Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0000433

Physical Location & Seq

Genomic Coordinates Reverse (-)

32776486 .. 32777498

Gene Structure 1013 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1192100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 279 bp

ATGGCAGAGGAAAACAAAGTGACCTTATATGGAATGTGGGCAAGCCCTTTTGTTAAGAGGGTGGTTTTTGCTCTCATACTCAAAGGCATACCCTACGAATACGTTGAAGAAGATTTGAGGAACAAAAGCTCATTGCTTCTCAAACTGAATGCCGAGTCCCTAGTCATCCTTGAGTACATTGATGAAATCTGGAAAACTGGCCCTCAGCTTCTTTCACAAGATCCGTATAAAAGATCCCAAGCTCGCTTTTGGGCCGGCTTTATGCAGCATATTTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004364 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009404 GO:0009407 GO:0009636 GO:0009987 GO:0016740 GO:0016765 GO:0019748 GO:0034641 GO:0042221 GO:0043603 GO:0044237 GO:0044248 GO:0044424 GO:0044464 GO:0050896 GO:0051186 GO:0071704 GO:0098754 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418

Pfam Domains

Protein Families

GST_C GST_N GST_N_3

Protein Analysis

93

Amino Acids

10.81

Weight (kDa)

6.57

Isoelectric Point (pI)

57.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GST_N	PF02798	6 - 50	7.6e-06	Glutathione S-transferase, N-terminal domain
GST_N_3	PF13417	9 - 50	1.4e-06	Glutathione S-transferase, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000433)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62480 AT5G62480 AT5G62480
fragaria_vesca	FvH4_5g15010 FvH4_5g15020 FvH4_5g15100 FvH4_5g15110 FvH4_5g15120 FvH4_5g15121 FvH4_5g15121 FvH4_5g15121
malus_domestica	MD06G1192000.v1.1 MD06G1192100.v1.1
prunus_persica	Prupe.5G191500_v2.0.a1 Prupe.5G191600_v2.0.a1 Prupe.5G191800_v2.0.a1 Prupe.5G192500_v2.0.a1 Prupe.5G192600_v2.0.a1 Prupe.5G192800_v2.0.a1
pyrus_communis	pycom06g17020
rosa_chinensis	RchiOBHm_Chr7g0181061 RchiOBHm_Chr7g0181081 RchiOBHm_Chr7g0181091 RchiOBHm_Chr7g0181101 RchiOBHm_Chr7g0181111 RchiOBHm_Chr7g0181241 RchiOBHm_Chr7g0181251 RchiOBHm_Chr7g0181261
rosa_laevigata	RLG00000005202 RLG00000005203 RLG00000005204 RLG00000005213 RLG00000005214 RLG00000005215 RLG00000005216
rosa_multiflora	Rmu_co8113330.1_g000001 Rmu_co8221866.1_g000001 Rmu_sc0001147.1_g000011 Rmu_sc0001147.1_g000012 Rmu_sc0001147.1_g000013 Rmu_sc0001147.1_g000024 Rmu_sc0001147.1_g000025 Rmu_sc0007079.1_g000005 Rmu_sc0007079.1_g000009 Rmu_sc0007079.1_g000010 Rmu_sc0007079.1_g000011 Rmu_sc0007079.1_g000012 Rmu_sc0015707.1_g000001 Rmu_sc0041900.1_g000001
rosa_roxburghii	Rroxscaffold_3G00272160 Rroxscaffold_3G00272170 Rroxscaffold_3G00272180 Rroxscaffold_3G00272270 Rroxscaffold_3G00272280 Rroxscaffold_3G00272290 Rroxscaffold_3G00272300
rosa_rugosa	Rorug06G0438700 Rorug06G0438700 Rorug06G0438700 Rorug06G0439800 Rorug06G0439900 Rorug06G0440000
rosa_samantha	Rh7AG040100 Rh7AG040200 Rh7AG040300 Rh7AG040400 Rh7AG041500 Rh7AG041600 Rh7AG041700 Rh7BG039500 Rh7BG039600 Rh7BG039800 Rh7BG040800 Rh7CG041300 Rh7CG041400 Rh7CG041600 Rh7CG041700 Rh7CG041800 Rh7CG043000 Rh7CG043100 Rh7CG043200 Rh7DG039700 Rh7DG039900 Rh7DG040000 Rh7DG040100 Rh7DG040200 Rh7DG041300 Rh7DG041400 Rh7DG041500
rosa_wichuraiana	Rw7G003310 Rw7G003320 Rw7G003330 Rw7G003420 Rw7G003430 Rw7G003440

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	215, 228
AfaI	GTAC	1 cut(s)	176
AgsI	TTSAA	1 cut(s)	107
AluBI	AGCT	3 cut(s)	129, 208, 242
AluI	AGCT	3 cut(s)	129, 208, 242
AlwI	GGATC	2 cut(s)	215, 228
AoxI	GGCC	2 cut(s)	199, 252
ApeKI	GCWGC	1 cut(s)	265
AspS9I	GGNCC	2 cut(s)	200, 252
BbvCI	CCTCAGC	1 cut(s)	204
BfaI	CTAG	1 cut(s)	161
BisI	GCNGC	1 cut(s)	266
BlsI	GCNGC	1 cut(s)	267
BmgT120I	GGNCC	2 cut(s)	200, 252
Bpu10I	CCTNAGC	1 cut(s)	204
BpuEI	CTTGAG	1 cut(s)	191
Bse118I	RCCGGY	1 cut(s)	254
Bse1I	ACTGG	1 cut(s)	202
Bse3DI	GCAATG	1 cut(s)	131
BseGI	GGATG	1 cut(s)	165
BseMI	GCAATG	1 cut(s)	131
BseMII	CTCAG	1 cut(s)	218
BseNI	ACTGG	1 cut(s)	202
BshFI	GGCC	2 cut(s)	201, 254
BsiSI	CCGG	1 cut(s)	255
BslFI	GGGAC	1 cut(s)	142
BsmFI	GGGAC	1 cut(s)	142
BsmI	GAATGC	1 cut(s)	154
BsnI	GGCC	2 cut(s)	201, 254
Bsp143I	GATC	2 cut(s)	220, 233
BspANI	GGCC	2 cut(s)	201, 254
BspCNI	CTCAG	1 cut(s)	217
BspPI	GGATC	2 cut(s)	215, 228
BsrDI	GCAATG	1 cut(s)	131
BsrFI	RCCGGY	1 cut(s)	254
BsrI	ACTGG	1 cut(s)	202
BssAI	RCCGGY	1 cut(s)	254
BssMI	GATC	2 cut(s)	220, 233
BstC8I	GCNNGC	3 cut(s)	43, 244, 256
BstDEI	CTNAG	1 cut(s)	204
BstF5I	GGATG	1 cut(s)	165
BstKTI	GATC	2 cut(s)	223, 236
BstMBI	GATC	2 cut(s)	220, 233
BstX2I	RGATCY	2 cut(s)	220, 233
BstYI	RGATCY	2 cut(s)	220, 233
BsuRI	GGCC	2 cut(s)	201, 254
BtsCI	GGATG	1 cut(s)	165
Cac8I	GCNNGC	3 cut(s)	43, 244, 256
Cfr10I	RCCGGY	1 cut(s)	254
Cfr13I	GGNCC	2 cut(s)	200, 252
Csp6I	GTAC	1 cut(s)	175
CviJI	RGCY	7 cut(s)	45, 129, 201, 208, 242, 254, 258
CviKI_1	RGCY	7 cut(s)	45, 129, 201, 208, 242, 254, 258
CviQI	GTAC	1 cut(s)	175
DdeI	CTNAG	1 cut(s)	204
DpnI	GATC	2 cut(s)	222, 235
DpnII	GATC	2 cut(s)	220, 233
FaiI	YATR	7 cut(s)	28, 30, 77, 89, 228, 263, 270
FaqI	GGGAC	1 cut(s)	142
Fnu4HI	GCNGC	1 cut(s)	266
FokI	GGATG	1 cut(s)	152
Fsp4HI	GCNGC	1 cut(s)	266
FspBI	CTAG	1 cut(s)	161
GluI	GCNGC	1 cut(s)	266
HaeIII	GGCC	2 cut(s)	201, 254
HapII	CCGG	1 cut(s)	255
HinfI	GANTC	1 cut(s)	155
HpaII	CCGG	1 cut(s)	255
Hpy188III	TCNNGA	1 cut(s)	190
HpyCH4IV	ACGT	1 cut(s)	102
HpyCH4V	TGCA	1 cut(s)	265
HpyF3I	CTNAG	1 cut(s)	204
HpySE526I	ACGT	1 cut(s)	102
KroI	GCCGGC	1 cut(s)	254
KroNI	GCCGGC	1 cut(s)	256
Kzo9I	GATC	2 cut(s)	220, 233
LpnPI	CCDG	3 cut(s)	175, 183, 268
MaeI	CTAG	1 cut(s)	161
MaeII	ACGT	1 cut(s)	102
MaeIII	GTNAC	1 cut(s)	19
MalI	GATC	2 cut(s)	222, 235
MboI	GATC	2 cut(s)	220, 233
MboII	GAAGA	2 cut(s)	119, 122
MflI	RGATCY	2 cut(s)	220, 233
MlyI	GAGTC	1 cut(s)	164
MnlI	CCTC	3 cut(s)	51, 111, 213
MroNI	GCCGGC	1 cut(s)	254
MseI	TTAA	1 cut(s)	54
MspI	CCGG	1 cut(s)	255
Mva1269I	GAATGC	1 cut(s)	154
NaeI	GCCGGC	1 cut(s)	256
NdeII	GATC	2 cut(s)	220, 233
NgoMIV	GCCGGC	1 cut(s)	254
NmeAIII	GCCGAG	1 cut(s)	178
NmuCI	GTSAC	1 cut(s)	19
PctI	GAATGC	1 cut(s)	154
PdiI	GCCGGC	1 cut(s)	256
PkrI	GCNGC	1 cut(s)	267
PleI	GAGTC	1 cut(s)	163
PpsI	GAGTC	1 cut(s)	163
PspPI	GGNCC	2 cut(s)	200, 252
PsuI	RGATCY	2 cut(s)	220, 233
RsaI	GTAC	1 cut(s)	176
RsaNI	GTAC	1 cut(s)	175
SaqAI	TTAA	1 cut(s)	54
SatI	GCNGC	1 cut(s)	266
Sau3AI	GATC	2 cut(s)	220, 233
Sau96I	GGNCC	2 cut(s)	200, 252
SchI	GAGTC	1 cut(s)	164
SetI	ASST	5 cut(s)	26, 105, 131, 210, 244
SmlI	CTYRAG	1 cut(s)	170
SmoI	CTYRAG	1 cut(s)	170
SspMI	CTAG	1 cut(s)	161
TaiI	ACGT	1 cut(s)	105
TatI	WGTACW	1 cut(s)	174
Tru1I	TTAA	1 cut(s)	54
Tru9I	TTAA	1 cut(s)	54
TseFI	GTSAC	1 cut(s)	19
TseI	GCWGC	1 cut(s)	265
Tsp45I	GTSAC	1 cut(s)	19
TspDTI	ATGAA	1 cut(s)	198
TspGWI	ACGGA	1 cut(s)	213
XspI	CTAG	1 cut(s)	161

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.