pycom05g22150

Mitochondrial translocator assembly and maintenance protein 41 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0003914
Physical Location & Seq
Reverse (-)
24624812 .. 24626180
1369 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g22150.1

Sequence Viewer

Length: 513 bp
ATGCAGGAAGATCTGTATGCCAAAATATGTAGCCTCTCGTATATGGGTGATGTGCGTATGCTTTTTGCAGAGGACAGAAATAAGGTGAAGAAAATAGTACAAGGGCAATTTGAATTGTTCCAGTCGATGTATAAGCCATTCATAGAAGATTATGAGACCAAAGAGTTGTTGAGACGGTCATTATCTGGGAATCCTCAACCATATATATCTCAGGATTGTAGTTTATCAGCCGCCCGATCTCTTGTTTCTTATCTGCCCCCGATGGTCAGAAGCCAAATGGGGATGAAGCTAGGAGAGAAGAAAGCACTGTGCGGCTCTGGTCGAGCTGTTCACGATATTGTGATTGGATCCAAAGACGAGGCTGCTAAATGCATGCAGAGTATTTTGAGGCGAAAGGTCATGGTTTCAAGTGCAAGACAGGCAGTCGCTGGTCTCTTAGCTGTTGGTGGCATTAATGGCATGAGATATCTTGGTGCTAAAATGAGCAAGGCATGGAAATCCTGGAGATCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Mmp37

Protein Analysis

171

Amino Acids

19.03

Weight (kDa)

9.72

Isoelectric Point (pI)

57.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Tam41_Mmp37 PF09139 2 - 163 9.6e-38 Phosphatidate cytidylyltransferase, mitochondrial
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 231, 312
AclWI GGATC 2 cut(s) 342, 355
AfaI GTAC 1 cut(s) 99
AgsI TTSAA 2 cut(s) 113, 408
AhdI GACNNNNNGTC 1 cut(s) 422
AjnI CCWGG 1 cut(s) 500
AluBI AGCT 3 cut(s) 289, 326, 440
AluI AGCT 3 cut(s) 289, 326, 440
Alw26I GTCTC 3 cut(s) 149, 166, 437
AlwI GGATC 2 cut(s) 342, 355
AlwNI CAGNNNCTG 1 cut(s) 428
ApeKI GCWGC 1 cut(s) 362
AseI ATTAAT 1 cut(s) 453
AsuHPI GGTGA 2 cut(s) 59, 97
BamHI GGATCC 1 cut(s) 347
BbvI GCAGC 1 cut(s) 349
BccI CCATC 1 cut(s) 256
BciT130I CCWGG 1 cut(s) 502
BcoDI GTCTC 3 cut(s) 149, 166, 437
BfaI CTAG 1 cut(s) 290
BglII AGATCT 1 cut(s) 10
BisI GCNGC 3 cut(s) 231, 313, 363
BlsI GCNGC 3 cut(s) 232, 314, 364
Bme1390I CCNGG 1 cut(s) 502
BmeRI GACNNNNNGTC 1 cut(s) 422
BmiI GGNNCC 1 cut(s) 349
BmrFI CCNGG 1 cut(s) 502
BsaI GGTCTC 2 cut(s) 149, 437
Bse1I ACTGG 1 cut(s) 121
BseBI CCWGG 1 cut(s) 502
BseGI GGATG 1 cut(s) 288
BseMII CTCAG 1 cut(s) 224
BseNI ACTGG 1 cut(s) 121
BseXI GCAGC 1 cut(s) 349
BsmAI GTCTC 3 cut(s) 149, 166, 437
BsmBI CGTCTC 1 cut(s) 166
Bso31I GGTCTC 2 cut(s) 149, 437
Bsp143I GATC 4 cut(s) 10, 236, 347, 506
BspACI CCGC 2 cut(s) 231, 312
BspCNI CTCAG 1 cut(s) 223
BspLI GGNNCC 1 cut(s) 349
BspPI GGATC 2 cut(s) 342, 355
BspTNI GGTCTC 2 cut(s) 149, 437
BsrI ACTGG 1 cut(s) 121
BssMI GATC 4 cut(s) 10, 236, 347, 506
Bst2UI CCWGG 1 cut(s) 502
Bst4CI ACNGT 2 cut(s) 177, 309
BstC8I GCNNGC 1 cut(s) 374
BstDEI CTNAG 2 cut(s) 210, 436
BstF5I GGATG 1 cut(s) 288
BstKTI GATC 4 cut(s) 13, 239, 350, 509
BstMAI GTCTC 3 cut(s) 149, 166, 437
BstMBI GATC 4 cut(s) 10, 236, 347, 506
BstMWI GCNNNNNNNGC 2 cut(s) 419, 456
BstNI CCWGG 1 cut(s) 502
BstNSI RCATGY 1 cut(s) 376
BstSCI CCNGG 1 cut(s) 500
BstV1I GCAGC 1 cut(s) 349
BstX2I RGATCY 2 cut(s) 10, 347
BstYI RGATCY 2 cut(s) 10, 347
BtsCI GGATG 1 cut(s) 288
BtsIMutI CAGTG 1 cut(s) 305
Cac8I GCNNGC 1 cut(s) 374
CaiI CAGNNNCTG 1 cut(s) 428
Csp6I GTAC 1 cut(s) 98
CviAII CATG 4 cut(s) 373, 400, 460, 492
CviJI RGCY 9 cut(s) 33, 136, 230, 273, 289, 315, 326, 362, 440
CviKI_1 RGCY 9 cut(s) 33, 136, 230, 273, 289, 315, 326, 362, 440
CviQI GTAC 1 cut(s) 98
DdeI CTNAG 2 cut(s) 210, 436
DpnI GATC 4 cut(s) 12, 238, 349, 508
DpnII GATC 4 cut(s) 10, 236, 347, 506
DriI GACNNNNNGTC 1 cut(s) 422
Eam1105I GACNNNNNGTC 1 cut(s) 422
Eco31I GGTCTC 2 cut(s) 149, 437
Eco32I GATATC 1 cut(s) 467
EcoRII CCWGG 1 cut(s) 500
EcoRV GATATC 1 cut(s) 467
EcoT22I ATGCAT 1 cut(s) 374
Esp3I CGTCTC 1 cut(s) 166
FaeI CATG 4 cut(s) 376, 403, 463, 495
FatI CATG 4 cut(s) 372, 399, 459, 491
Fnu4HI GCNGC 3 cut(s) 231, 313, 363
FokI GGATG 1 cut(s) 295
Fsp4HI GCNGC 3 cut(s) 231, 313, 363
FspBI CTAG 1 cut(s) 290
GluI GCNGC 3 cut(s) 231, 313, 363
Hin1II CATG 4 cut(s) 376, 403, 463, 495
HinfI GANTC 1 cut(s) 190
HphI GGTGA 2 cut(s) 59, 97
Hpy166II GTNNAC 1 cut(s) 331
Hpy188I TCNGA 1 cut(s) 269
Hpy188III TCNNGA 2 cut(s) 212, 332
Hpy8I GTNNAC 1 cut(s) 331
HpyCH4III ACNGT 2 cut(s) 177, 309
HpyCH4V TGCA 5 cut(s) 4, 68, 372, 376, 413
HpyF10VI GCNNNNNNNGC 2 cut(s) 419, 456
HpyF3I CTNAG 2 cut(s) 210, 436
Hsp92II CATG 4 cut(s) 376, 403, 463, 495
Kzo9I GATC 4 cut(s) 10, 236, 347, 506
LpnPI CCDG 7 cut(s) 134, 171, 197, 303, 404, 414, 487
Lsp1109I GCAGC 1 cut(s) 349
MaeI CTAG 1 cut(s) 290
MalI GATC 4 cut(s) 12, 238, 349, 508
MboI GATC 4 cut(s) 10, 236, 347, 506
MboII GAAGA 4 cut(s) 20, 100, 158, 310
MflI RGATCY 2 cut(s) 10, 347
MluCI AATT 2 cut(s) 107, 113
MnlI CCTC 5 cut(s) 44, 64, 204, 352, 381
Mph1103I ATGCAT 1 cut(s) 374
MseI TTAA 1 cut(s) 453
MspR9I CCNGG 1 cut(s) 502
MvaI CCWGG 1 cut(s) 502
MwoI GCNNNNNNNGC 2 cut(s) 419, 456
NdeII GATC 4 cut(s) 10, 236, 347, 506
NlaIII CATG 4 cut(s) 376, 403, 463, 495
NlaIV GGNNCC 1 cut(s) 349
NsiI ATGCAT 1 cut(s) 374
NspI RCATGY 1 cut(s) 376
PaeI GCATGC 1 cut(s) 376
PfeI GAWTC 1 cut(s) 190
PfoI TCCNGGA 1 cut(s) 500
PkrI GCNGC 3 cut(s) 232, 314, 364
PshBI ATTAAT 1 cut(s) 453
Psp6I CCWGG 1 cut(s) 500
PspGI CCWGG 1 cut(s) 500
PspN4I GGNNCC 1 cut(s) 349
PstNI CAGNNNCTG 1 cut(s) 428
PsuI RGATCY 2 cut(s) 10, 347
RsaI GTAC 1 cut(s) 99
RsaNI GTAC 1 cut(s) 98
SaqAI TTAA 1 cut(s) 453
SatI GCNGC 3 cut(s) 231, 313, 363
Sau3AI GATC 4 cut(s) 10, 236, 347, 506
ScrFI CCNGG 1 cut(s) 502
SetI ASST 5 cut(s) 87, 291, 328, 399, 442
SphI GCATGC 1 cut(s) 376
Sse9I AATT 2 cut(s) 107, 113
SsiI CCGC 2 cut(s) 231, 312
SspMI CTAG 1 cut(s) 290
StyD4I CCNGG 1 cut(s) 500
TaaI ACNGT 2 cut(s) 177, 309
TaqI TCGA 2 cut(s) 125, 322
TasI AATT 2 cut(s) 107, 113
TatI WGTACW 1 cut(s) 97
TauI GCSGC 2 cut(s) 233, 315
TfiI GAWTC 1 cut(s) 190
Tru1I TTAA 1 cut(s) 453
Tru9I TTAA 1 cut(s) 453
TscAI CASTG 1 cut(s) 312
TseI GCWGC 1 cut(s) 362
TspDTI ATGAA 2 cut(s) 130, 299
TspRI CASTG 1 cut(s) 312
VspI ATTAAT 1 cut(s) 453
XceI RCATGY 1 cut(s) 376
XspI CTAG 1 cut(s) 290
Zsp2I ATGCAT 1 cut(s) 374
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.