Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0000433

Physical Location & Seq

Genomic Coordinates Reverse (-)

2954964 .. 2965707

Gene Structure 10744 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG040200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGCAACAGAAACTTTTATTTGAGGCCCTGGTCTTAGTGATCAGAACCAACGGAGAAGCACAACAGAAAGCCATCAAACAACTGTATAACCAATTGAAGTTATTCGAAGACGGAATGAAGGATTTATTCCCAGATGGGATTCCTTTGTCGGTTGACAACAAGATCAATGTAGGTCTACTAGATGTGCTCATGTTTTCTGTCTTTGATTCATATGAGGCTCATGAACAAGTCCTCGGCATAAAGGTGATAGACCCTGAGAAGACACCAGTAATATTTTCCTGGATTAAAGCTATAAATGAGCTACCTGTGGTGAAAGAGCTGCATATTCCTCATGAAAAAGTGGTGGCATCTGTCAAGCTTTTTAGAAAATTGGCCATGAATTCTTCTTCAGATACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004364 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009404 GO:0009407 GO:0009636 GO:0009987 GO:0016740 GO:0016765 GO:0019748 GO:0034641 GO:0042221 GO:0043603 GO:0044237 GO:0044248 GO:0044424 GO:0044464 GO:0050896 GO:0051186 GO:0071704 GO:0098754 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418

Pfam Domains

Protein Families

GST_C GST_N GST_N_3

Protein Analysis

132

Amino Acids

14.95

Weight (kDa)

5.9

Isoelectric Point (pI)

16.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000433)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62480 AT5G62480 AT5G62480
fragaria_vesca	FvH4_5g15010 FvH4_5g15020 FvH4_5g15100 FvH4_5g15110 FvH4_5g15120 FvH4_5g15121 FvH4_5g15121 FvH4_5g15121
malus_domestica	MD06G1192000.v1.1 MD06G1192100.v1.1
prunus_persica	Prupe.5G191500_v2.0.a1 Prupe.5G191600_v2.0.a1 Prupe.5G191800_v2.0.a1 Prupe.5G192500_v2.0.a1 Prupe.5G192600_v2.0.a1 Prupe.5G192800_v2.0.a1
pyrus_communis	pycom06g17020
rosa_chinensis	RchiOBHm_Chr7g0181061 RchiOBHm_Chr7g0181081 RchiOBHm_Chr7g0181091 RchiOBHm_Chr7g0181101 RchiOBHm_Chr7g0181111 RchiOBHm_Chr7g0181241 RchiOBHm_Chr7g0181251 RchiOBHm_Chr7g0181261
rosa_laevigata	RLG00000005202 RLG00000005203 RLG00000005204 RLG00000005213 RLG00000005214 RLG00000005215 RLG00000005216
rosa_multiflora	Rmu_co8113330.1_g000001 Rmu_co8221866.1_g000001 Rmu_sc0001147.1_g000011 Rmu_sc0001147.1_g000012 Rmu_sc0001147.1_g000013 Rmu_sc0001147.1_g000024 Rmu_sc0001147.1_g000025 Rmu_sc0007079.1_g000005 Rmu_sc0007079.1_g000009 Rmu_sc0007079.1_g000010 Rmu_sc0007079.1_g000011 Rmu_sc0007079.1_g000012 Rmu_sc0015707.1_g000001 Rmu_sc0041900.1_g000001
rosa_roxburghii	Rroxscaffold_3G00272160 Rroxscaffold_3G00272170 Rroxscaffold_3G00272180 Rroxscaffold_3G00272270 Rroxscaffold_3G00272280 Rroxscaffold_3G00272290 Rroxscaffold_3G00272300
rosa_rugosa	Rorug06G0438700 Rorug06G0438700 Rorug06G0438700 Rorug06G0439800 Rorug06G0439900 Rorug06G0440000
rosa_samantha	Rh7AG040100 Rh7AG040200 Rh7AG040300 Rh7AG040400 Rh7AG041500 Rh7AG041600 Rh7AG041700 Rh7BG039500 Rh7BG039600 Rh7BG039800 Rh7BG040800 Rh7CG041300 Rh7CG041400 Rh7CG041600 Rh7CG041700 Rh7CG041800 Rh7CG043000 Rh7CG043100 Rh7CG043200 Rh7DG039700 Rh7DG039900 Rh7DG040000 Rh7DG040100 Rh7DG040200 Rh7DG041300 Rh7DG041400 Rh7DG041500
rosa_wichuraiana	Rw7G003310 Rw7G003320 Rw7G003330 Rw7G003420 Rw7G003430 Rw7G003440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	175
AcoI	YGGCCR	1 cut(s)	372
AcsI	RAATTY	1 cut(s)	379
AcuI	CTGAAG	1 cut(s)	372
AgsI	TTSAA	1 cut(s)	97
AjnI	CCWGG	2 cut(s)	27, 278
AluBI	AGCT	4 cut(s)	290, 301, 319, 358
AluI	AGCT	4 cut(s)	290, 301, 319, 358
Alw21I	GWGCWC	1 cut(s)	189
AoxI	GGCC	2 cut(s)	24, 372
ApeKI	GCWGC	1 cut(s)	319
ApoI	RAATTY	1 cut(s)	379
Asp700I	GAANNNNTTC	1 cut(s)	101
AspS9I	GGNCC	1 cut(s)	25
AsuHPI	GGTGA	2 cut(s)	256, 322
AsuII	TTCGAA	1 cut(s)	105
BalI	TGGCCA	1 cut(s)	374
BbsI	GAAGAC	2 cut(s)	114, 266
Bbv12I	GWGCWC	1 cut(s)	189
BbvI	GCAGC	1 cut(s)	306
BccI	CCATC	2 cut(s)	80, 128
BciT130I	CCWGG	2 cut(s)	29, 280
BclI	TGATCA	1 cut(s)	39
BfaI	CTAG	1 cut(s)	179
BisI	GCNGC	1 cut(s)	320
BlsI	GCNGC	1 cut(s)	321
Bme1390I	CCNGG	2 cut(s)	29, 280
BmgT120I	GGNCC	1 cut(s)	25
BmrFI	CCNGG	2 cut(s)	29, 280
BmsI	GCATC	1 cut(s)	356
BpiI	GAAGAC	2 cut(s)	114, 266
Bpu14I	TTCGAA	1 cut(s)	105
BsaJI	CCNNGG	2 cut(s)	27, 232
Bse1I	ACTGG	1 cut(s)	266
BseBI	CCWGG	2 cut(s)	29, 280
BseDI	CCNNGG	2 cut(s)	27, 232
BseMII	CTCAG	1 cut(s)	246
BseNI	ACTGG	1 cut(s)	266
BseXI	GCAGC	1 cut(s)	306
BshFI	GGCC	2 cut(s)	26, 374
BsiHKAI	GWGCWC	1 cut(s)	189
BsnI	GGCC	2 cut(s)	26, 374
Bsp119I	TTCGAA	1 cut(s)	105
Bsp1286I	GDGCHC	1 cut(s)	189
Bsp143I	GATC	2 cut(s)	39, 162
BspANI	GGCC	2 cut(s)	26, 374
BspCNI	CTCAG	1 cut(s)	247
BspHI	TCATGA	2 cut(s)	220, 331
BspT104I	TTCGAA	1 cut(s)	105
BsrI	ACTGG	1 cut(s)	266
BssECI	CCNNGG	2 cut(s)	27, 232
BssMI	GATC	2 cut(s)	39, 162
Bst2UI	CCWGG	2 cut(s)	29, 280
Bst4CI	ACNGT	1 cut(s)	84
BstBI	TTCGAA	1 cut(s)	105
BstDEI	CTNAG	2 cut(s)	34, 255
BstKTI	GATC	2 cut(s)	42, 165
BstMBI	GATC	2 cut(s)	39, 162
BstNI	CCWGG	2 cut(s)	29, 280
BstSCI	CCNGG	2 cut(s)	27, 278
BstV1I	GCAGC	1 cut(s)	306
BstV2I	GAAGAC	2 cut(s)	114, 266
BsuRI	GGCC	2 cut(s)	26, 374
CciI	TCATGA	2 cut(s)	220, 331
Cfr13I	GGNCC	1 cut(s)	25
CviAII	CATG	4 cut(s)	190, 221, 332, 376
CviJI	RGCY	8 cut(s)	26, 71, 218, 290, 301, 319, 358, 374
CviKI_1	RGCY	8 cut(s)	26, 71, 218, 290, 301, 319, 358, 374
DdeI	CTNAG	2 cut(s)	34, 255
DpnI	GATC	2 cut(s)	41, 164
DpnII	GATC	2 cut(s)	39, 162
EaeI	YGGCCR	1 cut(s)	372
Eco57I	CTGAAG	1 cut(s)	372
EcoO109I	RGGNCCY	1 cut(s)	25
EcoRI	GAATTC	1 cut(s)	379
EcoRII	CCWGG	2 cut(s)	27, 278
FaeI	CATG	4 cut(s)	193, 224, 335, 379
FatI	CATG	4 cut(s)	189, 220, 331, 375
FauNDI	CATATG	1 cut(s)	211
FbaI	TGATCA	1 cut(s)	39
FblI	GTMKAC	1 cut(s)	175
Fnu4HI	GCNGC	1 cut(s)	320
Fsp4HI	GCNGC	1 cut(s)	320
FspBI	CTAG	1 cut(s)	179
GluI	GCNGC	1 cut(s)	320
HaeIII	GGCC	2 cut(s)	26, 374
Hin1II	CATG	4 cut(s)	193, 224, 335, 379
HincII	GTYRAC	1 cut(s)	154
HindII	GTYRAC	1 cut(s)	154
HindIII	AAGCTT	1 cut(s)	356
HinfI	GANTC	2 cut(s)	139, 206
HphI	GGTGA	2 cut(s)	256, 322
Hpy166II	GTNNAC	2 cut(s)	154, 176
Hpy188I	TCNGA	2 cut(s)	44, 391
Hpy188III	TCNNGA	2 cut(s)	221, 332
Hpy8I	GTNNAC	2 cut(s)	154, 176
HpyAV	CCTTC	1 cut(s)	112
HpyCH4III	ACNGT	1 cut(s)	84
HpyCH4V	TGCA	2 cut(s)	4, 322
HpyF3I	CTNAG	2 cut(s)	34, 255
Hsp92II	CATG	4 cut(s)	193, 224, 335, 379
Ksp22I	TGATCA	1 cut(s)	39
Kzo9I	GATC	2 cut(s)	39, 162
LpnPI	CCDG	8 cut(s)	14, 41, 144, 265, 267, 279, 292, 318
Lsp1109I	GCAGC	1 cut(s)	306
LweI	GCATC	1 cut(s)	356
MaeI	CTAG	1 cut(s)	179
MalI	GATC	2 cut(s)	41, 164
MboI	GATC	2 cut(s)	39, 162
MboII	GAAGA	4 cut(s)	119, 271, 375, 378
MfeI	CAATTG	1 cut(s)	92
MhlI	GDGCHC	1 cut(s)	189
MlsI	TGGCCA	1 cut(s)	374
MluCI	AATT	3 cut(s)	92, 368, 379
MluNI	TGGCCA	1 cut(s)	374
MnlI	CCTC	4 cut(s)	16, 208, 242, 339
Mox20I	TGGCCA	1 cut(s)	374
MroXI	GAANNNNTTC	1 cut(s)	101
MscI	TGGCCA	1 cut(s)	374
MseI	TTAA	1 cut(s)	285
MslI	CAYNNNNRTG	1 cut(s)	242
Msp20I	TGGCCA	1 cut(s)	374
MspR9I	CCNGG	2 cut(s)	29, 280
MunI	CAATTG	1 cut(s)	92
MvaI	CCWGG	2 cut(s)	29, 280
NdeI	CATATG	1 cut(s)	211
NdeII	GATC	2 cut(s)	39, 162
NlaIII	CATG	4 cut(s)	193, 224, 335, 379
NmeAIII	GCCGAG	1 cut(s)	213
NspV	TTCGAA	1 cut(s)	105
PagI	TCATGA	2 cut(s)	220, 331
PdmI	GAANNNNTTC	1 cut(s)	101
PfeI	GAWTC	2 cut(s)	139, 206
PfoI	TCCNGGA	1 cut(s)	278
PkrI	GCNGC	1 cut(s)	321
Psp6I	CCWGG	2 cut(s)	27, 278
PspGI	CCWGG	2 cut(s)	27, 278
PspPI	GGNCC	1 cut(s)	25
RseI	CAYNNNNRTG	1 cut(s)	242
SaqAI	TTAA	1 cut(s)	285
SatI	GCNGC	1 cut(s)	320
Sau3AI	GATC	2 cut(s)	39, 162
Sau96I	GGNCC	1 cut(s)	25
ScrFI	CCNGG	2 cut(s)	29, 280
SduI	GDGCHC	1 cut(s)	189
SetI	ASST	7 cut(s)	175, 246, 292, 303, 307, 321, 360
SfaNI	GCATC	1 cut(s)	356
SfuI	TTCGAA	1 cut(s)	105
SmiMI	CAYNNNNRTG	1 cut(s)	242
Sse9I	AATT	3 cut(s)	92, 368, 379
SspI	AATATT	1 cut(s)	273
SspMI	CTAG	1 cut(s)	179
StyD4I	CCNGG	2 cut(s)	27, 278
TaaI	ACNGT	1 cut(s)	84
TaqI	TCGA	1 cut(s)	105
TasI	AATT	3 cut(s)	92, 368, 379
TfiI	GAWTC	2 cut(s)	139, 206
Tru1I	TTAA	1 cut(s)	285
Tru9I	TTAA	1 cut(s)	285
TseI	GCWGC	1 cut(s)	319
TspDTI	ATGAA	5 cut(s)	131, 198, 237, 348, 392
TspGWI	ACGGA	2 cut(s)	66, 126
XapI	RAATTY	1 cut(s)	379
XmiI	GTMKAC	1 cut(s)	175
XmnI	GAANNNNTTC	1 cut(s)	101
XspI	CTAG	1 cut(s)	179

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.