGGCATTACTAGATTTGGTAATTCTCGCACACTTTGGCGGATATGAAGCTCAGGAAGAAGTCCTTGGCCTAAAGCTTATTGACTCTGAGAAGACTCCACTGATCCCTGCGGTCAAAGAATCAAGGAATCCTCATGAAAAGGTGGTGGCGTTCCTCAAGTTCTTTAGAGAAAATGCCCTCAAATCTGGGAACAAAAGTCCAATATTGCTCCTTAAGTTCAATTCTATTCATGAGAAGGTTCCTGTACTTGTTCATAATGGGAAAACCATTGCTGAGTCTCTTGTGATCATTGAATATATTGATGACATCAGGACTACTGAACCTCAATTTTTACCAGAAGATCCATATAAGACCCCAAATTCGCTTATGGGTCAGCTATATGCAACAGGTGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004364 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009404 GO:0009407 GO:0009636 GO:0009987 GO:0016740 GO:0016765 GO:0019748 GO:0034641 GO:0042221 GO:0043603 GO:0044237 GO:0044248 GO:0044424 GO:0044464 GO:0050896 GO:0051186 GO:0071704 GO:0098754 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418

Pfam Domains

Protein Families

GST_C GST_N GST_N_3

Protein Analysis

254

Amino Acids

28.87

Weight (kDa)

6.52

Isoelectric Point (pI)

45.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GST_N	PF02798	11 - 73	1.1e-13	Glutathione S-transferase, N-terminal domain
GST_N_3	PF13417	14 - 73	1.6e-12	Glutathione S-transferase, N-terminal domain
GST_N_2	PF13409	19 - 73	3.1e-09	Glutathione S-transferase, N-terminal domain
GST_N	PF02798	185 - 224	4e-08	Glutathione S-transferase, N-terminal domain
GST_N_3	PF13417	194 - 227	1e-06	Glutathione S-transferase, N-terminal domain
GST_N_2	PF13409	200 - 225	8.5e-06	Glutathione S-transferase, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0000433)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62480 AT5G62480 AT5G62480
fragaria_vesca	FvH4_5g15010 FvH4_5g15020 FvH4_5g15100 FvH4_5g15110 FvH4_5g15120 FvH4_5g15121 FvH4_5g15121 FvH4_5g15121
malus_domestica	MD06G1192000.v1.1 MD06G1192100.v1.1
prunus_persica	Prupe.5G191500_v2.0.a1 Prupe.5G191600_v2.0.a1 Prupe.5G191800_v2.0.a1 Prupe.5G192500_v2.0.a1 Prupe.5G192600_v2.0.a1 Prupe.5G192800_v2.0.a1
pyrus_communis	pycom06g17020
rosa_chinensis	RchiOBHm_Chr7g0181061 RchiOBHm_Chr7g0181081 RchiOBHm_Chr7g0181091 RchiOBHm_Chr7g0181101 RchiOBHm_Chr7g0181111 RchiOBHm_Chr7g0181241 RchiOBHm_Chr7g0181251 RchiOBHm_Chr7g0181261
rosa_laevigata	RLG00000005202 RLG00000005203 RLG00000005204 RLG00000005213 RLG00000005214 RLG00000005215 RLG00000005216
rosa_multiflora	Rmu_co8113330.1_g000001 Rmu_co8221866.1_g000001 Rmu_sc0001147.1_g000011 Rmu_sc0001147.1_g000012 Rmu_sc0001147.1_g000013 Rmu_sc0001147.1_g000024 Rmu_sc0001147.1_g000025 Rmu_sc0007079.1_g000005 Rmu_sc0007079.1_g000009 Rmu_sc0007079.1_g000010 Rmu_sc0007079.1_g000011 Rmu_sc0007079.1_g000012 Rmu_sc0015707.1_g000001 Rmu_sc0041900.1_g000001
rosa_roxburghii	Rroxscaffold_3G00272160 Rroxscaffold_3G00272170 Rroxscaffold_3G00272180 Rroxscaffold_3G00272270 Rroxscaffold_3G00272280 Rroxscaffold_3G00272290 Rroxscaffold_3G00272300
rosa_rugosa	Rorug06G0438700 Rorug06G0438700 Rorug06G0438700 Rorug06G0439800 Rorug06G0439900 Rorug06G0440000
rosa_samantha	Rh7AG040100 Rh7AG040200 Rh7AG040300 Rh7AG040400 Rh7AG041500 Rh7AG041600 Rh7AG041700 Rh7BG039500 Rh7BG039600 Rh7BG039800 Rh7BG040800 Rh7CG041300 Rh7CG041400 Rh7CG041600 Rh7CG041700 Rh7CG041800 Rh7CG043000 Rh7CG043100 Rh7CG043200 Rh7DG039700 Rh7DG039900 Rh7DG040000 Rh7DG040100 Rh7DG040200 Rh7DG041300 Rh7DG041400 Rh7DG041500
rosa_wichuraiana	Rw7G003310 Rw7G003320 Rw7G003330 Rw7G003420 Rw7G003430 Rw7G003440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	103
AccIII	TCCGGA	1 cut(s)	311
AciI	CCGC	2 cut(s)	408, 479
AclWI	GGATC	3 cut(s)	31, 466, 704
AcsI	RAATTY	1 cut(s)	727
AcuI	CTGAAG	1 cut(s)	330
AfaI	GTAC	2 cut(s)	359, 615
AflII	CTTAAG	1 cut(s)	581
AgsI	TTSAA	3 cut(s)	308, 589, 662
AjnI	CCWGG	1 cut(s)	318
AjuI	GAANNNNNNNTTGG	2 cut(s)	417, 449
AluBI	AGCT	3 cut(s)	419, 445, 745
AluI	AGCT	3 cut(s)	419, 445, 745
Alw26I	GTCTC	1 cut(s)	651
AlwI	GGATC	3 cut(s)	31, 466, 704
Ama87I	CYCGRG	1 cut(s)	155
Aor13HI	TCCGGA	1 cut(s)	311
AoxI	GGCC	2 cut(s)	84, 436
ApoI	RAATTY	1 cut(s)	727
ArsI	GACNNNNNNTTYG	2 cut(s)	712, 744
AspS9I	GGNCC	2 cut(s)	54, 85
AsuHPI	GGTGA	1 cut(s)	46
AvaI	CYCGRG	1 cut(s)	155
AvaII	GGWCC	1 cut(s)	54
BbsI	GAAGAC	1 cut(s)	467
BccI	CCATC	2 cut(s)	282, 329
BciT130I	CCWGG	1 cut(s)	320
BclI	TGATCA	2 cut(s)	241, 654
BcoDI	GTCTC	1 cut(s)	651
BfaI	CTAG	1 cut(s)	380
BfrI	CTTAAG	1 cut(s)	581
Bme1390I	CCNGG	1 cut(s)	320
Bme18I	GGWCC	1 cut(s)	54
BmeT110I	CYCGRG	1 cut(s)	155
BmgT120I	GGNCC	2 cut(s)	54, 85
BmiI	GGNNCC	2 cut(s)	183, 609
BmrFI	CCNGG	1 cut(s)	320
BpiI	GAAGAC	1 cut(s)	467
BpmI	CTGGAG	1 cut(s)	302
Bpu10I	CCTNAGC	1 cut(s)	420
BpuEI	CTTGAG	2 cut(s)	74, 509
BsaJI	CCNNGG	2 cut(s)	319, 433
BsaWI	WCCGGW	1 cut(s)	311
Bse1I	ACTGG	1 cut(s)	57
Bse3DI	GCAATG	2 cut(s)	146, 636
BseAI	TCCGGA	1 cut(s)	311
BseBI	CCWGG	1 cut(s)	320
BseDI	CCNNGG	2 cut(s)	319, 433
BseGI	GGATG	1 cut(s)	127
BseMI	GCAATG	2 cut(s)	146, 636
BseMII	CTCAG	4 cut(s)	279, 434, 447, 633
BseNI	ACTGG	1 cut(s)	57
BshFI	GGCC	2 cut(s)	86, 438
BsiHKCI	CYCGRG	1 cut(s)	155
BsiSI	CCGG	1 cut(s)	312
BslFI	GGGAC	1 cut(s)	45
BsmAI	GTCTC	1 cut(s)	651
BsmFI	GGGAC	1 cut(s)	45
BsmI	GAATGC	1 cut(s)	339
BsnI	GGCC	2 cut(s)	86, 438
BsoBI	CYCGRG	1 cut(s)	155
Bsp13I	TCCGGA	1 cut(s)	311
Bsp143I	GATC	5 cut(s)	36, 241, 471, 654, 709
BspACI	CCGC	2 cut(s)	408, 479
BspANI	GGCC	2 cut(s)	86, 438
BspCNI	CTCAG	4 cut(s)	280, 433, 448, 634
BspEI	TCCGGA	1 cut(s)	311
BspHI	TCATGA	2 cut(s)	502, 598
BspLI	GGNNCC	2 cut(s)	183, 609
BspPI	GGATC	3 cut(s)	31, 466, 704
BspTI	CTTAAG	1 cut(s)	581
BsrDI	GCAATG	2 cut(s)	146, 636
BsrI	ACTGG	1 cut(s)	57
BssECI	CCNNGG	2 cut(s)	319, 433
BssMI	GATC	5 cut(s)	36, 241, 471, 654, 709
BssNAI	GTATAC	1 cut(s)	104
BssT1I	CCWWGG	1 cut(s)	433
Bst1107I	GTATAC	1 cut(s)	104
Bst2UI	CCWGG	1 cut(s)	320
BstAFI	CTTAAG	1 cut(s)	581
BstDEI	CTNAG	6 cut(s)	8, 236, 288, 420, 456, 642
BstF5I	GGATG	1 cut(s)	127
BstKTI	GATC	5 cut(s)	39, 244, 474, 657, 712
BstMAI	GTCTC	1 cut(s)	651
BstMBI	GATC	5 cut(s)	36, 241, 471, 654, 709
BstNI	CCWGG	1 cut(s)	320
BstSCI	CCNGG	1 cut(s)	318
BstV2I	GAAGAC	1 cut(s)	467
BstX2I	RGATCY	1 cut(s)	709
BstYI	RGATCY	1 cut(s)	709
BstZ17I	GTATAC	1 cut(s)	104
BsuRI	GGCC	2 cut(s)	86, 438
BtsCI	GGATG	1 cut(s)	127
BtsIMutI	CAGTG	1 cut(s)	467
CciI	TCATGA	2 cut(s)	502, 598
Cfr13I	GGNCC	2 cut(s)	54, 85
Csp6I	GTAC	2 cut(s)	358, 614
CviAII	CATG	3 cut(s)	230, 503, 599
CviJI	RGCY	7 cut(s)	86, 209, 273, 419, 438, 445, 745
CviKI_1	RGCY	7 cut(s)	86, 209, 273, 419, 438, 445, 745
CviQI	GTAC	2 cut(s)	358, 614
DdeI	CTNAG	6 cut(s)	8, 236, 288, 420, 456, 642
DpnI	GATC	5 cut(s)	38, 243, 473, 656, 711
DpnII	GATC	5 cut(s)	36, 241, 471, 654, 709
EciI	GGCGGA	1 cut(s)	423
Eco130I	CCWWGG	1 cut(s)	433
Eco47I	GGWCC	1 cut(s)	54
Eco57I	CTGAAG	1 cut(s)	330
Eco88I	CYCGRG	1 cut(s)	155
EcoRII	CCWGG	1 cut(s)	318
EcoT14I	CCWWGG	1 cut(s)	433
ErhI	CCWWGG	1 cut(s)	433
FaeI	CATG	3 cut(s)	233, 506, 602
FalI	AAGNNNNNCTT	2 cut(s)	417, 449
FaqI	GGGAC	1 cut(s)	45
FatI	CATG	3 cut(s)	229, 502, 598
FbaI	TGATCA	2 cut(s)	241, 654
FblI	GTMKAC	1 cut(s)	103
FokI	GGATG	1 cut(s)	134
FspBI	CTAG	1 cut(s)	380
GsuI	CTGGAG	1 cut(s)	302
HaeIII	GGCC	2 cut(s)	86, 438
HapII	CCGG	1 cut(s)	312
Hin1II	CATG	3 cut(s)	233, 506, 602
HindIII	AAGCTT	1 cut(s)	443
HinfI	GANTC	8 cut(s)	4, 308, 315, 452, 463, 488, 496, 644
HpaII	CCGG	1 cut(s)	312
HphI	GGTGA	1 cut(s)	46
Hpy166II	GTNNAC	3 cut(s)	54, 104, 196
Hpy188I	TCNGA	3 cut(s)	9, 289, 457
Hpy188III	TCNNGA	6 cut(s)	155, 312, 422, 503, 599, 679
Hpy8I	GTNNAC	3 cut(s)	54, 104, 196
HpyAV	CCTTC	4 cut(s)	172, 286, 354, 598
HpyCH4V	TGCA	1 cut(s)	752
HpyF3I	CTNAG	6 cut(s)	8, 236, 288, 420, 456, 642
Hsp92II	CATG	3 cut(s)	233, 506, 602
Kpn2I	TCCGGA	1 cut(s)	311
Ksp22I	TGATCA	2 cut(s)	241, 654
Kzo9I	GATC	5 cut(s)	36, 241, 471, 654, 709
LmnI	GCTCC	1 cut(s)	582
MaeI	CTAG	1 cut(s)	380
MaeIII	GTNAC	1 cut(s)	295
MalI	GATC	5 cut(s)	38, 243, 473, 656, 711
MboI	GATC	5 cut(s)	36, 241, 471, 654, 709
MboII	GAAGA	4 cut(s)	137, 437, 472, 719
MflI	RGATCY	1 cut(s)	709
MluCI	AATT	5 cut(s)	80, 390, 589, 695, 727
MlyI	GAGTC	4 cut(s)	309, 446, 457, 653
MnlI	CCTC	8 cut(s)	66, 98, 126, 219, 510, 533, 557, 702
MroI	TCCGGA	1 cut(s)	311
MseI	TTAA	3 cut(s)	69, 162, 582
MspCI	CTTAAG	1 cut(s)	581
MspI	CCGG	1 cut(s)	312
MspR9I	CCNGG	1 cut(s)	320
Mva1269I	GAATGC	1 cut(s)	339
MvaI	CCWGG	1 cut(s)	320
NdeII	GATC	5 cut(s)	36, 241, 471, 654, 709
NlaIII	CATG	3 cut(s)	233, 506, 602
NlaIV	GGNNCC	2 cut(s)	183, 609
PaeR7I	CTCGAG	1 cut(s)	155
PagI	TCATGA	2 cut(s)	502, 598
PctI	GAATGC	1 cut(s)	339
PfeI	GAWTC	3 cut(s)	308, 488, 496
PleI	GAGTC	4 cut(s)	309, 446, 457, 652
PpsI	GAGTC	4 cut(s)	309, 446, 457, 652
Psp6I	CCWGG	1 cut(s)	318
PspGI	CCWGG	1 cut(s)	318
PspN4I	GGNNCC	2 cut(s)	183, 609
PspPI	GGNCC	2 cut(s)	54, 85
PsuI	RGATCY	1 cut(s)	709
RsaI	GTAC	2 cut(s)	359, 615
RsaNI	GTAC	2 cut(s)	358, 614
SaqAI	TTAA	3 cut(s)	69, 162, 582
Sau3AI	GATC	5 cut(s)	36, 241, 471, 654, 709
Sau96I	GGNCC	2 cut(s)	54, 85
SchI	GAGTC	4 cut(s)	309, 446, 457, 653
ScrFI	CCNGG	1 cut(s)	320
Sfr274I	CTCGAG	1 cut(s)	155
SinI	GGWCC	1 cut(s)	54
SlaI	CTCGAG	1 cut(s)	155
SmlI	CTYRAG	4 cut(s)	89, 155, 524, 581
SmoI	CTYRAG	4 cut(s)	89, 155, 524, 581
Sse9I	AATT	5 cut(s)	80, 390, 589, 695, 727
SsiI	CCGC	2 cut(s)	408, 479
SspI	AATATT	1 cut(s)	573
SspMI	CTAG	1 cut(s)	380
StyD4I	CCNGG	1 cut(s)	318
StyI	CCWWGG	1 cut(s)	433
TaqI	TCGA	1 cut(s)	156
TasI	AATT	5 cut(s)	80, 390, 589, 695, 727
TatI	WGTACW	2 cut(s)	357, 613
TfiI	GAWTC	3 cut(s)	308, 488, 496
Tru1I	TTAA	3 cut(s)	69, 162, 582
Tru9I	TTAA	3 cut(s)	69, 162, 582
TscAI	CASTG	1 cut(s)	474
TspDTI	ATGAA	7 cut(s)	126, 138, 161, 429, 519, 587, 611
TspGWI	ACGGA	1 cut(s)	60
TspRI	CASTG	1 cut(s)	474
Vha464I	CTTAAG	1 cut(s)	581
VpaK11BI	GGWCC	1 cut(s)	54
XapI	RAATTY	1 cut(s)	727
XhoI	CTCGAG	1 cut(s)	155
XmiI	GTMKAC	1 cut(s)	103
XspI	CTAG	1 cut(s)	380

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.