Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007079.1

Orthogroup ID

OG0000433

Physical Location & Seq

Genomic Coordinates Reverse (-)

39955 .. 40239

Gene Structure 285 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007079.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

atgaaggatttattcccagatgggattcctttgtcggttgacaacaagatcaatgtaggtctactagatgtgctcatgttttctgtctttgattcatatgaggctcatgaacaagtcctcggcataaaggtgatagaccctgagaagacaccagtaatattttcctggattaaagctataaatgagctacctgtggtgaaagagctgcatattcctcatgaaaaagtggtggcatctgtcaagctttttagaaaattggccatgaattcttcttcagatacttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004364 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009404 GO:0009407 GO:0009636 GO:0009987 GO:0016740 GO:0016765 GO:0019748 GO:0034641 GO:0042221 GO:0043603 GO:0044237 GO:0044248 GO:0044424 GO:0044464 GO:0050896 GO:0051186 GO:0071704 GO:0098754 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418

Pfam Domains

Protein Families

GST_C GST_N GST_N_3

Protein Analysis

94

Amino Acids

10.55

Weight (kDa)

5.49

Isoelectric Point (pI)

19.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000433)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62480 AT5G62480 AT5G62480
fragaria_vesca	FvH4_5g15010 FvH4_5g15020 FvH4_5g15100 FvH4_5g15110 FvH4_5g15120 FvH4_5g15121 FvH4_5g15121 FvH4_5g15121
malus_domestica	MD06G1192000.v1.1 MD06G1192100.v1.1
prunus_persica	Prupe.5G191500_v2.0.a1 Prupe.5G191600_v2.0.a1 Prupe.5G191800_v2.0.a1 Prupe.5G192500_v2.0.a1 Prupe.5G192600_v2.0.a1 Prupe.5G192800_v2.0.a1
pyrus_communis	pycom06g17020
rosa_chinensis	RchiOBHm_Chr7g0181061 RchiOBHm_Chr7g0181081 RchiOBHm_Chr7g0181091 RchiOBHm_Chr7g0181101 RchiOBHm_Chr7g0181111 RchiOBHm_Chr7g0181241 RchiOBHm_Chr7g0181251 RchiOBHm_Chr7g0181261
rosa_laevigata	RLG00000005202 RLG00000005203 RLG00000005204 RLG00000005213 RLG00000005214 RLG00000005215 RLG00000005216
rosa_multiflora	Rmu_co8113330.1_g000001 Rmu_co8221866.1_g000001 Rmu_sc0001147.1_g000011 Rmu_sc0001147.1_g000012 Rmu_sc0001147.1_g000013 Rmu_sc0001147.1_g000024 Rmu_sc0001147.1_g000025 Rmu_sc0007079.1_g000005 Rmu_sc0007079.1_g000009 Rmu_sc0007079.1_g000010 Rmu_sc0007079.1_g000011 Rmu_sc0007079.1_g000012 Rmu_sc0015707.1_g000001 Rmu_sc0041900.1_g000001
rosa_roxburghii	Rroxscaffold_3G00272160 Rroxscaffold_3G00272170 Rroxscaffold_3G00272180 Rroxscaffold_3G00272270 Rroxscaffold_3G00272280 Rroxscaffold_3G00272290 Rroxscaffold_3G00272300
rosa_rugosa	Rorug06G0438700 Rorug06G0438700 Rorug06G0438700 Rorug06G0439800 Rorug06G0439900 Rorug06G0440000
rosa_samantha	Rh7AG040100 Rh7AG040200 Rh7AG040300 Rh7AG040400 Rh7AG041500 Rh7AG041600 Rh7AG041700 Rh7BG039500 Rh7BG039600 Rh7BG039800 Rh7BG040800 Rh7CG041300 Rh7CG041400 Rh7CG041600 Rh7CG041700 Rh7CG041800 Rh7CG043000 Rh7CG043100 Rh7CG043200 Rh7DG039700 Rh7DG039900 Rh7DG040000 Rh7DG040100 Rh7DG040200 Rh7DG041300 Rh7DG041400 Rh7DG041500
rosa_wichuraiana	Rw7G003310 Rw7G003320 Rw7G003330 Rw7G003420 Rw7G003430 Rw7G003440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	61
AcoI	YGGCCR	1 cut(s)	258
AcsI	RAATTY	1 cut(s)	265
AcuI	CTGAAG	1 cut(s)	258
AjnI	CCWGG	1 cut(s)	164
AluBI	AGCT	4 cut(s)	176, 187, 205, 244
AluI	AGCT	4 cut(s)	176, 187, 205, 244
Alw21I	GWGCWC	1 cut(s)	75
AoxI	GGCC	1 cut(s)	258
ApeKI	GCWGC	1 cut(s)	205
ApoI	RAATTY	1 cut(s)	265
AsuHPI	GGTGA	2 cut(s)	142, 208
BalI	TGGCCA	1 cut(s)	260
BbsI	GAAGAC	1 cut(s)	152
Bbv12I	GWGCWC	1 cut(s)	75
BbvI	GCAGC	1 cut(s)	192
BccI	CCATC	1 cut(s)	14
BciT130I	CCWGG	1 cut(s)	166
BfaI	CTAG	1 cut(s)	65
BisI	GCNGC	1 cut(s)	206
BlsI	GCNGC	1 cut(s)	207
Bme1390I	CCNGG	1 cut(s)	166
BmrFI	CCNGG	1 cut(s)	166
BmsI	GCATC	1 cut(s)	242
BpiI	GAAGAC	1 cut(s)	152
BsaJI	CCNNGG	1 cut(s)	118
Bse1I	ACTGG	1 cut(s)	152
BseBI	CCWGG	1 cut(s)	166
BseDI	CCNNGG	1 cut(s)	118
BseMII	CTCAG	1 cut(s)	132
BseNI	ACTGG	1 cut(s)	152
BseXI	GCAGC	1 cut(s)	192
BshFI	GGCC	1 cut(s)	260
BsiHKAI	GWGCWC	1 cut(s)	75
BsnI	GGCC	1 cut(s)	260
Bsp1286I	GDGCHC	1 cut(s)	75
Bsp143I	GATC	1 cut(s)	48
BspANI	GGCC	1 cut(s)	260
BspCNI	CTCAG	1 cut(s)	133
BspHI	TCATGA	2 cut(s)	106, 217
BsrI	ACTGG	1 cut(s)	152
BssECI	CCNNGG	1 cut(s)	118
BssMI	GATC	1 cut(s)	48
Bst2UI	CCWGG	1 cut(s)	166
BstDEI	CTNAG	1 cut(s)	141
BstKTI	GATC	1 cut(s)	51
BstMBI	GATC	1 cut(s)	48
BstNI	CCWGG	1 cut(s)	166
BstSCI	CCNGG	1 cut(s)	164
BstV1I	GCAGC	1 cut(s)	192
BstV2I	GAAGAC	1 cut(s)	152
BsuRI	GGCC	1 cut(s)	260
CciI	TCATGA	2 cut(s)	106, 217
CviAII	CATG	4 cut(s)	76, 107, 218, 262
CviJI	RGCY	6 cut(s)	104, 176, 187, 205, 244, 260
CviKI_1	RGCY	6 cut(s)	104, 176, 187, 205, 244, 260
DdeI	CTNAG	1 cut(s)	141
DpnI	GATC	1 cut(s)	50
DpnII	GATC	1 cut(s)	48
EaeI	YGGCCR	1 cut(s)	258
Eco57I	CTGAAG	1 cut(s)	258
EcoRI	GAATTC	1 cut(s)	265
EcoRII	CCWGG	1 cut(s)	164
FaeI	CATG	4 cut(s)	79, 110, 221, 265
FaiI	YATR	9 cut(s)	77, 97, 99, 108, 125, 179, 210, 219, 263
FatI	CATG	4 cut(s)	75, 106, 217, 261
FauNDI	CATATG	1 cut(s)	97
FblI	GTMKAC	1 cut(s)	61
Fnu4HI	GCNGC	1 cut(s)	206
Fsp4HI	GCNGC	1 cut(s)	206
FspBI	CTAG	1 cut(s)	65
GluI	GCNGC	1 cut(s)	206
HaeIII	GGCC	1 cut(s)	260
Hin1II	CATG	4 cut(s)	79, 110, 221, 265
HincII	GTYRAC	1 cut(s)	40
HindII	GTYRAC	1 cut(s)	40
HindIII	AAGCTT	1 cut(s)	242
HinfI	GANTC	2 cut(s)	25, 92
HphI	GGTGA	2 cut(s)	142, 208
Hpy166II	GTNNAC	2 cut(s)	40, 62
Hpy188I	TCNGA	1 cut(s)	277
Hpy188III	TCNNGA	2 cut(s)	107, 218
Hpy8I	GTNNAC	2 cut(s)	40, 62
HpyCH4V	TGCA	1 cut(s)	208
HpyF3I	CTNAG	1 cut(s)	141
Hsp92II	CATG	4 cut(s)	79, 110, 221, 265
Kzo9I	GATC	1 cut(s)	48
LpnPI	CCDG	6 cut(s)	30, 151, 153, 165, 178, 204
Lsp1109I	GCAGC	1 cut(s)	192
LweI	GCATC	1 cut(s)	242
MaeI	CTAG	1 cut(s)	65
MalI	GATC	1 cut(s)	50
MboI	GATC	1 cut(s)	48
MboII	GAAGA	3 cut(s)	157, 261, 264
MhlI	GDGCHC	1 cut(s)	75
MlsI	TGGCCA	1 cut(s)	260
MluCI	AATT	2 cut(s)	254, 265
MluNI	TGGCCA	1 cut(s)	260
MnlI	CCTC	3 cut(s)	94, 128, 225
Mox20I	TGGCCA	1 cut(s)	260
MscI	TGGCCA	1 cut(s)	260
MseI	TTAA	1 cut(s)	171
MslI	CAYNNNNRTG	1 cut(s)	128
Msp20I	TGGCCA	1 cut(s)	260
MspR9I	CCNGG	1 cut(s)	166
MvaI	CCWGG	1 cut(s)	166
NdeI	CATATG	1 cut(s)	97
NdeII	GATC	1 cut(s)	48
NlaIII	CATG	4 cut(s)	79, 110, 221, 265
NmeAIII	GCCGAG	1 cut(s)	99
PagI	TCATGA	2 cut(s)	106, 217
PfeI	GAWTC	2 cut(s)	25, 92
PfoI	TCCNGGA	1 cut(s)	164
PkrI	GCNGC	1 cut(s)	207
Psp6I	CCWGG	1 cut(s)	164
PspGI	CCWGG	1 cut(s)	164
RseI	CAYNNNNRTG	1 cut(s)	128
SaqAI	TTAA	1 cut(s)	171
SatI	GCNGC	1 cut(s)	206
Sau3AI	GATC	1 cut(s)	48
ScrFI	CCNGG	1 cut(s)	166
SduI	GDGCHC	1 cut(s)	75
SetI	ASST	7 cut(s)	61, 132, 178, 189, 193, 207, 246
SfaNI	GCATC	1 cut(s)	242
SmiMI	CAYNNNNRTG	1 cut(s)	128
Sse9I	AATT	2 cut(s)	254, 265
SspI	AATATT	1 cut(s)	159
SspMI	CTAG	1 cut(s)	65
StyD4I	CCNGG	1 cut(s)	164
TasI	AATT	2 cut(s)	254, 265
TfiI	GAWTC	2 cut(s)	25, 92
Tru1I	TTAA	1 cut(s)	171
Tru9I	TTAA	1 cut(s)	171
TseI	GCWGC	1 cut(s)	205
TspDTI	ATGAA	5 cut(s)	17, 84, 123, 234, 278
XapI	RAATTY	1 cut(s)	265
XmiI	GTMKAC	1 cut(s)	61
XspI	CTAG	1 cut(s)	65

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.