Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0020165.1

Orthogroup ID

OG0012117

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 484

Gene Structure 484 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0020165.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

gtacttttgaatgaagatgaagtttctgaactggaatcagaaagcttaacattgaagccactagatgaaagagaagtgaaccgtattaaaccgaatcctagtcttaaagtgcaaccactctttgtggatccaggctccagaaagaagcctgttgtgaaaggtaggaaggaaaacaagagcccaaccaaaggcttgtgcttagagataactgggagggtgcagcatgtcaacaatgatatgaaagatcttgtggctgacgatcagttggagacaacctcaaatgaaaatttttctcaagggccttctataagtggagttctgcctgatgacgatgatgggggaaaatgttctttagactaccgctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002020 GO:0003674 GO:0003712 GO:0003713 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006355 GO:0006810 GO:0007154 GO:0007165 GO:0008134 GO:0008150 GO:0009719 GO:0009725 GO:0009755 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0014070 GO:0016604 GO:0016922 GO:0019219 GO:0019222 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0030331 GO:0030518 GO:0030520 GO:0030522 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031594 GO:0031974 GO:0031981 GO:0032870 GO:0032991 GO:0033993 GO:0035035 GO:0035257 GO:0035258 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043401 GO:0044389 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045202 GO:0045595 GO:0045661 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048545 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051179 GO:0051234 GO:0051252 GO:0051254 GO:0051427 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0070887 GO:0071310 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0080090 GO:0099053 GO:0140110 GO:1901998 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2HC5

Protein Analysis

121

Amino Acids

13.4

Weight (kDa)

4.82

Isoelectric Point (pI)

25.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012117)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47610
fragaria_vesca	FvH4_5g15050 FvH4_5g15050
malus_domestica	MD06G1192400.v1.1 MD14G1199100.v1.1
prunus_persica	Prupe.5G192200_v2.0.a1
pyrus_communis	pycom06g17050 pycom14g16520
rosa_chinensis	RchiOBHm_Chr7g0181151
rosa_laevigata	RLG00000005209
rosa_multiflora	Rmu_sc0020165.1_g000001 Rmu_sc0034479.1_g000001
rosa_roxburghii	Rroxscaffold_3G00272230
rosa_rugosa	Rorug06G0438700
rosa_samantha	Rh7AG040800 Rh7BG040200 Rh7CG042200 Rh7DG040600
rosa_wichuraiana	Rw7G003370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	361
AclWI	GGATC	2 cut(s)	122, 135
AcsI	RAATTY	1 cut(s)	286
AfaI	GTAC	1 cut(s)	3
AfiI	CCNNNNNNNGG	1 cut(s)	188
AgsI	TTSAA	2 cut(s)	10, 55
AjnI	CCWGG	1 cut(s)	130
AluBI	AGCT	1 cut(s)	45
AluI	AGCT	1 cut(s)	45
Alw26I	GTCTC	1 cut(s)	263
AlwI	GGATC	2 cut(s)	122, 135
AoxI	GGCC	1 cut(s)	299
ApeKI	GCWGC	1 cut(s)	220
ApoI	RAATTY	1 cut(s)	286
Asp700I	GAANNNNTTC	1 cut(s)	346
AspS9I	GGNCC	1 cut(s)	299
BamHI	GGATCC	1 cut(s)	127
BanII	GRGCYC	1 cut(s)	182
BbvI	GCAGC	1 cut(s)	232
BccI	CCATC	1 cut(s)	329
BciT130I	CCWGG	1 cut(s)	132
BcoDI	GTCTC	1 cut(s)	263
BfaI	CTAG	2 cut(s)	62, 99
BglII	AGATCT	1 cut(s)	244
BisI	GCNGC	1 cut(s)	221
BlsI	GCNGC	1 cut(s)	222
Bme1390I	CCNGG	1 cut(s)	132
BmgT120I	GGNCC	1 cut(s)	299
BmiI	GGNNCC	2 cut(s)	129, 136
BmrFI	CCNGG	1 cut(s)	132
BmrI	ACTGGG	1 cut(s)	219
BmuI	ACTGGG	1 cut(s)	219
BplI	GAGNNNNNCTC	2 cut(s)	260, 292
BpmI	CTGGAG	1 cut(s)	121
BpuEI	CTTGAG	1 cut(s)	279
Bsc4I	CCNNNNNNNGG	1 cut(s)	188
Bse1I	ACTGG	2 cut(s)	36, 214
BseBI	CCWGG	1 cut(s)	132
BseLI	CCNNNNNNNGG	1 cut(s)	188
BseNI	ACTGG	2 cut(s)	36, 214
BseXI	GCAGC	1 cut(s)	232
BsgI	GTGCAG	1 cut(s)	239
BshFI	GGCC	1 cut(s)	301
BslI	CCNNNNNNNGG	1 cut(s)	188
BsmAI	GTCTC	1 cut(s)	263
BsnI	GGCC	1 cut(s)	301
Bsp1286I	GDGCHC	1 cut(s)	182
Bsp143I	GATC	3 cut(s)	127, 244, 259
BspACI	CCGC	1 cut(s)	361
BspANI	GGCC	1 cut(s)	301
BspLI	GGNNCC	2 cut(s)	129, 136
BspPI	GGATC	2 cut(s)	122, 135
BsrI	ACTGG	2 cut(s)	36, 214
BssMI	GATC	3 cut(s)	127, 244, 259
Bst2UI	CCWGG	1 cut(s)	132
Bst4CI	ACNGT	1 cut(s)	83
BstDEI	CTNAG	1 cut(s)	199
BstKTI	GATC	3 cut(s)	130, 247, 262
BstMAI	GTCTC	1 cut(s)	263
BstMBI	GATC	3 cut(s)	127, 244, 259
BstNI	CCWGG	1 cut(s)	132
BstNSI	RCATGY	1 cut(s)	227
BstSCI	CCNGG	1 cut(s)	130
BstV1I	GCAGC	1 cut(s)	232
BstX2I	RGATCY	2 cut(s)	127, 244
BstYI	RGATCY	2 cut(s)	127, 244
BsuRI	GGCC	1 cut(s)	301
Cfr13I	GGNCC	1 cut(s)	299
Csp6I	GTAC	1 cut(s)	2
CviAII	CATG	1 cut(s)	224
CviJI	RGCY	8 cut(s)	45, 58, 135, 148, 180, 192, 254, 301
CviKI_1	RGCY	8 cut(s)	45, 58, 135, 148, 180, 192, 254, 301
CviQI	GTAC	1 cut(s)	2
DdeI	CTNAG	1 cut(s)	199
DpnI	GATC	3 cut(s)	129, 246, 261
DpnII	GATC	3 cut(s)	127, 244, 259
Eco24I	GRGCYC	1 cut(s)	182
EcoO109I	RGGNCCY	1 cut(s)	299
EcoRII	CCWGG	1 cut(s)	130
EcoT38I	GRGCYC	1 cut(s)	182
FaeI	CATG	1 cut(s)	227
FaiI	YATR	3 cut(s)	225, 239, 308
FatI	CATG	1 cut(s)	223
Fnu4HI	GCNGC	1 cut(s)	221
FriOI	GRGCYC	1 cut(s)	182
Fsp4HI	GCNGC	1 cut(s)	221
FspBI	CTAG	2 cut(s)	62, 99
GluI	GCNGC	1 cut(s)	221
GsuI	CTGGAG	1 cut(s)	121
HaeIII	GGCC	1 cut(s)	301
Hin1II	CATG	1 cut(s)	227
HincII	GTYRAC	1 cut(s)	229
HindII	GTYRAC	1 cut(s)	229
HindIII	AAGCTT	1 cut(s)	43
HinfI	GANTC	2 cut(s)	35, 94
Hpy166II	GTNNAC	2 cut(s)	79, 229
Hpy188I	TCNGA	2 cut(s)	28, 40
Hpy188III	TCNNGA	1 cut(s)	138
Hpy8I	GTNNAC	2 cut(s)	79, 229
HpyAV	CCTTC	2 cut(s)	160, 312
HpyCH4III	ACNGT	1 cut(s)	83
HpyCH4V	TGCA	2 cut(s)	112, 220
HpyF3I	CTNAG	1 cut(s)	199
Hsp92II	CATG	1 cut(s)	227
Kzo9I	GATC	3 cut(s)	127, 244, 259
LmnI	GCTCC	1 cut(s)	140
LpnPI	CCDG	7 cut(s)	17, 117, 144, 151, 162, 195, 336
Lsp1109I	GCAGC	1 cut(s)	232
MaeI	CTAG	2 cut(s)	62, 99
MalI	GATC	3 cut(s)	129, 246, 261
MboI	GATC	3 cut(s)	127, 244, 259
MboII	GAAGA	1 cut(s)	26
MflI	RGATCY	2 cut(s)	127, 244
MhlI	GDGCHC	1 cut(s)	182
MluCI	AATT	1 cut(s)	286
MmeI	TCCRAC	1 cut(s)	246
MnlI	CCTC	2 cut(s)	207, 286
MroXI	GAANNNNTTC	1 cut(s)	346
MseI	TTAA	3 cut(s)	47, 87, 105
MspR9I	CCNGG	1 cut(s)	132
MvaI	CCWGG	1 cut(s)	132
NdeII	GATC	3 cut(s)	127, 244, 259
NlaIII	CATG	1 cut(s)	227
NlaIV	GGNNCC	2 cut(s)	129, 136
NspI	RCATGY	1 cut(s)	227
PdmI	GAANNNNTTC	1 cut(s)	346
PfeI	GAWTC	2 cut(s)	35, 94
PkrI	GCNGC	1 cut(s)	222
Psp6I	CCWGG	1 cut(s)	130
PspGI	CCWGG	1 cut(s)	130
PspN4I	GGNNCC	2 cut(s)	129, 136
PspPI	GGNCC	1 cut(s)	299
PsuI	RGATCY	2 cut(s)	127, 244
RsaI	GTAC	1 cut(s)	3
RsaNI	GTAC	1 cut(s)	2
SaqAI	TTAA	3 cut(s)	47, 87, 105
SatI	GCNGC	1 cut(s)	221
Sau3AI	GATC	3 cut(s)	127, 244, 259
Sau96I	GGNCC	1 cut(s)	299
ScrFI	CCNGG	1 cut(s)	132
SduI	GDGCHC	1 cut(s)	182
SetI	ASST	3 cut(s)	47, 163, 278
SmlI	CTYRAG	1 cut(s)	294
SmoI	CTYRAG	1 cut(s)	294
Sse9I	AATT	1 cut(s)	286
SsiI	CCGC	1 cut(s)	361
SspMI	CTAG	2 cut(s)	62, 99
StyD4I	CCNGG	1 cut(s)	130
TaaI	ACNGT	1 cut(s)	83
TasI	AATT	1 cut(s)	286
TfiI	GAWTC	2 cut(s)	35, 94
Tru1I	TTAA	3 cut(s)	47, 87, 105
Tru9I	TTAA	3 cut(s)	47, 87, 105
TseI	GCWGC	1 cut(s)	220
TspDTI	ATGAA	5 cut(s)	27, 33, 81, 254, 297
XapI	RAATTY	1 cut(s)	286
XceI	RCATGY	1 cut(s)	227
XmnI	GAANNNNTTC	1 cut(s)	346
XspI	CTAG	2 cut(s)	62, 99

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.