Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0000433

Physical Location & Seq

Genomic Coordinates Forward (+)

8509439 .. 8510650

Gene Structure 1212 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g15010.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGGCAGAAGAAAATGTGGTGAGTCTACATGGAACGTGGGCTAGTCCTTTCTCCAAGTGTGTAGAGCTGGCCTTGAAAACCAAAGGCATTCCCTTTGAGTTTGTTGAAGAAGATTTGAGGAACAAGAGTCCATCACTCCTCAAATACAATCCGGTTCACAAAAAGGTTCCAGTACTTGTTCACAATGGAAAGCCCATTGCTGAATCACTCGTCATTCTTGAATACATTGATGAAACATGGAAAACCGGTCCTAAGCTTCTGCTGGAGGATCCTTACAAGAGGGCTCAAGTTCGCTTCTGGGCTGGCTATCTCCAACAACATTTATTTGTGACTATGTCCCTGGTGTGCAAATCTGATGGAGAAGTACAAGAGAAGGCCATCAAGGAATTGTTTGAGAAATTAAAGACATTTGAAGAGGGAATCAAGGACTTATTCCCAGACGGTGCGCCTTCTATTGACTGCAGTAACAATCTGGGGCTTCTGGACATTGTATTGTGTTCACAATTTGGCCCTCATAAAGTTCAAGAAGAAGTGCTTGGTATAACAACTATTGACCCAGAGAAAAACCCACTCTTGTTTACTTGGCTGAAATCTCTGAATGAGCTGCCTCTGGTGAAAGAGTTAACTCCTCCGCATGAGAAGCTAGTAGCAGTTCTTCACTTCTTCAGAAACTATGCCCTCAAATCTAGTGCTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004364 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009404 GO:0009407 GO:0009636 GO:0009987 GO:0016740 GO:0016765 GO:0019748 GO:0034641 GO:0042221 GO:0043603 GO:0044237 GO:0044248 GO:0044424 GO:0044464 GO:0050896 GO:0051186 GO:0071704 GO:0098754 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418

Pfam Domains

Protein Families

GST_C GST_N GST_N_3

Protein Analysis

233

Amino Acids

26.24

Weight (kDa)

6.0

Isoelectric Point (pI)

34.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GST_N	PF02798	7 - 78	3.6e-19	Glutathione S-transferase, N-terminal domain
GST_N_3	PF13417	9 - 79	3.8e-16	Glutathione S-transferase, N-terminal domain
GST_N_2	PF13409	14 - 79	1.6e-15	Glutathione S-transferase, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000433)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62480 AT5G62480 AT5G62480
fragaria_vesca	FvH4_5g15010 FvH4_5g15020 FvH4_5g15100 FvH4_5g15110 FvH4_5g15120 FvH4_5g15121 FvH4_5g15121 FvH4_5g15121
malus_domestica	MD06G1192000.v1.1 MD06G1192100.v1.1
prunus_persica	Prupe.5G191500_v2.0.a1 Prupe.5G191600_v2.0.a1 Prupe.5G191800_v2.0.a1 Prupe.5G192500_v2.0.a1 Prupe.5G192600_v2.0.a1 Prupe.5G192800_v2.0.a1
pyrus_communis	pycom06g17020
rosa_chinensis	RchiOBHm_Chr7g0181061 RchiOBHm_Chr7g0181081 RchiOBHm_Chr7g0181091 RchiOBHm_Chr7g0181101 RchiOBHm_Chr7g0181111 RchiOBHm_Chr7g0181241 RchiOBHm_Chr7g0181251 RchiOBHm_Chr7g0181261
rosa_laevigata	RLG00000005202 RLG00000005203 RLG00000005204 RLG00000005213 RLG00000005214 RLG00000005215 RLG00000005216
rosa_multiflora	Rmu_co8113330.1_g000001 Rmu_co8221866.1_g000001 Rmu_sc0001147.1_g000011 Rmu_sc0001147.1_g000012 Rmu_sc0001147.1_g000013 Rmu_sc0001147.1_g000024 Rmu_sc0001147.1_g000025 Rmu_sc0007079.1_g000005 Rmu_sc0007079.1_g000009 Rmu_sc0007079.1_g000010 Rmu_sc0007079.1_g000011 Rmu_sc0007079.1_g000012 Rmu_sc0015707.1_g000001 Rmu_sc0041900.1_g000001
rosa_roxburghii	Rroxscaffold_3G00272160 Rroxscaffold_3G00272170 Rroxscaffold_3G00272180 Rroxscaffold_3G00272270 Rroxscaffold_3G00272280 Rroxscaffold_3G00272290 Rroxscaffold_3G00272300
rosa_rugosa	Rorug06G0438700 Rorug06G0438700 Rorug06G0438700 Rorug06G0439800 Rorug06G0439900 Rorug06G0440000
rosa_samantha	Rh7AG040100 Rh7AG040200 Rh7AG040300 Rh7AG040400 Rh7AG041500 Rh7AG041600 Rh7AG041700 Rh7BG039500 Rh7BG039600 Rh7BG039800 Rh7BG040800 Rh7CG041300 Rh7CG041400 Rh7CG041600 Rh7CG041700 Rh7CG041800 Rh7CG043000 Rh7CG043100 Rh7CG043200 Rh7DG039700 Rh7DG039900 Rh7DG040000 Rh7DG040100 Rh7DG040200 Rh7DG041300 Rh7DG041400 Rh7DG041500
rosa_wichuraiana	Rw7G003310 Rw7G003320 Rw7G003330 Rw7G003420 Rw7G003430 Rw7G003440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	25
AciI	CCGC	1 cut(s)	632
AclWI	GGATC	2 cut(s)	263, 276
AcuI	CTGAAG	1 cut(s)	649
AfaI	GTAC	2 cut(s)	174, 366
AgeI	ACCGGT	1 cut(s)	245
AgsI	TTSAA	5 cut(s)	76, 107, 221, 413, 524
AjnI	CCWGG	1 cut(s)	339
AjuI	GAANNNNNNNTTGG	2 cut(s)	519, 551
AluBI	AGCT	4 cut(s)	67, 256, 604, 643
AluI	AGCT	4 cut(s)	67, 256, 604, 643
AlwI	GGATC	2 cut(s)	263, 276
AoxI	GGCC	3 cut(s)	69, 375, 508
ApeKI	GCWGC	2 cut(s)	604, 692
AsiGI	ACCGGT	1 cut(s)	245
AspLEI	GCGC	1 cut(s)	448
AspS9I	GGNCC	2 cut(s)	248, 509
AsuHPI	GGTGA	2 cut(s)	31, 625
AvaII	GGWCC	1 cut(s)	248
BamHI	GGATCC	1 cut(s)	268
BanII	GRGCYC	1 cut(s)	286
BarI	GAAGNNNNNNTAC	2 cut(s)	639, 671
BbvI	GCAGC	2 cut(s)	591, 679
BccI	CCATC	3 cut(s)	139, 350, 386
BciT130I	CCWGG	1 cut(s)	341
BfaI	CTAG	3 cut(s)	42, 644, 687
BfmI	CTRYAG	1 cut(s)	460
BisI	GCNGC	2 cut(s)	605, 693
BlsI	GCNGC	2 cut(s)	606, 694
BmcAI	AGTACT	1 cut(s)	174
Bme1390I	CCNGG	1 cut(s)	341
Bme18I	GGWCC	1 cut(s)	248
BmgT120I	GGNCC	2 cut(s)	248, 509
BmiI	GGNNCC	2 cut(s)	168, 270
BmrFI	CCNGG	1 cut(s)	341
BpmI	CTGGAG	1 cut(s)	284
Bpu10I	CCTNAGC	1 cut(s)	252
BpuEI	CTTGAG	1 cut(s)	270
BsaJI	CCNNGG	1 cut(s)	339
BsaWI	WCCGGW	2 cut(s)	151, 245
Bse118I	RCCGGY	1 cut(s)	245
Bse1I	ACTGG	1 cut(s)	170
Bse3DI	GCAATG	1 cut(s)	195
BseBI	CCWGG	1 cut(s)	341
BseDI	CCNNGG	1 cut(s)	339
BseMI	GCAATG	1 cut(s)	195
BseNI	ACTGG	1 cut(s)	170
BseRI	GAGGAG	2 cut(s)	128, 618
BseXI	GCAGC	2 cut(s)	591, 679
BshFI	GGCC	3 cut(s)	71, 377, 510
BshTI	ACCGGT	1 cut(s)	245
BsiSI	CCGG	2 cut(s)	152, 246
BslFI	GGGAC	1 cut(s)	322
BsmFI	GGGAC	1 cut(s)	322
BsmI	GAATGC	1 cut(s)	87
BsnI	GGCC	3 cut(s)	71, 377, 510
Bsp1286I	GDGCHC	1 cut(s)	286
Bsp143I	GATC	1 cut(s)	268
BspACI	CCGC	1 cut(s)	632
BspANI	GGCC	3 cut(s)	71, 377, 510
BspLI	GGNNCC	2 cut(s)	168, 270
BspMAI	CTGCAG	1 cut(s)	464
BspPI	GGATC	2 cut(s)	263, 276
BsrDI	GCAATG	1 cut(s)	195
BsrFI	RCCGGY	1 cut(s)	245
BsrI	ACTGG	1 cut(s)	170
BssAI	RCCGGY	1 cut(s)	245
BssECI	CCNNGG	1 cut(s)	339
BssMI	GATC	1 cut(s)	268
Bst2UI	CCWGG	1 cut(s)	341
Bst4CI	ACNGT	1 cut(s)	443
Bst6I	CTCTTC	1 cut(s)	408
BstC8I	GCNNGC	2 cut(s)	69, 304
BstDEI	CTNAG	1 cut(s)	252
BstHHI	GCGC	1 cut(s)	448
BstKTI	GATC	1 cut(s)	271
BstMBI	GATC	1 cut(s)	268
BstMWI	GCNNNNNNNGC	1 cut(s)	640
BstNI	CCWGG	1 cut(s)	341
BstSCI	CCNGG	1 cut(s)	339
BstSFI	CTRYAG	1 cut(s)	460
BstV1I	GCAGC	2 cut(s)	591, 679
BstX2I	RGATCY	1 cut(s)	268
BstYI	RGATCY	1 cut(s)	268
BsuRI	GGCC	3 cut(s)	71, 377, 510
Cac8I	GCNNGC	2 cut(s)	69, 304
CfoI	GCGC	1 cut(s)	448
Cfr10I	RCCGGY	1 cut(s)	245
Cfr13I	GGNCC	2 cut(s)	248, 509
Csp6I	GTAC	2 cut(s)	173, 365
CspAI	ACCGGT	1 cut(s)	245
CviAII	CATG	3 cut(s)	29, 237, 635
CviQI	GTAC	2 cut(s)	173, 365
DdeI	CTNAG	1 cut(s)	252
DpnI	GATC	1 cut(s)	270
DpnII	GATC	1 cut(s)	268
Eam1104I	CTCTTC	1 cut(s)	408
EarI	CTCTTC	1 cut(s)	408
Eco24I	GRGCYC	1 cut(s)	286
Eco47I	GGWCC	1 cut(s)	248
Eco57I	CTGAAG	1 cut(s)	649
EcoRII	CCWGG	1 cut(s)	339
EcoT38I	GRGCYC	1 cut(s)	286
FaeI	CATG	3 cut(s)	32, 240, 638
FaiI	YATR	7 cut(s)	30, 238, 335, 516, 542, 636, 675
FalI	AAGNNNNNCTT	2 cut(s)	519, 551
FaqI	GGGAC	1 cut(s)	322
FatI	CATG	3 cut(s)	28, 236, 634
FblI	GTMKAC	1 cut(s)	25
Fnu4HI	GCNGC	2 cut(s)	605, 693
FriOI	GRGCYC	1 cut(s)	286
Fsp4HI	GCNGC	2 cut(s)	605, 693
FspBI	CTAG	3 cut(s)	42, 644, 687
GlaI	GCGC	1 cut(s)	447
GluI	GCNGC	2 cut(s)	605, 693
GsuI	CTGGAG	1 cut(s)	284
HaeIII	GGCC	3 cut(s)	71, 377, 510
HapII	CCGG	2 cut(s)	152, 246
HhaI	GCGC	1 cut(s)	448
Hin1II	CATG	3 cut(s)	32, 240, 638
Hin6I	GCGC	1 cut(s)	446
HinP1I	GCGC	1 cut(s)	446
HincII	GTYRAC	1 cut(s)	624
HindII	GTYRAC	1 cut(s)	624
HindIII	AAGCTT	1 cut(s)	254
HinfI	GANTC	4 cut(s)	22, 127, 203, 420
HpaI	GTTAAC	1 cut(s)	624
HpaII	CCGG	2 cut(s)	152, 246
HphI	GGTGA	2 cut(s)	31, 625
Hpy166II	GTNNAC	6 cut(s)	26, 157, 181, 500, 579, 624
Hpy188I	TCNGA	3 cut(s)	355, 597, 668
Hpy188III	TCNNGA	3 cut(s)	218, 482, 524
Hpy8I	GTNNAC	6 cut(s)	26, 157, 181, 500, 579, 624
HpyAV	CCTTC	2 cut(s)	367, 459
HpyCH4III	ACNGT	1 cut(s)	443
HpyCH4IV	ACGT	1 cut(s)	35
HpyCH4V	TGCA	2 cut(s)	348, 462
HpyF10VI	GCNNNNNNNGC	1 cut(s)	640
HpyF3I	CTNAG	1 cut(s)	252
HpySE526I	ACGT	1 cut(s)	35
Hsp92II	CATG	3 cut(s)	32, 240, 638
HspAI	GCGC	1 cut(s)	446
KspAI	GTTAAC	1 cut(s)	624
Kzo9I	GATC	1 cut(s)	268
Lsp1109I	GCAGC	2 cut(s)	591, 679
MaeI	CTAG	3 cut(s)	42, 644, 687
MaeII	ACGT	1 cut(s)	35
MaeIII	GTNAC	2 cut(s)	328, 464
MalI	GATC	1 cut(s)	270
MboI	GATC	1 cut(s)	268
MboII	GAAGA	7 cut(s)	20, 119, 122, 425, 539, 647, 655
MflI	RGATCY	1 cut(s)	268
MhlI	GDGCHC	1 cut(s)	286
MluCI	AATT	3 cut(s)	386, 398, 503
MlyI	GAGTC	2 cut(s)	31, 136
MmeI	TCCRAC	1 cut(s)	337
MnlI	CCTC	9 cut(s)	111, 149, 259, 273, 409, 522, 618, 639, 689
MseI	TTAA	2 cut(s)	401, 623
MspI	CCGG	2 cut(s)	152, 246
MspR9I	CCNGG	1 cut(s)	341
Mva1269I	GAATGC	1 cut(s)	87
MvaI	CCWGG	1 cut(s)	341
MwoI	GCNNNNNNNGC	1 cut(s)	640
NdeII	GATC	1 cut(s)	268
NlaIII	CATG	3 cut(s)	32, 240, 638
NlaIV	GGNNCC	2 cut(s)	168, 270
NmuCI	GTSAC	1 cut(s)	328
PctI	GAATGC	1 cut(s)	87
PfeI	GAWTC	2 cut(s)	203, 420
PflFI	GACNNNGTC	1 cut(s)	334
PinAI	ACCGGT	1 cut(s)	245
PkrI	GCNGC	2 cut(s)	606, 694
PleI	GAGTC	2 cut(s)	30, 135
PpsI	GAGTC	2 cut(s)	30, 135
Psp6I	CCWGG	1 cut(s)	339
PspGI	CCWGG	1 cut(s)	339
PspN4I	GGNNCC	2 cut(s)	168, 270
PspPI	GGNCC	2 cut(s)	248, 509
PstI	CTGCAG	1 cut(s)	464
PsuI	RGATCY	1 cut(s)	268
PsyI	GACNNNGTC	1 cut(s)	334
RsaI	GTAC	2 cut(s)	174, 366
RsaNI	GTAC	2 cut(s)	173, 365
SaqAI	TTAA	2 cut(s)	401, 623
SatI	GCNGC	2 cut(s)	605, 693
Sau3AI	GATC	1 cut(s)	268
Sau96I	GGNCC	2 cut(s)	248, 509
ScaI	AGTACT	1 cut(s)	174
SchI	GAGTC	2 cut(s)	31, 136
ScrFI	CCNGG	1 cut(s)	341
SduI	GDGCHC	1 cut(s)	286
SetI	ASST	6 cut(s)	38, 69, 168, 258, 606, 645
SfcI	CTRYAG	1 cut(s)	460
SinI	GGWCC	1 cut(s)	248
SmlI	CTYRAG	1 cut(s)	285
SmoI	CTYRAG	1 cut(s)	285
Sse9I	AATT	3 cut(s)	386, 398, 503
SsiI	CCGC	1 cut(s)	632
SspMI	CTAG	3 cut(s)	42, 644, 687
StyD4I	CCNGG	1 cut(s)	339
TaaI	ACNGT	1 cut(s)	443
TaiI	ACGT	1 cut(s)	38
TasI	AATT	3 cut(s)	386, 398, 503
TatI	WGTACW	2 cut(s)	172, 364
TfiI	GAWTC	2 cut(s)	203, 420
Tru1I	TTAA	2 cut(s)	401, 623
Tru9I	TTAA	2 cut(s)	401, 623
TseFI	GTSAC	1 cut(s)	328
TseI	GCWGC	2 cut(s)	604, 692
Tsp45I	GTSAC	1 cut(s)	328
TspDTI	ATGAA	1 cut(s)	246
Tth111I	GACNNNGTC	1 cut(s)	334
VpaK11BI	GGWCC	1 cut(s)	248
XmiI	GTMKAC	1 cut(s)	25
XspI	CTAG	3 cut(s)	42, 644, 687
ZrmI	AGTACT	1 cut(s)	174

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.