Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000433

Physical Location & Seq

Genomic Coordinates Reverse (-)

2778457 .. 2779535

Gene Structure 1079 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ16154

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGGCAGAGGAAACCAGAGTGATCCTCCATGGAAGCAGACTTAGCCCTTATGTTAAGAGGGTGGAAATGGCCCTCAAAATCAAAGGCATACCCTATGAGTTTGTGCAAGAAGATTTGAAGAACATGAGTCCATTGCTCCTCAAGTACAACCCTGTTCACAAAAAGATTCCTGTACTTGTCCACAATGGAAAACCTCTTGCTGAGTCTCTTGTCATCCTTGAGTATATTGATGAAACCTGGAAAACTAGCCCTCAACTTCTACCAGAAGATCCATATAGAAGAGCCCGAGTTCGCTTTTGGGCTAGCTTTCTGCACCAACAGTTATTTGAGGCCCTGGTCTTAGTGATCAGAACCAACGGAGAAGCACAACAGAAAGCCATCAAACAACTGTATAACCAATTGAAGTTATTCGAAGACGGAATGAAGGATTTATTCCCAGATGGGATTCCTTTGTCGGTTGACAACAAGATCAATGTAGGTCTACTAGATGTGCTCATGTTTTCTGTCTTTGATTCATATGAGGCTCATGAACAAGTCCTCGGCATAAAGGTGATAGACCCTGAGAAGACACCAGTAATATTTTCCTGGATTAAAGCTATAAATGAGCTACCTGTGGTGAAAGAGCTGCATATTCCTCATGAAAAAGTGGTGGCATCTGTCAAGCTTTTTAGAAAATTGGCCATGAATTCTTCTTCAGATACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004364 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009404 GO:0009407 GO:0009636 GO:0009987 GO:0016740 GO:0016765 GO:0019748 GO:0034641 GO:0042221 GO:0043603 GO:0044237 GO:0044248 GO:0044424 GO:0044464 GO:0050896 GO:0051186 GO:0071704 GO:0098754 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418

Pfam Domains

Protein Families

GST_C GST_N GST_N_3

Protein Analysis

234

Amino Acids

26.88

Weight (kDa)

7.88

Isoelectric Point (pI)

32.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GST_N	PF02798	7 - 78	3.7e-18	Glutathione S-transferase, N-terminal domain
GST_N_3	PF13417	9 - 79	1.7e-17	Glutathione S-transferase, N-terminal domain
GST_N_2	PF13409	15 - 79	2.2e-16	Glutathione S-transferase, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000433)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62480 AT5G62480 AT5G62480
fragaria_vesca	FvH4_5g15010 FvH4_5g15020 FvH4_5g15100 FvH4_5g15110 FvH4_5g15120 FvH4_5g15121 FvH4_5g15121 FvH4_5g15121
malus_domestica	MD06G1192000.v1.1 MD06G1192100.v1.1
prunus_persica	Prupe.5G191500_v2.0.a1 Prupe.5G191600_v2.0.a1 Prupe.5G191800_v2.0.a1 Prupe.5G192500_v2.0.a1 Prupe.5G192600_v2.0.a1 Prupe.5G192800_v2.0.a1
pyrus_communis	pycom06g17020
rosa_chinensis	RchiOBHm_Chr7g0181061 RchiOBHm_Chr7g0181081 RchiOBHm_Chr7g0181091 RchiOBHm_Chr7g0181101 RchiOBHm_Chr7g0181111 RchiOBHm_Chr7g0181241 RchiOBHm_Chr7g0181251 RchiOBHm_Chr7g0181261
rosa_laevigata	RLG00000005202 RLG00000005203 RLG00000005204 RLG00000005213 RLG00000005214 RLG00000005215 RLG00000005216
rosa_multiflora	Rmu_co8113330.1_g000001 Rmu_co8221866.1_g000001 Rmu_sc0001147.1_g000011 Rmu_sc0001147.1_g000012 Rmu_sc0001147.1_g000013 Rmu_sc0001147.1_g000024 Rmu_sc0001147.1_g000025 Rmu_sc0007079.1_g000005 Rmu_sc0007079.1_g000009 Rmu_sc0007079.1_g000010 Rmu_sc0007079.1_g000011 Rmu_sc0007079.1_g000012 Rmu_sc0015707.1_g000001 Rmu_sc0041900.1_g000001
rosa_roxburghii	Rroxscaffold_3G00272160 Rroxscaffold_3G00272170 Rroxscaffold_3G00272180 Rroxscaffold_3G00272270 Rroxscaffold_3G00272280 Rroxscaffold_3G00272290 Rroxscaffold_3G00272300
rosa_rugosa	Rorug06G0438700 Rorug06G0438700 Rorug06G0438700 Rorug06G0439800 Rorug06G0439900 Rorug06G0440000
rosa_samantha	Rh7AG040100 Rh7AG040200 Rh7AG040300 Rh7AG040400 Rh7AG041500 Rh7AG041600 Rh7AG041700 Rh7BG039500 Rh7BG039600 Rh7BG039800 Rh7BG040800 Rh7CG041300 Rh7CG041400 Rh7CG041600 Rh7CG041700 Rh7CG041800 Rh7CG043000 Rh7CG043100 Rh7CG043200 Rh7DG039700 Rh7DG039900 Rh7DG040000 Rh7DG040100 Rh7DG040200 Rh7DG041300 Rh7DG041400 Rh7DG041500
rosa_wichuraiana	Rw7G003310 Rw7G003320 Rw7G003330 Rw7G003420 Rw7G003430 Rw7G003440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	481
AclWI	GGATC	2 cut(s)	16, 263
AcoI	YGGCCR	1 cut(s)	678
AcsI	RAATTY	1 cut(s)	685
AcuI	CTGAAG	1 cut(s)	678
AfaI	GTAC	2 cut(s)	146, 174
AgsI	TTSAA	2 cut(s)	118, 403
AjnI	CCWGG	3 cut(s)	236, 333, 584
AluBI	AGCT	5 cut(s)	306, 596, 607, 625, 664
AluI	AGCT	5 cut(s)	306, 596, 607, 625, 664
Alw21I	GWGCWC	1 cut(s)	495
Alw26I	GTCTC	1 cut(s)	210
AlwI	GGATC	2 cut(s)	16, 263
Ama87I	CYCGRG	1 cut(s)	285
AoxI	GGCC	3 cut(s)	69, 330, 678
ApeKI	GCWGC	1 cut(s)	625
ApoI	RAATTY	1 cut(s)	685
Asp700I	GAANNNNTTC	1 cut(s)	407
AspS9I	GGNCC	2 cut(s)	70, 331
AsuHPI	GGTGA	2 cut(s)	562, 628
AsuII	TTCGAA	1 cut(s)	411
AsuNHI	GCTAGC	1 cut(s)	302
AvaI	CYCGRG	1 cut(s)	285
BalI	TGGCCA	1 cut(s)	680
BanII	GRGCYC	1 cut(s)	286
BbsI	GAAGAC	2 cut(s)	420, 572
Bbv12I	GWGCWC	1 cut(s)	495
BbvI	GCAGC	1 cut(s)	612
BccI	CCATC	2 cut(s)	386, 434
BciT130I	CCWGG	3 cut(s)	238, 335, 586
BclI	TGATCA	1 cut(s)	345
BcoDI	GTCTC	1 cut(s)	210
BfaI	CTAG	3 cut(s)	246, 303, 485
BisI	GCNGC	1 cut(s)	626
BlsI	GCNGC	1 cut(s)	627
Bme1390I	CCNGG	3 cut(s)	238, 335, 586
BmeT110I	CYCGRG	1 cut(s)	285
BmgT120I	GGNCC	2 cut(s)	70, 331
BmrFI	CCNGG	3 cut(s)	238, 335, 586
BmsI	GCATC	1 cut(s)	662
BmtI	GCTAGC	1 cut(s)	306
BpiI	GAAGAC	2 cut(s)	420, 572
BplI	GAGNNNNNCTC	2 cut(s)	9, 41
Bpu14I	TTCGAA	1 cut(s)	411
BpuEI	CTTGAG	2 cut(s)	125, 239
BsaJI	CCNNGG	3 cut(s)	28, 333, 538
Bse1I	ACTGG	1 cut(s)	572
Bse3DI	GCAATG	1 cut(s)	131
BseBI	CCWGG	3 cut(s)	238, 335, 586
BseDI	CCNNGG	3 cut(s)	28, 333, 538
BseGI	GGATG	1 cut(s)	213
BseMI	GCAATG	1 cut(s)	131
BseMII	CTCAG	2 cut(s)	192, 552
BseNI	ACTGG	1 cut(s)	572
BseRI	GAGGAG	1 cut(s)	128
BseXI	GCAGC	1 cut(s)	612
BsgI	GTGCAG	1 cut(s)	296
BshFI	GGCC	3 cut(s)	71, 332, 680
BsiHKAI	GWGCWC	1 cut(s)	495
BsiHKCI	CYCGRG	1 cut(s)	285
BsmAI	GTCTC	1 cut(s)	210
BsnI	GGCC	3 cut(s)	71, 332, 680
BsoBI	CYCGRG	1 cut(s)	285
Bsp119I	TTCGAA	1 cut(s)	411
Bsp1286I	GDGCHC	2 cut(s)	286, 495
Bsp143I	GATC	4 cut(s)	21, 268, 345, 468
Bsp19I	CCATGG	1 cut(s)	28
BspANI	GGCC	3 cut(s)	71, 332, 680
BspCNI	CTCAG	2 cut(s)	193, 553
BspHI	TCATGA	2 cut(s)	526, 637
BspOI	GCTAGC	1 cut(s)	306
BspPI	GGATC	2 cut(s)	16, 263
BspQI	GCTCTTC	1 cut(s)	274
BspT104I	TTCGAA	1 cut(s)	411
BsrDI	GCAATG	1 cut(s)	131
BsrI	ACTGG	1 cut(s)	572
BssECI	CCNNGG	3 cut(s)	28, 333, 538
BssMI	GATC	4 cut(s)	21, 268, 345, 468
BssT1I	CCWWGG	1 cut(s)	28
Bst2UI	CCWGG	3 cut(s)	238, 335, 586
Bst4CI	ACNGT	2 cut(s)	321, 390
Bst6I	CTCTTC	1 cut(s)	274
BstBI	TTCGAA	1 cut(s)	411
BstC8I	GCNNGC	1 cut(s)	304
BstDEI	CTNAG	4 cut(s)	41, 201, 340, 561
BstDSI	CCRYGG	1 cut(s)	28
BstF5I	GGATG	1 cut(s)	213
BstKTI	GATC	4 cut(s)	24, 271, 348, 471
BstMAI	GTCTC	1 cut(s)	210
BstMBI	GATC	4 cut(s)	21, 268, 345, 468
BstMWI	GCNNNNNNNGC	1 cut(s)	42
BstNI	CCWGG	3 cut(s)	238, 335, 586
BstSCI	CCNGG	3 cut(s)	236, 333, 584
BstV1I	GCAGC	1 cut(s)	612
BstV2I	GAAGAC	2 cut(s)	420, 572
BstX2I	RGATCY	1 cut(s)	268
BstYI	RGATCY	1 cut(s)	268
BsuRI	GGCC	3 cut(s)	71, 332, 680
BtgI	CCRYGG	1 cut(s)	28
BtsCI	GGATG	1 cut(s)	213
Cac8I	GCNNGC	1 cut(s)	304
CciI	TCATGA	2 cut(s)	526, 637
Cfr13I	GGNCC	2 cut(s)	70, 331
Csp6I	GTAC	2 cut(s)	145, 173
CviAII	CATG	6 cut(s)	29, 124, 496, 527, 638, 682
CviQI	GTAC	2 cut(s)	145, 173
DdeI	CTNAG	4 cut(s)	41, 201, 340, 561
DpnI	GATC	4 cut(s)	23, 270, 347, 470
DpnII	GATC	4 cut(s)	21, 268, 345, 468
EaeI	YGGCCR	1 cut(s)	678
Eam1104I	CTCTTC	1 cut(s)	274
EarI	CTCTTC	1 cut(s)	274
Eco130I	CCWWGG	1 cut(s)	28
Eco24I	GRGCYC	1 cut(s)	286
Eco57I	CTGAAG	1 cut(s)	678
Eco88I	CYCGRG	1 cut(s)	285
EcoO109I	RGGNCCY	1 cut(s)	331
EcoRI	GAATTC	1 cut(s)	685
EcoRII	CCWGG	3 cut(s)	236, 333, 584
EcoT14I	CCWWGG	1 cut(s)	28
EcoT38I	GRGCYC	1 cut(s)	286
ErhI	CCWWGG	1 cut(s)	28
FaeI	CATG	6 cut(s)	32, 127, 499, 530, 641, 685
FatI	CATG	6 cut(s)	28, 123, 495, 526, 637, 681
FauNDI	CATATG	1 cut(s)	517
FbaI	TGATCA	1 cut(s)	345
FblI	GTMKAC	1 cut(s)	481
Fnu4HI	GCNGC	1 cut(s)	626
FokI	GGATG	1 cut(s)	200
FriOI	GRGCYC	1 cut(s)	286
Fsp4HI	GCNGC	1 cut(s)	626
FspBI	CTAG	3 cut(s)	246, 303, 485
GluI	GCNGC	1 cut(s)	626
HaeIII	GGCC	3 cut(s)	71, 332, 680
Hin1II	CATG	6 cut(s)	32, 127, 499, 530, 641, 685
HincII	GTYRAC	1 cut(s)	460
HindII	GTYRAC	1 cut(s)	460
HindIII	AAGCTT	1 cut(s)	662
HinfI	GANTC	5 cut(s)	127, 166, 203, 445, 512
HphI	GGTGA	2 cut(s)	562, 628
Hpy166II	GTNNAC	4 cut(s)	157, 181, 460, 482
Hpy188I	TCNGA	2 cut(s)	350, 697
Hpy188III	TCNNGA	2 cut(s)	527, 638
Hpy8I	GTNNAC	4 cut(s)	157, 181, 460, 482
HpyAV	CCTTC	1 cut(s)	418
HpyCH4III	ACNGT	2 cut(s)	321, 390
HpyCH4V	TGCA	3 cut(s)	106, 313, 628
HpyF10VI	GCNNNNNNNGC	1 cut(s)	42
HpyF3I	CTNAG	4 cut(s)	41, 201, 340, 561
Hsp92II	CATG	6 cut(s)	32, 127, 499, 530, 641, 685
Ksp22I	TGATCA	1 cut(s)	345
Kzo9I	GATC	4 cut(s)	21, 268, 345, 468
LguI	GCTCTTC	1 cut(s)	274
LmnI	GCTCC	1 cut(s)	141
Lsp1109I	GCAGC	1 cut(s)	612
LweI	GCATC	1 cut(s)	662
MaeI	CTAG	3 cut(s)	246, 303, 485
MalI	GATC	4 cut(s)	23, 270, 347, 470
MboI	GATC	4 cut(s)	21, 268, 345, 468
MboII	GAAGA	8 cut(s)	122, 130, 278, 291, 425, 577, 681, 684
MfeI	CAATTG	1 cut(s)	398
MflI	RGATCY	1 cut(s)	268
MhlI	GDGCHC	2 cut(s)	286, 495
MlsI	TGGCCA	1 cut(s)	680
MluCI	AATT	3 cut(s)	398, 674, 685
MluNI	TGGCCA	1 cut(s)	680
MlyI	GAGTC	2 cut(s)	136, 212
Mox20I	TGGCCA	1 cut(s)	680
MroXI	GAANNNNTTC	1 cut(s)	407
MscI	TGGCCA	1 cut(s)	680
MseI	TTAA	2 cut(s)	54, 591
MslI	CAYNNNNRTG	1 cut(s)	548
Msp20I	TGGCCA	1 cut(s)	680
MspR9I	CCNGG	3 cut(s)	238, 335, 586
MunI	CAATTG	1 cut(s)	398
MvaI	CCWGG	3 cut(s)	238, 335, 586
MwoI	GCNNNNNNNGC	1 cut(s)	42
NcoI	CCATGG	1 cut(s)	28
NdeI	CATATG	1 cut(s)	517
NdeII	GATC	4 cut(s)	21, 268, 345, 468
NheI	GCTAGC	1 cut(s)	302
NlaIII	CATG	6 cut(s)	32, 127, 499, 530, 641, 685
NmeAIII	GCCGAG	1 cut(s)	519
NspV	TTCGAA	1 cut(s)	411
PagI	TCATGA	2 cut(s)	526, 637
PciSI	GCTCTTC	1 cut(s)	274
PdmI	GAANNNNTTC	1 cut(s)	407
PfeI	GAWTC	3 cut(s)	166, 445, 512
PfoI	TCCNGGA	1 cut(s)	584
PkrI	GCNGC	1 cut(s)	627
PleI	GAGTC	2 cut(s)	135, 211
PpsI	GAGTC	2 cut(s)	135, 211
Psp6I	CCWGG	3 cut(s)	236, 333, 584
PspGI	CCWGG	3 cut(s)	236, 333, 584
PspPI	GGNCC	2 cut(s)	70, 331
PsuI	RGATCY	1 cut(s)	268
RsaI	GTAC	2 cut(s)	146, 174
RsaNI	GTAC	2 cut(s)	145, 173
RseI	CAYNNNNRTG	1 cut(s)	548
SapI	GCTCTTC	1 cut(s)	274
SaqAI	TTAA	2 cut(s)	54, 591
SatI	GCNGC	1 cut(s)	626
Sau3AI	GATC	4 cut(s)	21, 268, 345, 468
Sau96I	GGNCC	2 cut(s)	70, 331
SchI	GAGTC	2 cut(s)	136, 212
ScrFI	CCNGG	3 cut(s)	238, 335, 586
SduI	GDGCHC	2 cut(s)	286, 495
SfaNI	GCATC	1 cut(s)	662
SfuI	TTCGAA	1 cut(s)	411
SmiMI	CAYNNNNRTG	1 cut(s)	548
SmlI	CTYRAG	2 cut(s)	140, 218
SmoI	CTYRAG	2 cut(s)	140, 218
Sse9I	AATT	3 cut(s)	398, 674, 685
SspI	AATATT	1 cut(s)	579
SspMI	CTAG	3 cut(s)	246, 303, 485
StyD4I	CCNGG	3 cut(s)	236, 333, 584
StyI	CCWWGG	1 cut(s)	28
TaaI	ACNGT	2 cut(s)	321, 390
TaqI	TCGA	1 cut(s)	411
TasI	AATT	3 cut(s)	398, 674, 685
TatI	WGTACW	2 cut(s)	144, 172
TfiI	GAWTC	3 cut(s)	166, 445, 512
Tru1I	TTAA	2 cut(s)	54, 591
Tru9I	TTAA	2 cut(s)	54, 591
TseI	GCWGC	1 cut(s)	625
TspDTI	ATGAA	6 cut(s)	246, 437, 504, 543, 654, 698
TspGWI	ACGGA	2 cut(s)	372, 432
XapI	RAATTY	1 cut(s)	685
XmiI	GTMKAC	1 cut(s)	481
XmnI	GAANNNNTTC	1 cut(s)	407
XspI	CTAG	3 cut(s)	246, 303, 485

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.