Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0000433

Physical Location & Seq

Genomic Coordinates Forward (+)

64434778 .. 64435525

Gene Structure 748 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00272270.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGGCAGAGAAAACCAGAGTGATCCTCCATGGAAGCAGACTTAGCCCTTATGTTAAGAGGGTGGAAATGGCCCTCAAAATCAAAGGCATACCCTATGAGTTTGTGCAAGAAGATTTGAAGAACAAGAGTCCATTGCTCCTCAAGTACAACCCTGTTCACAAAAGATTCCTGTACTTGTCCACAATGGAAAACCTCTTGCTGAGTCTCTTGTCATTCTTGAATATATTGATGAAACCTGGAAAACTAGCCCTCAACTTCTACCAGAAGATCCATATAGAAGAGCCCGAGTTCGCTTTTGGGCTAGCTTTCTGCACCAACAGTTATTTGAGGCCCTGGCCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004364 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009404 GO:0009407 GO:0009636 GO:0009987 GO:0016740 GO:0016765 GO:0019748 GO:0034641 GO:0042221 GO:0043603 GO:0044237 GO:0044248 GO:0044424 GO:0044464 GO:0050896 GO:0051186 GO:0071704 GO:0098754 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418

Pfam Domains

Protein Families

GST_C GST_N GST_N_3

Protein Analysis

113

Amino Acids

13.24

Weight (kDa)

9.64

Isoelectric Point (pI)

54.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GST_N	PF02798	7 - 54	6.9e-06	Glutathione S-transferase, N-terminal domain
GST_N_3	PF13417	9 - 54	1.3e-08	Glutathione S-transferase, N-terminal domain
GST_N_2	PF13409	15 - 53	1e-06	Glutathione S-transferase, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0000433)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62480 AT5G62480 AT5G62480
fragaria_vesca	FvH4_5g15010 FvH4_5g15020 FvH4_5g15100 FvH4_5g15110 FvH4_5g15120 FvH4_5g15121 FvH4_5g15121 FvH4_5g15121
malus_domestica	MD06G1192000.v1.1 MD06G1192100.v1.1
prunus_persica	Prupe.5G191500_v2.0.a1 Prupe.5G191600_v2.0.a1 Prupe.5G191800_v2.0.a1 Prupe.5G192500_v2.0.a1 Prupe.5G192600_v2.0.a1 Prupe.5G192800_v2.0.a1
pyrus_communis	pycom06g17020
rosa_chinensis	RchiOBHm_Chr7g0181061 RchiOBHm_Chr7g0181081 RchiOBHm_Chr7g0181091 RchiOBHm_Chr7g0181101 RchiOBHm_Chr7g0181111 RchiOBHm_Chr7g0181241 RchiOBHm_Chr7g0181251 RchiOBHm_Chr7g0181261
rosa_laevigata	RLG00000005202 RLG00000005203 RLG00000005204 RLG00000005213 RLG00000005214 RLG00000005215 RLG00000005216
rosa_multiflora	Rmu_co8113330.1_g000001 Rmu_co8221866.1_g000001 Rmu_sc0001147.1_g000011 Rmu_sc0001147.1_g000012 Rmu_sc0001147.1_g000013 Rmu_sc0001147.1_g000024 Rmu_sc0001147.1_g000025 Rmu_sc0007079.1_g000005 Rmu_sc0007079.1_g000009 Rmu_sc0007079.1_g000010 Rmu_sc0007079.1_g000011 Rmu_sc0007079.1_g000012 Rmu_sc0015707.1_g000001 Rmu_sc0041900.1_g000001
rosa_roxburghii	Rroxscaffold_3G00272160 Rroxscaffold_3G00272170 Rroxscaffold_3G00272180 Rroxscaffold_3G00272270 Rroxscaffold_3G00272280 Rroxscaffold_3G00272290 Rroxscaffold_3G00272300
rosa_rugosa	Rorug06G0438700 Rorug06G0438700 Rorug06G0438700 Rorug06G0439800 Rorug06G0439900 Rorug06G0440000
rosa_samantha	Rh7AG040100 Rh7AG040200 Rh7AG040300 Rh7AG040400 Rh7AG041500 Rh7AG041600 Rh7AG041700 Rh7BG039500 Rh7BG039600 Rh7BG039800 Rh7BG040800 Rh7CG041300 Rh7CG041400 Rh7CG041600 Rh7CG041700 Rh7CG041800 Rh7CG043000 Rh7CG043100 Rh7CG043200 Rh7DG039700 Rh7DG039900 Rh7DG040000 Rh7DG040100 Rh7DG040200 Rh7DG041300 Rh7DG041400 Rh7DG041500
rosa_wichuraiana	Rw7G003310 Rw7G003320 Rw7G003330 Rw7G003420 Rw7G003430 Rw7G003440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	16, 262
AfaI	GTAC	2 cut(s)	146, 173
AgsI	TTSAA	2 cut(s)	118, 220
AjnI	CCWGG	2 cut(s)	235, 332
AluBI	AGCT	1 cut(s)	305
AluI	AGCT	1 cut(s)	305
Alw26I	GTCTC	1 cut(s)	209
AlwI	GGATC	2 cut(s)	16, 262
Ama87I	CYCGRG	1 cut(s)	284
AoxI	GGCC	3 cut(s)	69, 329, 335
AspS9I	GGNCC	2 cut(s)	70, 330
AsuNHI	GCTAGC	1 cut(s)	301
AvaI	CYCGRG	1 cut(s)	284
BanII	GRGCYC	1 cut(s)	285
BciT130I	CCWGG	2 cut(s)	237, 334
BcoDI	GTCTC	1 cut(s)	209
BfaI	CTAG	2 cut(s)	245, 302
Bme1390I	CCNGG	2 cut(s)	237, 334
BmeT110I	CYCGRG	1 cut(s)	284
BmgT120I	GGNCC	2 cut(s)	70, 330
BmrFI	CCNGG	2 cut(s)	237, 334
BmtI	GCTAGC	1 cut(s)	305
BplI	GAGNNNNNCTC	2 cut(s)	9, 41
BpuEI	CTTGAG	1 cut(s)	125
BsaJI	CCNNGG	2 cut(s)	28, 332
Bse3DI	GCAATG	1 cut(s)	131
BseBI	CCWGG	2 cut(s)	237, 334
BseDI	CCNNGG	2 cut(s)	28, 332
BseMI	GCAATG	1 cut(s)	131
BseMII	CTCAG	1 cut(s)	191
BseRI	GAGGAG	1 cut(s)	128
BsgI	GTGCAG	1 cut(s)	295
BshFI	GGCC	3 cut(s)	71, 331, 337
BsiHKCI	CYCGRG	1 cut(s)	284
BsmAI	GTCTC	1 cut(s)	209
BsnI	GGCC	3 cut(s)	71, 331, 337
BsoBI	CYCGRG	1 cut(s)	284
Bsp1286I	GDGCHC	1 cut(s)	285
Bsp143I	GATC	2 cut(s)	21, 267
Bsp19I	CCATGG	1 cut(s)	28
BspANI	GGCC	3 cut(s)	71, 331, 337
BspCNI	CTCAG	1 cut(s)	192
BspOI	GCTAGC	1 cut(s)	305
BspPI	GGATC	2 cut(s)	16, 262
BspQI	GCTCTTC	1 cut(s)	273
BsrDI	GCAATG	1 cut(s)	131
BssECI	CCNNGG	2 cut(s)	28, 332
BssMI	GATC	2 cut(s)	21, 267
BssT1I	CCWWGG	1 cut(s)	28
Bst2UI	CCWGG	2 cut(s)	237, 334
Bst4CI	ACNGT	1 cut(s)	320
Bst6I	CTCTTC	1 cut(s)	273
BstC8I	GCNNGC	1 cut(s)	303
BstDEI	CTNAG	3 cut(s)	41, 200, 339
BstDSI	CCRYGG	1 cut(s)	28
BstKTI	GATC	2 cut(s)	24, 270
BstMAI	GTCTC	1 cut(s)	209
BstMBI	GATC	2 cut(s)	21, 267
BstMWI	GCNNNNNNNGC	1 cut(s)	42
BstNI	CCWGG	2 cut(s)	237, 334
BstSCI	CCNGG	2 cut(s)	235, 332
BstX2I	RGATCY	1 cut(s)	267
BstYI	RGATCY	1 cut(s)	267
BsuRI	GGCC	3 cut(s)	71, 331, 337
BtgI	CCRYGG	1 cut(s)	28
Cac8I	GCNNGC	1 cut(s)	303
Cfr13I	GGNCC	2 cut(s)	70, 330
Csp6I	GTAC	2 cut(s)	145, 172
CviAII	CATG	1 cut(s)	29
CviJI	RGCY	8 cut(s)	45, 71, 248, 283, 301, 305, 331, 337
CviKI_1	RGCY	8 cut(s)	45, 71, 248, 283, 301, 305, 331, 337
CviQI	GTAC	2 cut(s)	145, 172
DdeI	CTNAG	3 cut(s)	41, 200, 339
DpnI	GATC	2 cut(s)	23, 269
DpnII	GATC	2 cut(s)	21, 267
Eam1104I	CTCTTC	1 cut(s)	273
EarI	CTCTTC	1 cut(s)	273
Eco130I	CCWWGG	1 cut(s)	28
Eco24I	GRGCYC	1 cut(s)	285
Eco88I	CYCGRG	1 cut(s)	284
EcoO109I	RGGNCCY	1 cut(s)	330
EcoRII	CCWGG	2 cut(s)	235, 332
EcoT14I	CCWWGG	1 cut(s)	28
EcoT38I	GRGCYC	1 cut(s)	285
ErhI	CCWWGG	1 cut(s)	28
FaeI	CATG	1 cut(s)	32
FaiI	YATR	7 cut(s)	30, 51, 89, 96, 224, 273, 275
FatI	CATG	1 cut(s)	28
FriOI	GRGCYC	1 cut(s)	285
FspBI	CTAG	2 cut(s)	245, 302
HaeIII	GGCC	3 cut(s)	71, 331, 337
Hin1II	CATG	1 cut(s)	32
HinfI	GANTC	3 cut(s)	127, 165, 202
Hpy166II	GTNNAC	2 cut(s)	157, 180
Hpy188III	TCNNGA	1 cut(s)	217
Hpy8I	GTNNAC	2 cut(s)	157, 180
HpyCH4III	ACNGT	1 cut(s)	320
HpyCH4V	TGCA	2 cut(s)	106, 312
HpyF10VI	GCNNNNNNNGC	1 cut(s)	42
HpyF3I	CTNAG	3 cut(s)	41, 200, 339
Hsp92II	CATG	1 cut(s)	32
Kzo9I	GATC	2 cut(s)	21, 267
LguI	GCTCTTC	1 cut(s)	273
LmnI	GCTCC	1 cut(s)	141
LpnPI	CCDG	7 cut(s)	28, 165, 182, 222, 249, 275, 319
MaeI	CTAG	2 cut(s)	245, 302
MalI	GATC	2 cut(s)	23, 269
MboI	GATC	2 cut(s)	21, 267
MboII	GAAGA	4 cut(s)	122, 130, 277, 290
MflI	RGATCY	1 cut(s)	267
MhlI	GDGCHC	1 cut(s)	285
MlyI	GAGTC	2 cut(s)	136, 211
MnlI	CCTC	7 cut(s)	35, 51, 83, 149, 203, 260, 321
MseI	TTAA	1 cut(s)	54
MspR9I	CCNGG	2 cut(s)	237, 334
MvaI	CCWGG	2 cut(s)	237, 334
MwoI	GCNNNNNNNGC	1 cut(s)	42
NcoI	CCATGG	1 cut(s)	28
NdeII	GATC	2 cut(s)	21, 267
NheI	GCTAGC	1 cut(s)	301
NlaIII	CATG	1 cut(s)	32
PciSI	GCTCTTC	1 cut(s)	273
PfeI	GAWTC	1 cut(s)	165
PleI	GAGTC	2 cut(s)	135, 210
PpsI	GAGTC	2 cut(s)	135, 210
Psp6I	CCWGG	2 cut(s)	235, 332
PspGI	CCWGG	2 cut(s)	235, 332
PspPI	GGNCC	2 cut(s)	70, 330
PsuI	RGATCY	1 cut(s)	267
RsaI	GTAC	2 cut(s)	146, 173
RsaNI	GTAC	2 cut(s)	145, 172
SapI	GCTCTTC	1 cut(s)	273
SaqAI	TTAA	1 cut(s)	54
Sau3AI	GATC	2 cut(s)	21, 267
Sau96I	GGNCC	2 cut(s)	70, 330
SchI	GAGTC	2 cut(s)	136, 211
ScrFI	CCNGG	2 cut(s)	237, 334
SduI	GDGCHC	1 cut(s)	285
SetI	ASST	3 cut(s)	195, 238, 307
SmlI	CTYRAG	1 cut(s)	140
SmoI	CTYRAG	1 cut(s)	140
SspMI	CTAG	2 cut(s)	245, 302
StyD4I	CCNGG	2 cut(s)	235, 332
StyI	CCWWGG	1 cut(s)	28
TaaI	ACNGT	1 cut(s)	320
TatI	WGTACW	2 cut(s)	144, 171
TfiI	GAWTC	1 cut(s)	165
Tru1I	TTAA	1 cut(s)	54
Tru9I	TTAA	1 cut(s)	54
TspDTI	ATGAA	1 cut(s)	245
XspI	CTAG	2 cut(s)	245, 302

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.