Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000433

Physical Location & Seq

Genomic Coordinates Reverse (-)

2843459 .. 2844578

Gene Structure 1120 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ16165

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGGTAGAGGAAAATGTGGTGAGTCTACATGGAATGTGGGCTAGTCCTTTCTCTAAGAGTGTAGAGCTGGCGCTGAAAACCGAAGGCATTCCCTTTGAGTTTGTTGACGAAGATTTGAGGAACAAGAGTCCATCACTCCTCAAATACAATCTTGTTCACAAAAAGGTTCCTGTATTTGTTCACAATGGAAAGCCTATTGCTGAATCACTAATTATTCTTGAATACATTGATGAAACATGGAAAACTGGTCCTAAGCTTCTGCAGGAGGATCCTTACAAAAGGGCTCAAGTTCGCTTCTGGGCTAGCTTTCTCCAGCAACATGTATTTGAGACTATGTCCCTGTTATGCAAAACTGATGGAGAAGTACAAGAGAAGGCCATCAAAGAATTGTTTGAGAAATTAAAGACATTTGAAGAGGGAATCAAGGACTTATTCCCAGACGGGGCTCCTTCTATTGACTGCAGCAACAATCTGGGGCTTCTGGACATTGTATTGTGTTCACAGTTTGGCCCTCATAAAGTTCAGGAAGAAGTGCTTGGTATAACAACTATTGACCCAGAGAAAAACCCACTTTTGTTTACTTGGCTGAAATCTCTGAATGAGTTGCCTTTAGTGAAAGAGTTAACCCCTCATGAAAAGCTAGTATCAGTTCTTCACTTTTTCAGAAACTATGCCCTCAAATCTAGTGCTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004364 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009404 GO:0009407 GO:0009636 GO:0009987 GO:0016740 GO:0016765 GO:0019748 GO:0034641 GO:0042221 GO:0043603 GO:0044237 GO:0044248 GO:0044424 GO:0044464 GO:0050896 GO:0051186 GO:0071704 GO:0098754 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418

Pfam Domains

Protein Families

GST_C GST_N GST_N_3

Protein Analysis

231

Amino Acids

26.32

Weight (kDa)

5.56

Isoelectric Point (pI)

35.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GST_N	PF02798	7 - 78	1.4e-17	Glutathione S-transferase, N-terminal domain
GST_N_3	PF13417	9 - 79	8.6e-15	Glutathione S-transferase, N-terminal domain
GST_N_2	PF13409	14 - 79	6.9e-11	Glutathione S-transferase, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000433)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62480 AT5G62480 AT5G62480
fragaria_vesca	FvH4_5g15010 FvH4_5g15020 FvH4_5g15100 FvH4_5g15110 FvH4_5g15120 FvH4_5g15121 FvH4_5g15121 FvH4_5g15121
malus_domestica	MD06G1192000.v1.1 MD06G1192100.v1.1
prunus_persica	Prupe.5G191500_v2.0.a1 Prupe.5G191600_v2.0.a1 Prupe.5G191800_v2.0.a1 Prupe.5G192500_v2.0.a1 Prupe.5G192600_v2.0.a1 Prupe.5G192800_v2.0.a1
pyrus_communis	pycom06g17020
rosa_chinensis	RchiOBHm_Chr7g0181061 RchiOBHm_Chr7g0181081 RchiOBHm_Chr7g0181091 RchiOBHm_Chr7g0181101 RchiOBHm_Chr7g0181111 RchiOBHm_Chr7g0181241 RchiOBHm_Chr7g0181251 RchiOBHm_Chr7g0181261
rosa_laevigata	RLG00000005202 RLG00000005203 RLG00000005204 RLG00000005213 RLG00000005214 RLG00000005215 RLG00000005216
rosa_multiflora	Rmu_co8113330.1_g000001 Rmu_co8221866.1_g000001 Rmu_sc0001147.1_g000011 Rmu_sc0001147.1_g000012 Rmu_sc0001147.1_g000013 Rmu_sc0001147.1_g000024 Rmu_sc0001147.1_g000025 Rmu_sc0007079.1_g000005 Rmu_sc0007079.1_g000009 Rmu_sc0007079.1_g000010 Rmu_sc0007079.1_g000011 Rmu_sc0007079.1_g000012 Rmu_sc0015707.1_g000001 Rmu_sc0041900.1_g000001
rosa_roxburghii	Rroxscaffold_3G00272160 Rroxscaffold_3G00272170 Rroxscaffold_3G00272180 Rroxscaffold_3G00272270 Rroxscaffold_3G00272280 Rroxscaffold_3G00272290 Rroxscaffold_3G00272300
rosa_rugosa	Rorug06G0438700 Rorug06G0438700 Rorug06G0438700 Rorug06G0439800 Rorug06G0439900 Rorug06G0440000
rosa_samantha	Rh7AG040100 Rh7AG040200 Rh7AG040300 Rh7AG040400 Rh7AG041500 Rh7AG041600 Rh7AG041700 Rh7BG039500 Rh7BG039600 Rh7BG039800 Rh7BG040800 Rh7CG041300 Rh7CG041400 Rh7CG041600 Rh7CG041700 Rh7CG041800 Rh7CG043000 Rh7CG043100 Rh7CG043200 Rh7DG039700 Rh7DG039900 Rh7DG040000 Rh7DG040100 Rh7DG040200 Rh7DG041300 Rh7DG041400 Rh7DG041500
rosa_wichuraiana	Rw7G003310 Rw7G003320 Rw7G003330 Rw7G003420 Rw7G003430 Rw7G003440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	25
AclWI	GGATC	2 cut(s)	263, 276
AfaI	GTAC	1 cut(s)	366
AfiI	CCNNNNNNNGG	1 cut(s)	442
AflIII	ACRYGT	1 cut(s)	319
AgsI	TTSAA	2 cut(s)	221, 413
AjuI	GAANNNNNNNTTGG	2 cut(s)	519, 551
AluBI	AGCT	4 cut(s)	67, 256, 306, 640
AluI	AGCT	4 cut(s)	67, 256, 306, 640
Alw26I	GTCTC	1 cut(s)	323
AlwI	GGATC	2 cut(s)	263, 276
AoxI	GGCC	2 cut(s)	375, 508
ApeKI	GCWGC	2 cut(s)	462, 689
Asp700I	GAANNNNTTC	1 cut(s)	87
AspLEI	GCGC	1 cut(s)	73
AspS9I	GGNCC	2 cut(s)	248, 509
AsuHPI	GGTGA	1 cut(s)	31
AsuNHI	GCTAGC	1 cut(s)	302
AvaII	GGWCC	1 cut(s)	248
BamHI	GGATCC	1 cut(s)	268
BanII	GRGCYC	2 cut(s)	286, 448
BarI	GAAGNNNNNNTAC	2 cut(s)	636, 668
BbvI	GCAGC	2 cut(s)	474, 676
BccI	CCATC	3 cut(s)	139, 350, 386
BcoDI	GTCTC	1 cut(s)	323
BfaI	CTAG	4 cut(s)	42, 303, 641, 684
BfmI	CTRYAG	2 cut(s)	260, 460
BfoI	RGCGCY	1 cut(s)	74
BisI	GCNGC	2 cut(s)	463, 690
BlsI	GCNGC	2 cut(s)	464, 691
Bme18I	GGWCC	1 cut(s)	248
BmgT120I	GGNCC	2 cut(s)	248, 509
BmiI	GGNNCC	3 cut(s)	168, 270, 447
BmtI	GCTAGC	1 cut(s)	306
BpmI	CTGGAG	1 cut(s)	296
Bpu10I	CCTNAGC	1 cut(s)	252
BpuEI	CTTGAG	1 cut(s)	270
Bsc4I	CCNNNNNNNGG	1 cut(s)	442
Bse1I	ACTGG	1 cut(s)	250
BseLI	CCNNNNNNNGG	1 cut(s)	442
BseNI	ACTGG	1 cut(s)	250
BseRI	GAGGAG	1 cut(s)	128
BseXI	GCAGC	2 cut(s)	474, 676
BshFI	GGCC	2 cut(s)	377, 510
BslFI	GGGAC	1 cut(s)	322
BslI	CCNNNNNNNGG	1 cut(s)	442
BsmAI	GTCTC	1 cut(s)	323
BsmFI	GGGAC	1 cut(s)	322
BsmI	GAATGC	1 cut(s)	87
BsnI	GGCC	2 cut(s)	377, 510
Bsp1286I	GDGCHC	2 cut(s)	286, 448
Bsp143I	GATC	1 cut(s)	268
BspANI	GGCC	2 cut(s)	377, 510
BspHI	TCATGA	1 cut(s)	631
BspLI	GGNNCC	3 cut(s)	168, 270, 447
BspMAI	CTGCAG	2 cut(s)	264, 464
BspOI	GCTAGC	1 cut(s)	306
BspPI	GGATC	2 cut(s)	263, 276
BsrI	ACTGG	1 cut(s)	250
BssMI	GATC	1 cut(s)	268
Bst4CI	ACNGT	1 cut(s)	504
Bst6I	CTCTTC	1 cut(s)	408
BstC8I	GCNNGC	2 cut(s)	69, 304
BstDEI	CTNAG	2 cut(s)	54, 252
BstH2I	RGCGCY	1 cut(s)	74
BstHHI	GCGC	1 cut(s)	73
BstKTI	GATC	1 cut(s)	271
BstMAI	GTCTC	1 cut(s)	323
BstMBI	GATC	1 cut(s)	268
BstNSI	RCATGY	1 cut(s)	323
BstSFI	CTRYAG	2 cut(s)	260, 460
BstV1I	GCAGC	2 cut(s)	474, 676
BstX2I	RGATCY	1 cut(s)	268
BstYI	RGATCY	1 cut(s)	268
BsuRI	GGCC	2 cut(s)	377, 510
Cac8I	GCNNGC	2 cut(s)	69, 304
CciI	TCATGA	1 cut(s)	631
CfoI	GCGC	1 cut(s)	73
Cfr13I	GGNCC	2 cut(s)	248, 509
Csp6I	GTAC	1 cut(s)	365
CviAII	CATG	4 cut(s)	29, 237, 320, 632
CviQI	GTAC	1 cut(s)	365
DdeI	CTNAG	2 cut(s)	54, 252
DpnI	GATC	1 cut(s)	270
DpnII	GATC	1 cut(s)	268
Eam1104I	CTCTTC	1 cut(s)	408
EarI	CTCTTC	1 cut(s)	408
Eco24I	GRGCYC	2 cut(s)	286, 448
Eco47I	GGWCC	1 cut(s)	248
EcoT38I	GRGCYC	2 cut(s)	286, 448
FaeI	CATG	4 cut(s)	32, 240, 323, 635
FaiI	YATR	9 cut(s)	30, 238, 321, 335, 346, 516, 542, 633, 672
FalI	AAGNNNNNCTT	2 cut(s)	519, 551
FaqI	GGGAC	1 cut(s)	322
FatI	CATG	4 cut(s)	28, 236, 319, 631
FblI	GTMKAC	1 cut(s)	25
Fnu4HI	GCNGC	2 cut(s)	463, 690
FriOI	GRGCYC	2 cut(s)	286, 448
Fsp4HI	GCNGC	2 cut(s)	463, 690
FspBI	CTAG	4 cut(s)	42, 303, 641, 684
GlaI	GCGC	1 cut(s)	72
GluI	GCNGC	2 cut(s)	463, 690
GsuI	CTGGAG	1 cut(s)	296
HaeII	RGCGCY	1 cut(s)	74
HaeIII	GGCC	2 cut(s)	377, 510
HhaI	GCGC	1 cut(s)	73
Hin1II	CATG	4 cut(s)	32, 240, 323, 635
Hin6I	GCGC	1 cut(s)	71
HinP1I	GCGC	1 cut(s)	71
HincII	GTYRAC	2 cut(s)	106, 624
HindII	GTYRAC	2 cut(s)	106, 624
HindIII	AAGCTT	1 cut(s)	254
HinfI	GANTC	4 cut(s)	22, 127, 203, 420
HpaI	GTTAAC	1 cut(s)	624
HphI	GGTGA	1 cut(s)	31
Hpy166II	GTNNAC	7 cut(s)	26, 106, 157, 181, 500, 579, 624
Hpy188I	TCNGA	2 cut(s)	597, 665
Hpy188III	TCNNGA	4 cut(s)	218, 482, 524, 632
Hpy8I	GTNNAC	7 cut(s)	26, 106, 157, 181, 500, 579, 624
HpyAV	CCTTC	3 cut(s)	77, 367, 459
HpyCH4III	ACNGT	1 cut(s)	504
HpyCH4V	TGCA	3 cut(s)	262, 348, 462
HpyF3I	CTNAG	2 cut(s)	54, 252
Hsp92II	CATG	4 cut(s)	32, 240, 323, 635
HspAI	GCGC	1 cut(s)	71
KspAI	GTTAAC	1 cut(s)	624
Kzo9I	GATC	1 cut(s)	268
LmnI	GCTCC	1 cut(s)	451
Lsp1109I	GCAGC	2 cut(s)	474, 676
MaeI	CTAG	4 cut(s)	42, 303, 641, 684
MalI	GATC	1 cut(s)	270
MboI	GATC	1 cut(s)	268
MboII	GAAGA	4 cut(s)	122, 425, 539, 644
MflI	RGATCY	1 cut(s)	268
MhlI	GDGCHC	2 cut(s)	286, 448
MluCI	AATT	3 cut(s)	210, 386, 398
MlyI	GAGTC	2 cut(s)	31, 136
MnlI	CCTC	7 cut(s)	111, 149, 259, 409, 522, 639, 686
MroXI	GAANNNNTTC	1 cut(s)	87
MseI	TTAA	2 cut(s)	401, 623
Mva1269I	GAATGC	1 cut(s)	87
NdeII	GATC	1 cut(s)	268
NheI	GCTAGC	1 cut(s)	302
NlaIII	CATG	4 cut(s)	32, 240, 323, 635
NlaIV	GGNNCC	3 cut(s)	168, 270, 447
NspI	RCATGY	1 cut(s)	323
PagI	TCATGA	1 cut(s)	631
PciI	ACATGT	1 cut(s)	319
PctI	GAATGC	1 cut(s)	87
PdmI	GAANNNNTTC	1 cut(s)	87
PfeI	GAWTC	2 cut(s)	203, 420
PflFI	GACNNNGTC	1 cut(s)	334
PkrI	GCNGC	2 cut(s)	464, 691
PleI	GAGTC	2 cut(s)	30, 135
PpsI	GAGTC	2 cut(s)	30, 135
PscI	ACATGT	1 cut(s)	319
PspN4I	GGNNCC	3 cut(s)	168, 270, 447
PspPI	GGNCC	2 cut(s)	248, 509
PstI	CTGCAG	2 cut(s)	264, 464
PsuI	RGATCY	1 cut(s)	268
PsyI	GACNNNGTC	1 cut(s)	334
RsaI	GTAC	1 cut(s)	366
RsaNI	GTAC	1 cut(s)	365
SaqAI	TTAA	2 cut(s)	401, 623
SatI	GCNGC	2 cut(s)	463, 690
Sau3AI	GATC	1 cut(s)	268
Sau96I	GGNCC	2 cut(s)	248, 509
SchI	GAGTC	2 cut(s)	31, 136
SduI	GDGCHC	2 cut(s)	286, 448
SetI	ASST	5 cut(s)	69, 168, 258, 308, 642
SfcI	CTRYAG	2 cut(s)	260, 460
SinI	GGWCC	1 cut(s)	248
SmlI	CTYRAG	1 cut(s)	285
SmoI	CTYRAG	1 cut(s)	285
Sse9I	AATT	3 cut(s)	210, 386, 398
SspMI	CTAG	4 cut(s)	42, 303, 641, 684
TaaI	ACNGT	1 cut(s)	504
TasI	AATT	3 cut(s)	210, 386, 398
TatI	WGTACW	1 cut(s)	364
TfiI	GAWTC	2 cut(s)	203, 420
Tru1I	TTAA	2 cut(s)	401, 623
Tru9I	TTAA	2 cut(s)	401, 623
TseI	GCWGC	2 cut(s)	462, 689
TspDTI	ATGAA	2 cut(s)	246, 648
Tth111I	GACNNNGTC	1 cut(s)	334
VpaK11BI	GGWCC	1 cut(s)	248
XceI	RCATGY	1 cut(s)	323
XmiI	GTMKAC	1 cut(s)	25
XmnI	GAANNNNTTC	1 cut(s)	87
XspI	CTAG	4 cut(s)	42, 303, 641, 684

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.