AT3G47630

Mitochondrial matrix Mmp37

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0003914
Physical Location & Seq
Reverse (-)
17562941 .. 17565685
2745 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G47630.1

Sequence Viewer

Length: 963 bp
ATGAAAACTCTCTGTGATGATCTTTCCTGTTTGCTAATTGACTGTAAAAATGTGACCTTTGCTTTTGTGCAGTCTAAGATGGTGGACTATATCCTTGGAGTCTCTGATCCTATAAAATGGCATTCTGCGAATCTGAAAATGAATTCAGATCACTATGCTTCATGGATGGTTCACCTTGGTGGAGCTAGGCTGATTACAAATGTTGCCGATAAAGTAGGAGTTGGAGTTCACTTCAATCCGTTTGTCAACTGGAACGACAGGAAGCTCAAGTATGGAGTTGTTCGGATGCATGACCTAGTACAGGACATACTGGACTGGAAGAGGTTCTACTTGAGTGGCCGTTTACAAAAACCTGTTCATATGCTTGTTGATAATCTGGACATAGAGGATGTGAATTCTGTTAATAAGAGAGCTGCAATATCTGCAGCTCTTCTTCTCTTGCCATCGAAATTCACCGAGGAAGATCTATACGCCAAAATATGCAGCCTTTCTTACATGGGAGACTTGCGCATGTTTTTTGCAGAGGACACTAATAAGGTGAACAAGATTGTGAAGGGACAATTTGATCTTTTCCAGTCGATGTATAAGCCTTTTCTTGAAGAGTGCGAGACCAAAAACTTATTGAGATTCTCATCGGCTGAAGCTAGTCACACTAAATTAGTTCAGGATTCTAGCCTTTCAGCAACACGTTCTCTGGTCTCTTCTCTTCCTGCATCAGTGAGAAGCCAAATGGGGAAGTCACTCGGGGAGAAGAAATTCGTGAGCGAGACCGGTAGAGTTATGGGAGAAGTTTGTATAAGTTCGAGAGAAGAAGCAGCGAAATGTATGGAGAAAGTCATGAGGAGAAGGGTAATGGTTTCAAGCGGAAGACAAGCTGTGTCTGGTTTCTTGGCTGCAGGAGCTATTAATGCAACAATGTATCTTTCCCAAAAAATGCGCAAAGCTTGGAACTCTCGTGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Mmp37

Protein Analysis

320

Amino Acids

36.04

Weight (kDa)

9.28

Isoelectric Point (pI)

54.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Tam41_Mmp37 PF09139 24 - 314 1.9e-99 Phosphatidate cytidylyltransferase, mitochondrial
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 2 cut(s) 509, 938
AciI CCGC 1 cut(s) 864
AclWI GGATC 1 cut(s) 101
AcoI YGGCCR 1 cut(s) 337
AcsI RAATTY 4 cut(s) 142, 394, 449, 755
AcuI CTGAAG 1 cut(s) 660
AfaI GTAC 1 cut(s) 300
AfiI CCNNNNNNNGG 1 cut(s) 301
AflIII ACRYGT 1 cut(s) 686
AgeI ACCGGT 1 cut(s) 770
AgsI TTSAA 3 cut(s) 235, 599, 861
AleI CACNNNNGTG 1 cut(s) 177
AloI GAACNNNNNNTCC 2 cut(s) 210, 242
AluBI AGCT 8 cut(s) 185, 265, 413, 428, 644, 875, 902, 944
AluI AGCT 8 cut(s) 185, 265, 413, 428, 644, 875, 902, 944
Alw26I GTCTC 5 cut(s) 106, 495, 602, 703, 761
AlwI GGATC 1 cut(s) 101
Ama87I CYCGRG 1 cut(s) 743
AoxI GGCC 1 cut(s) 337
ApeKI GCWGC 5 cut(s) 413, 425, 483, 815, 893
ApoI RAATTY 4 cut(s) 142, 394, 449, 755
AseI ATTAAT 1 cut(s) 906
AsiGI ACCGGT 1 cut(s) 770
Asp700I GAANNNNTTC 2 cut(s) 323, 755
AspLEI GCGC 2 cut(s) 510, 939
AsuHPI GGTGA 3 cut(s) 164, 445, 550
AvaI CYCGRG 1 cut(s) 743
BarI GAAGNNNNNNTAC 2 cut(s) 311, 343
BauI CACGAG 1 cut(s) 954
BbsI GAAGAC 1 cut(s) 874
BbvI GCAGC 5 cut(s) 400, 437, 495, 827, 880
BccI CCATC 3 cut(s) 73, 160, 451
BceAI ACGGC 1 cut(s) 324
BcoDI GTCTC 5 cut(s) 106, 495, 602, 703, 761
BfaI CTAG 4 cut(s) 186, 296, 645, 672
BfmI CTRYAG 2 cut(s) 423, 894
BglII AGATCT 1 cut(s) 463
BisI GCNGC 5 cut(s) 414, 426, 484, 816, 894
BlsI GCNGC 5 cut(s) 415, 427, 485, 817, 895
BmeT110I CYCGRG 1 cut(s) 743
BmsI GCATC 2 cut(s) 276, 722
BpiI GAAGAC 1 cut(s) 874
BpuEI CTTGAG 2 cut(s) 251, 352
BsaBI GATNNNNATC 1 cut(s) 631
BsaI GGTCTC 3 cut(s) 602, 703, 761
BsaJI CCNNGG 3 cut(s) 94, 175, 456
BsaWI WCCGGW 1 cut(s) 770
BsaXI ACNNNNNCTCC 2 cut(s) 210, 240
Bsc4I CCNNNNNNNGG 1 cut(s) 301
Bse118I RCCGGY 1 cut(s) 770
Bse1I ACTGG 4 cut(s) 254, 315, 320, 574
Bse8I GATNNNNATC 1 cut(s) 631
BseDI CCNNGG 3 cut(s) 94, 175, 456
BseGI GGATG 3 cut(s) 171, 291, 394
BseJI GATNNNNATC 1 cut(s) 631
BseLI CCNNNNNNNGG 1 cut(s) 301
BseNI ACTGG 4 cut(s) 254, 315, 320, 574
BseRI GAGGAG 1 cut(s) 856
BseXI GCAGC 5 cut(s) 400, 437, 495, 827, 880
BsgI GTGCAG 1 cut(s) 89
BshFI GGCC 1 cut(s) 339
BshTI ACCGGT 1 cut(s) 770
BsiHKCI CYCGRG 1 cut(s) 743
BsiSI CCGG 1 cut(s) 771
BslFI GGGAC 1 cut(s) 570
BslI CCNNNNNNNGG 1 cut(s) 301
BsmAI GTCTC 5 cut(s) 106, 495, 602, 703, 761
BsmFI GGGAC 1 cut(s) 570
BsmI GAATGC 1 cut(s) 121
BsnI GGCC 1 cut(s) 339
Bso31I GGTCTC 3 cut(s) 602, 703, 761
BsoBI CYCGRG 1 cut(s) 743
Bsp143I GATC 5 cut(s) 19, 106, 148, 463, 565
BspACI CCGC 1 cut(s) 864
BspANI GGCC 1 cut(s) 339
BspHI TCATGA 1 cut(s) 837
BspMAI CTGCAG 2 cut(s) 427, 898
BspPI GGATC 1 cut(s) 101
BspQI GCTCTTC 1 cut(s) 435
BspTNI GGTCTC 3 cut(s) 602, 703, 761
BsrFI RCCGGY 1 cut(s) 770
BsrI ACTGG 4 cut(s) 254, 315, 320, 574
BssAI RCCGGY 1 cut(s) 770
BssECI CCNNGG 3 cut(s) 94, 175, 456
BssMI GATC 5 cut(s) 19, 106, 148, 463, 565
BssSI CACGAG 1 cut(s) 954
BssT1I CCWWGG 2 cut(s) 94, 175
Bst2BI CACGAG 1 cut(s) 954
Bst4CI ACNGT 1 cut(s) 44
Bst6I CTCTTC 5 cut(s) 314, 435, 594, 706, 711
BstAPI GCANNNNNTGC 1 cut(s) 422
BstDEI CTNAG 1 cut(s) 75
BstENI CCTNNNNNAGG 1 cut(s) 299
BstF5I GGATG 3 cut(s) 171, 291, 394
BstHHI GCGC 2 cut(s) 510, 939
BstKTI GATC 5 cut(s) 22, 109, 151, 466, 568
BstMAI GTCTC 5 cut(s) 106, 495, 602, 703, 761
BstMBI GATC 5 cut(s) 19, 106, 148, 463, 565
BstMWI GCNNNNNNNGC 3 cut(s) 422, 899, 908
BstNSI RCATGY 1 cut(s) 514
BstSFI CTRYAG 2 cut(s) 423, 894
BstV1I GCAGC 5 cut(s) 400, 437, 495, 827, 880
BstV2I GAAGAC 1 cut(s) 874
BstX2I RGATCY 1 cut(s) 463
BstYI RGATCY 1 cut(s) 463
BsuRI GGCC 1 cut(s) 339
BtsCI GGATG 3 cut(s) 171, 291, 394
BtsIMutI CAGTG 1 cut(s) 723
CciI TCATGA 1 cut(s) 837
CfoI GCGC 2 cut(s) 510, 939
Cfr10I RCCGGY 1 cut(s) 770
Csp6I GTAC 1 cut(s) 299
CspAI ACCGGT 1 cut(s) 770
CviAII CATG 6 cut(s) 162, 290, 496, 511, 838, 960
CviQI GTAC 1 cut(s) 299
DdeI CTNAG 1 cut(s) 75
DpnI GATC 5 cut(s) 21, 108, 150, 465, 567
DpnII GATC 5 cut(s) 19, 106, 148, 463, 565
EaeI YGGCCR 1 cut(s) 337
Eam1104I CTCTTC 5 cut(s) 314, 435, 594, 706, 711
EarI CTCTTC 5 cut(s) 314, 435, 594, 706, 711
Eco130I CCWWGG 2 cut(s) 94, 175
Eco31I GGTCTC 3 cut(s) 602, 703, 761
Eco57I CTGAAG 1 cut(s) 660
Eco88I CYCGRG 1 cut(s) 743
EcoNI CCTNNNNNAGG 1 cut(s) 299
EcoRI GAATTC 2 cut(s) 142, 394
EcoT14I CCWWGG 2 cut(s) 94, 175
EcoT22I ATGCAT 1 cut(s) 291
ErhI CCWWGG 2 cut(s) 94, 175
FaeI CATG 6 cut(s) 165, 293, 499, 514, 841, 963
FaqI GGGAC 1 cut(s) 570
FatI CATG 6 cut(s) 161, 289, 495, 510, 837, 959
FauNDI CATATG 1 cut(s) 360
Fnu4HI GCNGC 5 cut(s) 414, 426, 484, 816, 894
FokI GGATG 3 cut(s) 178, 298, 401
Fsp4HI GCNGC 5 cut(s) 414, 426, 484, 816, 894
FspBI CTAG 4 cut(s) 186, 296, 645, 672
FspI TGCGCA 2 cut(s) 509, 938
GlaI GCGC 2 cut(s) 509, 938
GluI GCNGC 5 cut(s) 414, 426, 484, 816, 894
HaeIII GGCC 1 cut(s) 339
HapII CCGG 1 cut(s) 771
HhaI GCGC 2 cut(s) 510, 939
Hin1II CATG 6 cut(s) 165, 293, 499, 514, 841, 963
Hin6I GCGC 2 cut(s) 508, 937
HinP1I GCGC 2 cut(s) 508, 937
HincII GTYRAC 1 cut(s) 247
HindII GTYRAC 1 cut(s) 247
HindIII AAGCTT 1 cut(s) 942
HinfI GANTC 4 cut(s) 99, 130, 627, 668
HpaII CCGG 1 cut(s) 771
HphI GGTGA 3 cut(s) 164, 445, 550
Hpy166II GTNNAC 6 cut(s) 85, 172, 229, 247, 344, 541
Hpy188I TCNGA 4 cut(s) 106, 135, 148, 285
Hpy188III TCNNGA 6 cut(s) 377, 596, 665, 760, 804, 838
Hpy8I GTNNAC 6 cut(s) 85, 172, 229, 247, 344, 541
HpyAV CCTTC 2 cut(s) 547, 840
HpyCH4III ACNGT 1 cut(s) 44
HpyCH4IV ACGT 1 cut(s) 688
HpyF10VI GCNNNNNNNGC 3 cut(s) 422, 899, 908
HpyF3I CTNAG 1 cut(s) 75
HpySE526I ACGT 1 cut(s) 688
Hsp92II CATG 6 cut(s) 165, 293, 499, 514, 841, 963
HspAI GCGC 2 cut(s) 508, 937
Kzo9I GATC 5 cut(s) 19, 106, 148, 463, 565
LguI GCTCTTC 1 cut(s) 435
LmnI GCTCC 2 cut(s) 182, 899
Lsp1109I GCAGC 5 cut(s) 400, 437, 495, 827, 880
LweI GCATC 2 cut(s) 276, 722
MaeI CTAG 4 cut(s) 186, 296, 645, 672
MaeII ACGT 1 cut(s) 688
MaeIII GTNAC 3 cut(s) 52, 647, 738
MalI GATC 5 cut(s) 21, 108, 150, 465, 567
MboI GATC 5 cut(s) 19, 106, 148, 463, 565
MflI RGATCY 1 cut(s) 463
MluCI AATT 7 cut(s) 36, 142, 394, 449, 560, 656, 755
MlyI GAGTC 1 cut(s) 108
MmeI TCCRAC 1 cut(s) 202
MnlI CCTC 5 cut(s) 315, 379, 451, 517, 834
Mph1103I ATGCAT 1 cut(s) 291
MroXI GAANNNNTTC 2 cut(s) 323, 755
MseI TTAA 2 cut(s) 402, 906
MslI CAYNNNNRTG 1 cut(s) 177
MspI CCGG 1 cut(s) 771
Mva1269I GAATGC 1 cut(s) 121
MwoI GCNNNNNNNGC 3 cut(s) 422, 899, 908
NdeI CATATG 1 cut(s) 360
NdeII GATC 5 cut(s) 19, 106, 148, 463, 565
NlaIII CATG 6 cut(s) 165, 293, 499, 514, 841, 963
NmuCI GTSAC 3 cut(s) 52, 647, 738
NsbI TGCGCA 2 cut(s) 509, 938
NsiI ATGCAT 1 cut(s) 291
NspI RCATGY 1 cut(s) 514
OliI CACNNNNGTG 1 cut(s) 177
PagI TCATGA 1 cut(s) 837
PciSI GCTCTTC 1 cut(s) 435
PctI GAATGC 1 cut(s) 121
PdmI GAANNNNTTC 2 cut(s) 323, 755
PfeI GAWTC 3 cut(s) 130, 627, 668
PinAI ACCGGT 1 cut(s) 770
PkrI GCNGC 5 cut(s) 415, 427, 485, 817, 895
PleI GAGTC 1 cut(s) 107
PpsI GAGTC 1 cut(s) 107
PshBI ATTAAT 1 cut(s) 906
PstI CTGCAG 2 cut(s) 427, 898
PsuI RGATCY 1 cut(s) 463
RsaI GTAC 1 cut(s) 300
RsaNI GTAC 1 cut(s) 299
RseI CAYNNNNRTG 1 cut(s) 177
SapI GCTCTTC 1 cut(s) 435
SaqAI TTAA 2 cut(s) 402, 906
SatI GCNGC 5 cut(s) 414, 426, 484, 816, 894
Sau3AI GATC 5 cut(s) 19, 106, 148, 463, 565
SchI GAGTC 1 cut(s) 108
SfaNI GCATC 2 cut(s) 276, 722
SfcI CTRYAG 2 cut(s) 423, 894
SmiMI CAYNNNNRTG 1 cut(s) 177
SmlI CTYRAG 2 cut(s) 266, 331
SmoI CTYRAG 2 cut(s) 266, 331
Sse9I AATT 7 cut(s) 36, 142, 394, 449, 560, 656, 755
SsiI CCGC 1 cut(s) 864
SspMI CTAG 4 cut(s) 186, 296, 645, 672
StyI CCWWGG 2 cut(s) 94, 175
TaaI ACNGT 1 cut(s) 44
TaiI ACGT 1 cut(s) 691
TaqI TCGA 3 cut(s) 446, 578, 803
TasI AATT 7 cut(s) 36, 142, 394, 449, 560, 656, 755
TatI WGTACW 1 cut(s) 298
TfiI GAWTC 3 cut(s) 130, 627, 668
Tru1I TTAA 2 cut(s) 402, 906
Tru9I TTAA 2 cut(s) 402, 906
TscAI CASTG 1 cut(s) 723
TseFI GTSAC 3 cut(s) 52, 647, 738
TseI GCWGC 5 cut(s) 413, 425, 483, 815, 893
Tsp45I GTSAC 3 cut(s) 52, 647, 738
TspDTI ATGAA 4 cut(s) 17, 150, 155, 347
TspGWI ACGGA 1 cut(s) 228
TspRI CASTG 1 cut(s) 723
VspI ATTAAT 1 cut(s) 906
XagI CCTNNNNNAGG 1 cut(s) 299
XapI RAATTY 4 cut(s) 142, 394, 449, 755
XceI RCATGY 1 cut(s) 514
XmnI GAANNNNTTC 2 cut(s) 323, 755
XspI CTAG 4 cut(s) 186, 296, 645, 672
Zsp2I ATGCAT 1 cut(s) 291
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.