Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0000433

Physical Location & Seq

Genomic Coordinates Reverse (-)

2530870 .. 2531238

Gene Structure 369 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG039600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGTTATTAGTGGTCAAAACCATTGGAGAAGCACAAGAGAAAGCCATCAAAGAAGTGTCTGAGAAGGTAAAATTACTTGAAACCGGACTCAAGGGTTTGTTCCCGGATGGCATTCCTTCAGTAGATGAGTACAGCAAAAATGTGACACTGCTAGATTTGGTCATTTTCGCACACTTTGGGGGATATGAAGCTCAGGAAGAAGTCCTTGGCCTAAAGTTTGTCGACTCCGAGAAGACTCCGCTGGTAGTTTCCTGCATAACAGCTCTGATTGAGATCCCTGCGTTGAAAGAGTCGCGGATTCCTCATGAAAAGATGGTGGCCTTCCTCAAGTTCCTTAGGGAAAATGCCCTCAAGTCTGCTACAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004364 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009404 GO:0009407 GO:0009636 GO:0009987 GO:0016740 GO:0016765 GO:0019748 GO:0034641 GO:0042221 GO:0043603 GO:0044237 GO:0044248 GO:0044424 GO:0044464 GO:0050896 GO:0051186 GO:0071704 GO:0098754 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418

Pfam Domains

Protein Families

GST_C GST_N GST_N_3

Protein Analysis

122

Amino Acids

13.43

Weight (kDa)

5.44

Isoelectric Point (pI)

25.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000433)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62480 AT5G62480 AT5G62480
fragaria_vesca	FvH4_5g15010 FvH4_5g15020 FvH4_5g15100 FvH4_5g15110 FvH4_5g15120 FvH4_5g15121 FvH4_5g15121 FvH4_5g15121
malus_domestica	MD06G1192000.v1.1 MD06G1192100.v1.1
prunus_persica	Prupe.5G191500_v2.0.a1 Prupe.5G191600_v2.0.a1 Prupe.5G191800_v2.0.a1 Prupe.5G192500_v2.0.a1 Prupe.5G192600_v2.0.a1 Prupe.5G192800_v2.0.a1
pyrus_communis	pycom06g17020
rosa_chinensis	RchiOBHm_Chr7g0181061 RchiOBHm_Chr7g0181081 RchiOBHm_Chr7g0181091 RchiOBHm_Chr7g0181101 RchiOBHm_Chr7g0181111 RchiOBHm_Chr7g0181241 RchiOBHm_Chr7g0181251 RchiOBHm_Chr7g0181261
rosa_laevigata	RLG00000005202 RLG00000005203 RLG00000005204 RLG00000005213 RLG00000005214 RLG00000005215 RLG00000005216
rosa_multiflora	Rmu_co8113330.1_g000001 Rmu_co8221866.1_g000001 Rmu_sc0001147.1_g000011 Rmu_sc0001147.1_g000012 Rmu_sc0001147.1_g000013 Rmu_sc0001147.1_g000024 Rmu_sc0001147.1_g000025 Rmu_sc0007079.1_g000005 Rmu_sc0007079.1_g000009 Rmu_sc0007079.1_g000010 Rmu_sc0007079.1_g000011 Rmu_sc0007079.1_g000012 Rmu_sc0015707.1_g000001 Rmu_sc0041900.1_g000001
rosa_roxburghii	Rroxscaffold_3G00272160 Rroxscaffold_3G00272170 Rroxscaffold_3G00272180 Rroxscaffold_3G00272270 Rroxscaffold_3G00272280 Rroxscaffold_3G00272290 Rroxscaffold_3G00272300
rosa_rugosa	Rorug06G0438700 Rorug06G0438700 Rorug06G0438700 Rorug06G0439800 Rorug06G0439900 Rorug06G0440000
rosa_samantha	Rh7AG040100 Rh7AG040200 Rh7AG040300 Rh7AG040400 Rh7AG041500 Rh7AG041600 Rh7AG041700 Rh7BG039500 Rh7BG039600 Rh7BG039800 Rh7BG040800 Rh7CG041300 Rh7CG041400 Rh7CG041600 Rh7CG041700 Rh7CG041800 Rh7CG043000 Rh7CG043100 Rh7CG043200 Rh7DG039700 Rh7DG039900 Rh7DG040000 Rh7DG040100 Rh7DG040200 Rh7DG041300 Rh7DG041400 Rh7DG041500
rosa_wichuraiana	Rw7G003310 Rw7G003320 Rw7G003330 Rw7G003420 Rw7G003430 Rw7G003440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	222
AccII	CGCG	1 cut(s)	295
AciI	CCGC	2 cut(s)	239, 295
AclWI	GGATC	1 cut(s)	268
AcuI	CTGAAG	1 cut(s)	102
AfaI	GTAC	1 cut(s)	131
AgsI	TTSAA	2 cut(s)	80, 286
AjuI	GAANNNNNNNTTGG	2 cut(s)	189, 221
AluBI	AGCT	3 cut(s)	191, 263, 365
AluI	AGCT	3 cut(s)	191, 263, 365
AlwI	GGATC	1 cut(s)	268
AoxI	GGCC	2 cut(s)	208, 318
AsuC2I	CCSGG	1 cut(s)	104
AxyI	CCTNAGG	1 cut(s)	335
BbsI	GAAGAC	1 cut(s)	239
BccI	CCATC	3 cut(s)	53, 101, 307
BcnI	CCSGG	1 cut(s)	104
BfaI	CTAG	1 cut(s)	152
BfmI	CTRYAG	1 cut(s)	360
Bme1390I	CCNGG	1 cut(s)	104
BmrFI	CCNGG	1 cut(s)	104
BpiI	GAAGAC	1 cut(s)	239
Bpu10I	CCTNAGC	1 cut(s)	192
BpuEI	CTTGAG	3 cut(s)	74, 311, 335
BpuMI	CCSGG	1 cut(s)	104
BsaBI	GATNNNNATC	1 cut(s)	272
BsaJI	CCNNGG	1 cut(s)	205
BsaWI	WCCGGW	1 cut(s)	83
Bse21I	CCTNAGG	1 cut(s)	335
Bse8I	GATNNNNATC	1 cut(s)	272
BseDI	CCNNGG	1 cut(s)	205
BseGI	GGATG	1 cut(s)	112
BseJI	GATNNNNATC	1 cut(s)	272
BseMII	CTCAG	2 cut(s)	51, 206
Bsh1236I	CGCG	1 cut(s)	295
BshFI	GGCC	2 cut(s)	210, 320
BsiSI	CCGG	2 cut(s)	84, 104
BsmI	GAATGC	1 cut(s)	111
BsnI	GGCC	2 cut(s)	210, 320
Bsp143I	GATC	1 cut(s)	273
BspACI	CCGC	2 cut(s)	239, 295
BspANI	GGCC	2 cut(s)	210, 320
BspCNI	CTCAG	2 cut(s)	52, 205
BspFNI	CGCG	1 cut(s)	295
BspHI	TCATGA	1 cut(s)	304
BspPI	GGATC	1 cut(s)	268
BssECI	CCNNGG	1 cut(s)	205
BssMI	GATC	1 cut(s)	273
BssT1I	CCWWGG	1 cut(s)	205
BstDEI	CTNAG	3 cut(s)	60, 192, 335
BstF5I	GGATG	1 cut(s)	112
BstFNI	CGCG	1 cut(s)	295
BstKTI	GATC	1 cut(s)	276
BstMBI	GATC	1 cut(s)	273
BstSCI	CCNGG	1 cut(s)	102
BstSFI	CTRYAG	1 cut(s)	360
BstUI	CGCG	1 cut(s)	295
BstV2I	GAAGAC	1 cut(s)	239
BstX2I	RGATCY	1 cut(s)	273
BstYI	RGATCY	1 cut(s)	273
Bsu36I	CCTNAGG	1 cut(s)	335
BsuRI	GGCC	2 cut(s)	210, 320
BtsCI	GGATG	1 cut(s)	112
BtsI	GCAGTG	1 cut(s)	146
BtsIMutI	CAGTG	1 cut(s)	146
CciI	TCATGA	1 cut(s)	304
Csp6I	GTAC	1 cut(s)	130
CviAII	CATG	1 cut(s)	305
CviJI	RGCY	6 cut(s)	44, 191, 210, 263, 320, 365
CviKI_1	RGCY	6 cut(s)	44, 191, 210, 263, 320, 365
CviQI	GTAC	1 cut(s)	130
DdeI	CTNAG	3 cut(s)	60, 192, 335
DpnI	GATC	1 cut(s)	275
DpnII	GATC	1 cut(s)	273
Eco130I	CCWWGG	1 cut(s)	205
Eco57I	CTGAAG	1 cut(s)	102
Eco81I	CCTNAGG	1 cut(s)	335
EcoT14I	CCWWGG	1 cut(s)	205
ErhI	CCWWGG	1 cut(s)	205
FaeI	CATG	1 cut(s)	308
FaiI	YATR	3 cut(s)	186, 257, 306
FalI	AAGNNNNNCTT	2 cut(s)	189, 221
FatI	CATG	1 cut(s)	304
FblI	GTMKAC	1 cut(s)	222
FokI	GGATG	1 cut(s)	119
FspBI	CTAG	1 cut(s)	152
HaeIII	GGCC	2 cut(s)	210, 320
HapII	CCGG	2 cut(s)	84, 104
Hin1II	CATG	1 cut(s)	308
HincII	GTYRAC	1 cut(s)	223
HindII	GTYRAC	1 cut(s)	223
HinfI	GANTC	5 cut(s)	87, 224, 235, 290, 298
HpaII	CCGG	2 cut(s)	84, 104
Hpy166II	GTNNAC	1 cut(s)	223
Hpy188I	TCNGA	3 cut(s)	61, 229, 267
Hpy188III	TCNNGA	2 cut(s)	194, 305
Hpy8I	GTNNAC	1 cut(s)	223
HpyAV	CCTTC	3 cut(s)	58, 126, 331
HpyCH4V	TGCA	1 cut(s)	255
HpyF3I	CTNAG	3 cut(s)	60, 192, 335
Hsp92II	CATG	1 cut(s)	308
Kzo9I	GATC	1 cut(s)	273
LpnPI	CCDG	6 cut(s)	97, 117, 179, 227, 265, 291
MaeI	CTAG	1 cut(s)	152
MaeIII	GTNAC	1 cut(s)	142
MalI	GATC	1 cut(s)	275
MboI	GATC	1 cut(s)	273
MboII	GAAGA	2 cut(s)	209, 244
MflI	RGATCY	1 cut(s)	273
MluCI	AATT	1 cut(s)	71
MlyI	GAGTC	4 cut(s)	81, 218, 229, 299
MnlI	CCTC	3 cut(s)	312, 335, 359
MspA1I	CMGCKG	1 cut(s)	241
MspI	CCGG	2 cut(s)	84, 104
MspR9I	CCNGG	1 cut(s)	104
Mva1269I	GAATGC	1 cut(s)	111
MvnI	CGCG	1 cut(s)	295
NciI	CCSGG	1 cut(s)	104
NdeII	GATC	1 cut(s)	273
NlaIII	CATG	1 cut(s)	308
NmuCI	GTSAC	1 cut(s)	142
PagI	TCATGA	1 cut(s)	304
PctI	GAATGC	1 cut(s)	111
PfeI	GAWTC	1 cut(s)	298
PfoI	TCCNGGA	1 cut(s)	102
PleI	GAGTC	4 cut(s)	81, 218, 229, 298
PpsI	GAGTC	4 cut(s)	81, 218, 229, 298
PsuI	RGATCY	1 cut(s)	273
RsaI	GTAC	1 cut(s)	131
RsaNI	GTAC	1 cut(s)	130
SalI	GTCGAC	1 cut(s)	221
Sau3AI	GATC	1 cut(s)	273
SchI	GAGTC	4 cut(s)	81, 218, 229, 299
ScrFI	CCNGG	1 cut(s)	104
SetI	ASST	4 cut(s)	69, 193, 265, 367
SfcI	CTRYAG	1 cut(s)	360
SmlI	CTYRAG	3 cut(s)	89, 326, 350
SmoI	CTYRAG	3 cut(s)	89, 326, 350
Sse9I	AATT	1 cut(s)	71
SsiI	CCGC	2 cut(s)	239, 295
SspMI	CTAG	1 cut(s)	152
StyD4I	CCNGG	1 cut(s)	102
StyI	CCWWGG	1 cut(s)	205
TaqI	TCGA	1 cut(s)	222
TasI	AATT	1 cut(s)	71
TatI	WGTACW	1 cut(s)	129
TfiI	GAWTC	1 cut(s)	298
TscAI	CASTG	1 cut(s)	153
TseFI	GTSAC	1 cut(s)	142
Tsp45I	GTSAC	1 cut(s)	142
TspDTI	ATGAA	2 cut(s)	201, 321
TspRI	CASTG	1 cut(s)	153
XmiI	GTMKAC	1 cut(s)	222
XspI	CTAG	1 cut(s)	152

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.