Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000433

Physical Location & Seq

Genomic Coordinates Reverse (-)

25088527 .. 25089626

Gene Structure 1100 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G62480.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGGATGAAGAAGTTGAGAACAAAGTGATACTCCATGGATCATTCGCGAGTCCTTACAGCAAAAGGATTGAGTTAGCCCTAAGGCTTAAATCCATACCTTACCAATTCGTGCAAGAAGATCTCCAGAACAAGAGCCAAACCCTGCTCCGGTATAACCCGGTTCACAAGAAGATCCCGGTTCTTGTCCACAACGGTAAACCCATCTCTGAGTCCTTGTTTATCATTGAATACATCGACGAAACGTGGAGTAACGGTCCACATATTTTGCCAGAAGACCCTTATAGAAGATCTAAAGTCCGGTTTTGGGCTAACTACATCCAATTACATCTTTACGATTTGGTGATAAAAGTGGTGAAAAGCGAAGGAGAAGAGCAAAAGAAAGCTCTCACAGAAGTAAAGGAGAAGCTGAGCGTTATAGAGAAAGAAGGGCTTAAGGAGATTTTCTCTGACACTGATGGTGAACCAACTGTGACGAACGAGACCATGAGCCTCGTAGACATTGTGATGTGCACTTTGCTTAGCCCTTACAAGGCACACGAAGAAGTTTTGGGTCTGAAAATTATTGACCCAGAGATAGTTCCTGGTGTCTACGGGTGGATCAATGCTATAAACGAAACCAGCGTGGTCAAAGATCTAAGTCCTCCTTATGAACAAATCCTAGAGATTCTTCGGGCTTTCAGACAGATGTCTCTCTCTCCCGTTCTTGAAACTTATCAGTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004364 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009404 GO:0009407 GO:0009636 GO:0009987 GO:0016740 GO:0016765 GO:0019748 GO:0034641 GO:0042221 GO:0043603 GO:0044237 GO:0044248 GO:0044424 GO:0044464 GO:0050896 GO:0051186 GO:0071704 GO:0098754 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418

Pfam Domains

Protein Families

GST_C GST_N GST_N_3

Protein Analysis

240

Amino Acids

27.61

Weight (kDa)

5.27

Isoelectric Point (pI)

57.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GST_N	PF02798	9 - 80	8.7e-16	Glutathione S-transferase, N-terminal domain
GST_N_3	PF13417	11 - 81	3.7e-16	Glutathione S-transferase, N-terminal domain
GST_N_2	PF13409	16 - 81	5.2e-15	Glutathione S-transferase, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000433)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62480 AT5G62480 AT5G62480
fragaria_vesca	FvH4_5g15010 FvH4_5g15020 FvH4_5g15100 FvH4_5g15110 FvH4_5g15120 FvH4_5g15121 FvH4_5g15121 FvH4_5g15121
malus_domestica	MD06G1192000.v1.1 MD06G1192100.v1.1
prunus_persica	Prupe.5G191500_v2.0.a1 Prupe.5G191600_v2.0.a1 Prupe.5G191800_v2.0.a1 Prupe.5G192500_v2.0.a1 Prupe.5G192600_v2.0.a1 Prupe.5G192800_v2.0.a1
pyrus_communis	pycom06g17020
rosa_chinensis	RchiOBHm_Chr7g0181061 RchiOBHm_Chr7g0181081 RchiOBHm_Chr7g0181091 RchiOBHm_Chr7g0181101 RchiOBHm_Chr7g0181111 RchiOBHm_Chr7g0181241 RchiOBHm_Chr7g0181251 RchiOBHm_Chr7g0181261
rosa_laevigata	RLG00000005202 RLG00000005203 RLG00000005204 RLG00000005213 RLG00000005214 RLG00000005215 RLG00000005216
rosa_multiflora	Rmu_co8113330.1_g000001 Rmu_co8221866.1_g000001 Rmu_sc0001147.1_g000011 Rmu_sc0001147.1_g000012 Rmu_sc0001147.1_g000013 Rmu_sc0001147.1_g000024 Rmu_sc0001147.1_g000025 Rmu_sc0007079.1_g000005 Rmu_sc0007079.1_g000009 Rmu_sc0007079.1_g000010 Rmu_sc0007079.1_g000011 Rmu_sc0007079.1_g000012 Rmu_sc0015707.1_g000001 Rmu_sc0041900.1_g000001
rosa_roxburghii	Rroxscaffold_3G00272160 Rroxscaffold_3G00272170 Rroxscaffold_3G00272180 Rroxscaffold_3G00272270 Rroxscaffold_3G00272280 Rroxscaffold_3G00272290 Rroxscaffold_3G00272300
rosa_rugosa	Rorug06G0438700 Rorug06G0438700 Rorug06G0438700 Rorug06G0439800 Rorug06G0439900 Rorug06G0440000
rosa_samantha	Rh7AG040100 Rh7AG040200 Rh7AG040300 Rh7AG040400 Rh7AG041500 Rh7AG041600 Rh7AG041700 Rh7BG039500 Rh7BG039600 Rh7BG039800 Rh7BG040800 Rh7CG041300 Rh7CG041400 Rh7CG041600 Rh7CG041700 Rh7CG041800 Rh7CG043000 Rh7CG043100 Rh7CG043200 Rh7DG039700 Rh7DG039900 Rh7DG040000 Rh7DG040100 Rh7DG040200 Rh7DG041300 Rh7DG041400 Rh7DG041500
rosa_wichuraiana	Rw7G003310 Rw7G003320 Rw7G003330 Rw7G003420 Rw7G003430 Rw7G003440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	495, 588
AccII	CGCG	1 cut(s)	47
AclWI	GGATC	3 cut(s)	46, 166, 605
AfiI	CCNNNNNNNGG	3 cut(s)	147, 304, 529
AflII	CTTAAG	1 cut(s)	431
AgsI	TTSAA	2 cut(s)	227, 707
AjnI	CCWGG	1 cut(s)	580
AluBI	AGCT	2 cut(s)	383, 406
AluI	AGCT	2 cut(s)	383, 406
Alw21I	GWGCWC	1 cut(s)	512
Alw26I	GTCTC	2 cut(s)	473, 693
Alw44I	GTGCAC	1 cut(s)	508
AlwI	GGATC	3 cut(s)	46, 166, 605
ApaLI	GTGCAC	1 cut(s)	508
AspS9I	GGNCC	1 cut(s)	254
AsuC2I	CCSGG	2 cut(s)	158, 176
AsuHPI	GGTGA	3 cut(s)	352, 364, 470
AvaII	GGWCC	1 cut(s)	254
AxyI	CCTNAGG	1 cut(s)	80
BaeGI	GKGCMC	1 cut(s)	512
BbsI	GAAGAC	1 cut(s)	279
Bbv12I	GWGCWC	1 cut(s)	512
BccI	CCATC	2 cut(s)	209, 449
BciT130I	CCWGG	1 cut(s)	582
BcnI	CCSGG	2 cut(s)	158, 176
BcoDI	GTCTC	2 cut(s)	473, 693
BfaI	CTAG	1 cut(s)	659
BfrI	CTTAAG	1 cut(s)	431
BglII	AGATCT	3 cut(s)	118, 287, 631
BlpI	GCTNAGC	2 cut(s)	407, 518
Bme1390I	CCNGG	3 cut(s)	158, 176, 582
Bme18I	GGWCC	1 cut(s)	254
BmgT120I	GGNCC	1 cut(s)	254
BmrFI	CCNGG	3 cut(s)	158, 176, 582
BoxI	GACNNNNGTC	1 cut(s)	685
BpiI	GAAGAC	1 cut(s)	279
BplI	GAGNNNNNCTC	2 cut(s)	428, 460
BpmI	CTGGAG	1 cut(s)	107
Bpu1102I	GCTNAGC	2 cut(s)	407, 518
BpuMI	CCSGG	2 cut(s)	158, 176
BsaI	GGTCTC	1 cut(s)	473
BsaJI	CCNNGG	1 cut(s)	34
BsaWI	WCCGGW	2 cut(s)	147, 297
BsaXI	ACNNNNNCTCC	2 cut(s)	238, 268
Bsc4I	CCNNNNNNNGG	3 cut(s)	147, 304, 529
Bse21I	CCTNAGG	1 cut(s)	80
BseBI	CCWGG	1 cut(s)	582
BseDI	CCNNGG	1 cut(s)	34
BseGI	GGATG	2 cut(s)	10, 315
BseLI	CCNNNNNNNGG	3 cut(s)	147, 304, 529
BseMII	CTCAG	2 cut(s)	198, 398
BseSI	GKGCMC	1 cut(s)	512
Bsh1236I	CGCG	1 cut(s)	47
BsiHKAI	GWGCWC	1 cut(s)	512
BsiSI	CCGG	4 cut(s)	148, 158, 176, 298
BslI	CCNNNNNNNGG	3 cut(s)	147, 304, 529
BsmAI	GTCTC	2 cut(s)	473, 693
Bso31I	GGTCTC	1 cut(s)	473
Bsp1286I	GDGCHC	1 cut(s)	512
Bsp143I	GATC	6 cut(s)	38, 118, 171, 287, 597, 631
Bsp1720I	GCTNAGC	2 cut(s)	407, 518
Bsp19I	CCATGG	1 cut(s)	34
Bsp68I	TCGCGA	1 cut(s)	47
BspCNI	CTCAG	2 cut(s)	199, 399
BspFNI	CGCG	1 cut(s)	47
BspPI	GGATC	3 cut(s)	46, 166, 605
BspQI	GCTCTTC	1 cut(s)	363
BspTI	CTTAAG	1 cut(s)	431
BspTNI	GGTCTC	1 cut(s)	473
BssECI	CCNNGG	1 cut(s)	34
BssMI	GATC	6 cut(s)	38, 118, 171, 287, 597, 631
BssT1I	CCWWGG	1 cut(s)	34
Bst2UI	CCWGG	1 cut(s)	582
Bst4CI	ACNGT	3 cut(s)	194, 254, 469
Bst6I	CTCTTC	1 cut(s)	363
BstAFI	CTTAAG	1 cut(s)	431
BstDEI	CTNAG	5 cut(s)	80, 207, 407, 518, 635
BstDSI	CCRYGG	1 cut(s)	34
BstF5I	GGATG	2 cut(s)	10, 315
BstFNI	CGCG	1 cut(s)	47
BstKTI	GATC	6 cut(s)	41, 121, 174, 290, 600, 634
BstMAI	GTCTC	2 cut(s)	473, 693
BstMBI	GATC	6 cut(s)	38, 118, 171, 287, 597, 631
BstNI	CCWGG	1 cut(s)	582
BstPAI	GACNNNNGTC	1 cut(s)	685
BstSCI	CCNGG	3 cut(s)	156, 174, 580
BstSLI	GKGCMC	1 cut(s)	512
BstUI	CGCG	1 cut(s)	47
BstV2I	GAAGAC	1 cut(s)	279
BstX2I	RGATCY	4 cut(s)	118, 171, 287, 631
BstYI	RGATCY	4 cut(s)	118, 171, 287, 631
Bsu36I	CCTNAGG	1 cut(s)	80
BtgI	CCRYGG	1 cut(s)	34
BtsCI	GGATG	2 cut(s)	10, 315
BtsIMutI	CAGTG	1 cut(s)	450
BtuMI	TCGCGA	1 cut(s)	47
Cfr13I	GGNCC	1 cut(s)	254
CspCI	CAANNNNNGTGG	2 cut(s)	246, 281
CviAII	CATG	2 cut(s)	35, 484
DdeI	CTNAG	5 cut(s)	80, 207, 407, 518, 635
DpnI	GATC	6 cut(s)	40, 120, 173, 289, 599, 633
DpnII	GATC	6 cut(s)	38, 118, 171, 287, 597, 631
Eam1104I	CTCTTC	1 cut(s)	363
EarI	CTCTTC	1 cut(s)	363
Eco130I	CCWWGG	1 cut(s)	34
Eco31I	GGTCTC	1 cut(s)	473
Eco47I	GGWCC	1 cut(s)	254
Eco81I	CCTNAGG	1 cut(s)	80
EcoRII	CCWGG	1 cut(s)	580
EcoT14I	CCWWGG	1 cut(s)	34
ErhI	CCWWGG	1 cut(s)	34
FaeI	CATG	2 cut(s)	38, 487
FalI	AAGNNNNNCTT	4 cut(s)	414, 446, 628, 660
FatI	CATG	2 cut(s)	34, 483
FblI	GTMKAC	2 cut(s)	495, 588
FokI	GGATG	2 cut(s)	17, 302
FspBI	CTAG	1 cut(s)	659
GsuI	CTGGAG	1 cut(s)	107
HapII	CCGG	4 cut(s)	148, 158, 176, 298
Hin1II	CATG	2 cut(s)	38, 487
HinfI	GANTC	3 cut(s)	49, 209, 664
HpaII	CCGG	4 cut(s)	148, 158, 176, 298
HphI	GGTGA	3 cut(s)	352, 364, 470
Hpy166II	GTNNAC	8 cut(s)	163, 187, 197, 257, 461, 496, 510, 589
Hpy188I	TCNGA	4 cut(s)	208, 448, 555, 680
Hpy188III	TCNNGA	3 cut(s)	46, 124, 704
Hpy8I	GTNNAC	8 cut(s)	163, 187, 197, 257, 461, 496, 510, 589
Hpy99I	CGWCG	1 cut(s)	239
HpyAV	CCTTC	2 cut(s)	356, 419
HpyCH4III	ACNGT	3 cut(s)	194, 254, 469
HpyCH4IV	ACGT	1 cut(s)	242
HpyCH4V	TGCA	2 cut(s)	112, 510
HpyF3I	CTNAG	5 cut(s)	80, 207, 407, 518, 635
HpySE526I	ACGT	1 cut(s)	242
Hsp92II	CATG	2 cut(s)	38, 487
Kzo9I	GATC	6 cut(s)	38, 118, 171, 287, 597, 631
LguI	GCTCTTC	1 cut(s)	363
LmnI	GCTCC	1 cut(s)	150
MaeI	CTAG	1 cut(s)	659
MaeII	ACGT	1 cut(s)	242
MaeIII	GTNAC	2 cut(s)	248, 469
MalI	GATC	6 cut(s)	40, 120, 173, 289, 599, 633
MboI	GATC	6 cut(s)	38, 118, 171, 287, 597, 631
MboII	GAAGA	8 cut(s)	20, 128, 181, 284, 297, 380, 551, 659
MflI	RGATCY	4 cut(s)	118, 171, 287, 631
MhlI	GDGCHC	1 cut(s)	512
MluCI	AATT	3 cut(s)	104, 320, 558
MlyI	GAGTC	2 cut(s)	58, 218
MnlI	CCTC	2 cut(s)	500, 651
MseI	TTAA	2 cut(s)	87, 432
MslI	CAYNNNNRTG	1 cut(s)	503
MspCI	CTTAAG	1 cut(s)	431
MspI	CCGG	4 cut(s)	148, 158, 176, 298
MspR9I	CCNGG	3 cut(s)	158, 176, 582
MvaI	CCWGG	1 cut(s)	582
MvnI	CGCG	1 cut(s)	47
NciI	CCSGG	2 cut(s)	158, 176
NcoI	CCATGG	1 cut(s)	34
NdeII	GATC	6 cut(s)	38, 118, 171, 287, 597, 631
NlaIII	CATG	2 cut(s)	38, 487
NmuCI	GTSAC	1 cut(s)	469
NruI	TCGCGA	1 cut(s)	47
PciSI	GCTCTTC	1 cut(s)	363
PcsI	WCGNNNNNNNCGW	1 cut(s)	618
PfeI	GAWTC	1 cut(s)	664
PleI	GAGTC	2 cut(s)	57, 217
PpsI	GAGTC	2 cut(s)	57, 217
PshAI	GACNNNNGTC	1 cut(s)	685
Psp6I	CCWGG	1 cut(s)	580
PspGI	CCWGG	1 cut(s)	580
PspPI	GGNCC	1 cut(s)	254
PsuI	RGATCY	4 cut(s)	118, 171, 287, 631
RruI	TCGCGA	1 cut(s)	47
RseI	CAYNNNNRTG	1 cut(s)	503
SapI	GCTCTTC	1 cut(s)	363
SaqAI	TTAA	2 cut(s)	87, 432
Sau3AI	GATC	6 cut(s)	38, 118, 171, 287, 597, 631
Sau96I	GGNCC	1 cut(s)	254
SchI	GAGTC	2 cut(s)	58, 218
ScrFI	CCNGG	3 cut(s)	158, 176, 582
SduI	GDGCHC	1 cut(s)	512
SetI	ASST	4 cut(s)	100, 245, 385, 408
SinI	GGWCC	1 cut(s)	254
SmiMI	CAYNNNNRTG	1 cut(s)	503
SmlI	CTYRAG	1 cut(s)	431
SmoI	CTYRAG	1 cut(s)	431
Sse9I	AATT	3 cut(s)	104, 320, 558
SspMI	CTAG	1 cut(s)	659
StyD4I	CCNGG	3 cut(s)	156, 174, 580
StyI	CCWWGG	1 cut(s)	34
TaaI	ACNGT	3 cut(s)	194, 254, 469
TaiI	ACGT	1 cut(s)	245
TaqI	TCGA	1 cut(s)	234
TasI	AATT	3 cut(s)	104, 320, 558
TfiI	GAWTC	1 cut(s)	664
Tru1I	TTAA	2 cut(s)	87, 432
Tru9I	TTAA	2 cut(s)	87, 432
TscAI	CASTG	1 cut(s)	457
TseFI	GTSAC	1 cut(s)	469
Tsp45I	GTSAC	1 cut(s)	469
TspDTI	ATGAA	2 cut(s)	21, 663
TspRI	CASTG	1 cut(s)	457
Vha464I	CTTAAG	1 cut(s)	431
VneI	GTGCAC	1 cut(s)	508
VpaK11BI	GGWCC	1 cut(s)	254
XmiI	GTMKAC	2 cut(s)	495, 588
XspI	CTAG	1 cut(s)	659

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.