Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0000433

Physical Location & Seq

Genomic Coordinates Reverse (-)

2734929 .. 2736865

Gene Structure 1937 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G003430.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGGGAGAGGAAAATGTGGTGAGTCTACATGGAATGTGGGCTAGTCCTTTCTCTAAGAGTGTAGAGCTGGCGCTGAAAACCGAAGGCATTCCCTTTGAGTTTGGGTTGGACATGATCCCAACACCATCACTCCTCAAATACAATTCTGTTCACAAAAAGGTTCCTGTACTTGTTCACAATGGAAAGCCTATTGCTGAATCACTAATTATTCTTGAATACATTGATGAAACATGGAAAACTGGTCCTAAGCTTCTGCAGGAGGATCCTTACAAAAGGGCTCAAGTTCGCTTCTGGGCTAGCTTTCTCCAGCAACATGTATTTGAGACTATGTCCCTGTTGTGCAAAACTGATGGAGAAGTACAAGAGAAGGCCATCAAAGAATTGTTTGAGAAATTAAAGACATTTGAAGAGGGAATCAAGGACTTATTCCCAGACGGTGCGCCTTCTATTGACTGCAGCAACAATCTGGGGCTTCTGGACATTGTATTGTGTTCACAGTTTGGCCCTCATAAAGTTCAGGAAGAAGTGCTTGGTAAAACAACTATTGACCCAGAGAAAAACCCACTTTTGTTTACTTGGCTGAAATCTCTGAATGAGTTGCCTTTAGTGAAAGAGTTAACCCCTCATGAAAAGCTAGTATCAGTTCTTCACTTTTTCAGAAACTATGCCCTCAAATCTAGTGCTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004364 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009404 GO:0009407 GO:0009636 GO:0009987 GO:0016740 GO:0016765 GO:0019748 GO:0034641 GO:0042221 GO:0043603 GO:0044237 GO:0044248 GO:0044424 GO:0044464 GO:0050896 GO:0051186 GO:0071704 GO:0098754 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418

Pfam Domains

Protein Families

GST_C GST_N GST_N_3

Protein Analysis

229

Amino Acids

25.91

Weight (kDa)

5.69

Isoelectric Point (pI)

31.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GST_N	PF02798	7 - 76	1.4e-12	Glutathione S-transferase, N-terminal domain
GST_N_3	PF13417	9 - 77	2e-12	Glutathione S-transferase, N-terminal domain
GST_N_2	PF13409	14 - 77	6.2e-10	Glutathione S-transferase, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000433)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62480 AT5G62480 AT5G62480
fragaria_vesca	FvH4_5g15010 FvH4_5g15020 FvH4_5g15100 FvH4_5g15110 FvH4_5g15120 FvH4_5g15121 FvH4_5g15121 FvH4_5g15121
malus_domestica	MD06G1192000.v1.1 MD06G1192100.v1.1
prunus_persica	Prupe.5G191500_v2.0.a1 Prupe.5G191600_v2.0.a1 Prupe.5G191800_v2.0.a1 Prupe.5G192500_v2.0.a1 Prupe.5G192600_v2.0.a1 Prupe.5G192800_v2.0.a1
pyrus_communis	pycom06g17020
rosa_chinensis	RchiOBHm_Chr7g0181061 RchiOBHm_Chr7g0181081 RchiOBHm_Chr7g0181091 RchiOBHm_Chr7g0181101 RchiOBHm_Chr7g0181111 RchiOBHm_Chr7g0181241 RchiOBHm_Chr7g0181251 RchiOBHm_Chr7g0181261
rosa_laevigata	RLG00000005202 RLG00000005203 RLG00000005204 RLG00000005213 RLG00000005214 RLG00000005215 RLG00000005216
rosa_multiflora	Rmu_co8113330.1_g000001 Rmu_co8221866.1_g000001 Rmu_sc0001147.1_g000011 Rmu_sc0001147.1_g000012 Rmu_sc0001147.1_g000013 Rmu_sc0001147.1_g000024 Rmu_sc0001147.1_g000025 Rmu_sc0007079.1_g000005 Rmu_sc0007079.1_g000009 Rmu_sc0007079.1_g000010 Rmu_sc0007079.1_g000011 Rmu_sc0007079.1_g000012 Rmu_sc0015707.1_g000001 Rmu_sc0041900.1_g000001
rosa_roxburghii	Rroxscaffold_3G00272160 Rroxscaffold_3G00272170 Rroxscaffold_3G00272180 Rroxscaffold_3G00272270 Rroxscaffold_3G00272280 Rroxscaffold_3G00272290 Rroxscaffold_3G00272300
rosa_rugosa	Rorug06G0438700 Rorug06G0438700 Rorug06G0438700 Rorug06G0439800 Rorug06G0439900 Rorug06G0440000
rosa_samantha	Rh7AG040100 Rh7AG040200 Rh7AG040300 Rh7AG040400 Rh7AG041500 Rh7AG041600 Rh7AG041700 Rh7BG039500 Rh7BG039600 Rh7BG039800 Rh7BG040800 Rh7CG041300 Rh7CG041400 Rh7CG041600 Rh7CG041700 Rh7CG041800 Rh7CG043000 Rh7CG043100 Rh7CG043200 Rh7DG039700 Rh7DG039900 Rh7DG040000 Rh7DG040100 Rh7DG040200 Rh7DG041300 Rh7DG041400 Rh7DG041500
rosa_wichuraiana	Rw7G003310 Rw7G003320 Rw7G003330 Rw7G003420 Rw7G003430 Rw7G003440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	25
AclWI	GGATC	3 cut(s)	109, 257, 270
AfaI	GTAC	2 cut(s)	168, 360
AflIII	ACRYGT	1 cut(s)	313
AgsI	TTSAA	2 cut(s)	215, 407
AjuI	GAANNNNNNNTTGG	2 cut(s)	513, 545
AluBI	AGCT	4 cut(s)	67, 250, 300, 634
AluI	AGCT	4 cut(s)	67, 250, 300, 634
Alw26I	GTCTC	1 cut(s)	317
AlwI	GGATC	3 cut(s)	109, 257, 270
AoxI	GGCC	2 cut(s)	369, 502
ApeKI	GCWGC	2 cut(s)	456, 683
Asp700I	GAANNNNTTC	1 cut(s)	87
AspLEI	GCGC	2 cut(s)	73, 442
AspS9I	GGNCC	2 cut(s)	242, 503
AsuHPI	GGTGA	1 cut(s)	31
AsuNHI	GCTAGC	1 cut(s)	296
AvaII	GGWCC	1 cut(s)	242
BamHI	GGATCC	1 cut(s)	262
BanII	GRGCYC	1 cut(s)	280
BarI	GAAGNNNNNNTAC	2 cut(s)	630, 662
BbvI	GCAGC	2 cut(s)	468, 670
BccI	CCATC	3 cut(s)	133, 344, 380
BcoDI	GTCTC	1 cut(s)	317
BfaI	CTAG	4 cut(s)	42, 297, 635, 678
BfmI	CTRYAG	2 cut(s)	254, 454
BfoI	RGCGCY	1 cut(s)	74
BisI	GCNGC	2 cut(s)	457, 684
BlsI	GCNGC	2 cut(s)	458, 685
Bme18I	GGWCC	1 cut(s)	242
BmgT120I	GGNCC	2 cut(s)	242, 503
BmiI	GGNNCC	2 cut(s)	162, 264
BmtI	GCTAGC	1 cut(s)	300
BpmI	CTGGAG	1 cut(s)	290
Bpu10I	CCTNAGC	1 cut(s)	246
BpuEI	CTTGAG	1 cut(s)	264
BsaXI	ACNNNNNCTCC	2 cut(s)	114, 144
Bse1I	ACTGG	1 cut(s)	244
BseNI	ACTGG	1 cut(s)	244
BseRI	GAGGAG	1 cut(s)	122
BseXI	GCAGC	2 cut(s)	468, 670
BshFI	GGCC	2 cut(s)	371, 504
BslFI	GGGAC	1 cut(s)	316
BsmAI	GTCTC	1 cut(s)	317
BsmFI	GGGAC	1 cut(s)	316
BsmI	GAATGC	1 cut(s)	87
BsnI	GGCC	2 cut(s)	371, 504
Bsp1286I	GDGCHC	1 cut(s)	280
Bsp143I	GATC	2 cut(s)	114, 262
BspANI	GGCC	2 cut(s)	371, 504
BspHI	TCATGA	1 cut(s)	625
BspLI	GGNNCC	2 cut(s)	162, 264
BspMAI	CTGCAG	2 cut(s)	258, 458
BspOI	GCTAGC	1 cut(s)	300
BspPI	GGATC	3 cut(s)	109, 257, 270
BsrI	ACTGG	1 cut(s)	244
BssMI	GATC	2 cut(s)	114, 262
Bst4CI	ACNGT	2 cut(s)	437, 498
Bst6I	CTCTTC	1 cut(s)	402
BstC8I	GCNNGC	2 cut(s)	69, 298
BstDEI	CTNAG	2 cut(s)	54, 246
BstH2I	RGCGCY	1 cut(s)	74
BstHHI	GCGC	2 cut(s)	73, 442
BstKTI	GATC	2 cut(s)	117, 265
BstMAI	GTCTC	1 cut(s)	317
BstMBI	GATC	2 cut(s)	114, 262
BstNSI	RCATGY	1 cut(s)	317
BstSFI	CTRYAG	2 cut(s)	254, 454
BstV1I	GCAGC	2 cut(s)	468, 670
BstX2I	RGATCY	1 cut(s)	262
BstYI	RGATCY	1 cut(s)	262
BsuRI	GGCC	2 cut(s)	371, 504
Cac8I	GCNNGC	2 cut(s)	69, 298
CciI	TCATGA	1 cut(s)	625
CfoI	GCGC	2 cut(s)	73, 442
Cfr13I	GGNCC	2 cut(s)	242, 503
Csp6I	GTAC	2 cut(s)	167, 359
CviAII	CATG	5 cut(s)	29, 112, 231, 314, 626
CviQI	GTAC	2 cut(s)	167, 359
DdeI	CTNAG	2 cut(s)	54, 246
DpnI	GATC	2 cut(s)	116, 264
DpnII	GATC	2 cut(s)	114, 262
Eam1104I	CTCTTC	1 cut(s)	402
EarI	CTCTTC	1 cut(s)	402
Eco24I	GRGCYC	1 cut(s)	280
Eco47I	GGWCC	1 cut(s)	242
EcoT38I	GRGCYC	1 cut(s)	280
FaeI	CATG	5 cut(s)	32, 115, 234, 317, 629
FaiI	YATR	8 cut(s)	30, 113, 232, 315, 329, 510, 627, 666
FalI	AAGNNNNNCTT	2 cut(s)	513, 545
FaqI	GGGAC	1 cut(s)	316
FatI	CATG	5 cut(s)	28, 111, 230, 313, 625
FblI	GTMKAC	1 cut(s)	25
Fnu4HI	GCNGC	2 cut(s)	457, 684
FriOI	GRGCYC	1 cut(s)	280
Fsp4HI	GCNGC	2 cut(s)	457, 684
FspBI	CTAG	4 cut(s)	42, 297, 635, 678
GlaI	GCGC	2 cut(s)	72, 441
GluI	GCNGC	2 cut(s)	457, 684
GsuI	CTGGAG	1 cut(s)	290
HaeII	RGCGCY	1 cut(s)	74
HaeIII	GGCC	2 cut(s)	371, 504
HhaI	GCGC	2 cut(s)	73, 442
Hin1II	CATG	5 cut(s)	32, 115, 234, 317, 629
Hin6I	GCGC	2 cut(s)	71, 440
HinP1I	GCGC	2 cut(s)	71, 440
HincII	GTYRAC	1 cut(s)	618
HindII	GTYRAC	1 cut(s)	618
HindIII	AAGCTT	1 cut(s)	248
HinfI	GANTC	3 cut(s)	22, 197, 414
HpaI	GTTAAC	1 cut(s)	618
HphI	GGTGA	1 cut(s)	31
Hpy166II	GTNNAC	6 cut(s)	26, 151, 175, 494, 573, 618
Hpy188I	TCNGA	2 cut(s)	591, 659
Hpy188III	TCNNGA	4 cut(s)	212, 476, 518, 626
Hpy8I	GTNNAC	6 cut(s)	26, 151, 175, 494, 573, 618
HpyAV	CCTTC	3 cut(s)	77, 361, 453
HpyCH4III	ACNGT	2 cut(s)	437, 498
HpyCH4V	TGCA	3 cut(s)	256, 342, 456
HpyF3I	CTNAG	2 cut(s)	54, 246
Hsp92II	CATG	5 cut(s)	32, 115, 234, 317, 629
HspAI	GCGC	2 cut(s)	71, 440
KspAI	GTTAAC	1 cut(s)	618
Kzo9I	GATC	2 cut(s)	114, 262
Lsp1109I	GCAGC	2 cut(s)	468, 670
MaeI	CTAG	4 cut(s)	42, 297, 635, 678
MalI	GATC	2 cut(s)	116, 264
MboI	GATC	2 cut(s)	114, 262
MboII	GAAGA	3 cut(s)	419, 533, 638
MflI	RGATCY	1 cut(s)	262
MhlI	GDGCHC	1 cut(s)	280
MluCI	AATT	4 cut(s)	142, 204, 380, 392
MlyI	GAGTC	1 cut(s)	31
MmeI	TCCRAC	1 cut(s)	87
MnlI	CCTC	6 cut(s)	143, 253, 403, 516, 633, 680
MroXI	GAANNNNTTC	1 cut(s)	87
MseI	TTAA	2 cut(s)	395, 617
Mva1269I	GAATGC	1 cut(s)	87
NdeII	GATC	2 cut(s)	114, 262
NheI	GCTAGC	1 cut(s)	296
NlaIII	CATG	5 cut(s)	32, 115, 234, 317, 629
NlaIV	GGNNCC	2 cut(s)	162, 264
NspI	RCATGY	1 cut(s)	317
PagI	TCATGA	1 cut(s)	625
PciI	ACATGT	1 cut(s)	313
PctI	GAATGC	1 cut(s)	87
PdmI	GAANNNNTTC	1 cut(s)	87
PfeI	GAWTC	2 cut(s)	197, 414
PflFI	GACNNNGTC	1 cut(s)	328
PkrI	GCNGC	2 cut(s)	458, 685
PleI	GAGTC	1 cut(s)	30
PpsI	GAGTC	1 cut(s)	30
PscI	ACATGT	1 cut(s)	313
PspN4I	GGNNCC	2 cut(s)	162, 264
PspPI	GGNCC	2 cut(s)	242, 503
PstI	CTGCAG	2 cut(s)	258, 458
PsuI	RGATCY	1 cut(s)	262
PsyI	GACNNNGTC	1 cut(s)	328
RsaI	GTAC	2 cut(s)	168, 360
RsaNI	GTAC	2 cut(s)	167, 359
SaqAI	TTAA	2 cut(s)	395, 617
SatI	GCNGC	2 cut(s)	457, 684
Sau3AI	GATC	2 cut(s)	114, 262
Sau96I	GGNCC	2 cut(s)	242, 503
SchI	GAGTC	1 cut(s)	31
SduI	GDGCHC	1 cut(s)	280
SetI	ASST	5 cut(s)	69, 162, 252, 302, 636
SfcI	CTRYAG	2 cut(s)	254, 454
SinI	GGWCC	1 cut(s)	242
SmlI	CTYRAG	1 cut(s)	279
SmoI	CTYRAG	1 cut(s)	279
Sse9I	AATT	4 cut(s)	142, 204, 380, 392
SspMI	CTAG	4 cut(s)	42, 297, 635, 678
TaaI	ACNGT	2 cut(s)	437, 498
TasI	AATT	4 cut(s)	142, 204, 380, 392
TatI	WGTACW	2 cut(s)	166, 358
TfiI	GAWTC	2 cut(s)	197, 414
Tru1I	TTAA	2 cut(s)	395, 617
Tru9I	TTAA	2 cut(s)	395, 617
TseI	GCWGC	2 cut(s)	456, 683
TspDTI	ATGAA	2 cut(s)	240, 642
Tth111I	GACNNNGTC	1 cut(s)	328
VpaK11BI	GGWCC	1 cut(s)	242
XceI	RCATGY	1 cut(s)	317
XmiI	GTMKAC	1 cut(s)	25
XmnI	GAANNNNTTC	1 cut(s)	87
XspI	CTAG	4 cut(s)	42, 297, 635, 678

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.