Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0003914

Physical Location & Seq

Genomic Coordinates Forward (+)

6410207 .. 6413841

Gene Structure 3635 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G118500.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

ATGGAAAACCACGACAAAGCCCAGCTTCAAAGTTTTCTCAAAACTCTTCCCCCTGTTGAGTTCTGCTGTGTCTATGGCTCATCTCTCCACCCCAACAATCCTGGCAGTGCAAAGTCAACCATGGTAGATTGCATTCTTGGTGTATCAAATCCCCAACAATGGCATTCCGAGAATCTGACATTGAACAACGATCATTATGCCGCGTGGATGGTGCTTCTTGGTGGGGCAAGACTGATTACTGACGTTGCAGATGAAATTGGTGTAGGAGTGCACTTCAATCCTTTTGTTAGCTGGGACGACAAGATGTTCAAGTATGGGGTTGTTCGCATGCACGACTTGGTTCAGGACATACTAAATTGGGAGAGGTTCTATTTGAGTGGCCGATTACAAAAACCAGTTCATGTACTTTTGGATAATCTGGATGTCACAAATGTAAACTCGGTTAATTTGAGGGCTGCAATGTCTGCAGCTCTCCTTCTTTTGCCATCCAAGTTCACTGAGGAAGAACTGTATGCCAAAATATGTAGCCTCTCGTATATGGGCGACTTGCGTATGCTTTTTGCAGAGGACAGAAATAAGGTGAAGAAAATAGTACAAGGGCAATTTGAATTGTTCCGTTCGATGTATAAGCCATTTATTGAAGAGTATGAGACCAAAGAGTTGTTGAGACGCTCAATATCTGGGAATACTCAACCAATCATATCTCAGGATGGCGGTTTATCAGCAGCTCAATCTCTCGTTTCTTCTCTGCCCCCAATGGTCAGAAGCCAAATGGCGATGAAGCTAGGAGAAAAGAAAGTACTGTGTGACTCTGGTCGAGTTATTCAGGAAATTGTGATTGGCTCCAAAGACGAGGCTGCTAAATGCATGCAGACTATTCTGCAGCGAAAGGTCATGGTTTCAAGTGCAAGACAGGCCGTGTCTGGTCTCCTGGCTGCTGGTGGCATTACTGCCATGAGATATGTTGGTGCTAAAATGAGCAAGGCTTGGAAATCCTGGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mmp37

Protein Analysis

335

Amino Acids

37.37

Weight (kDa)

8.78

Isoelectric Point (pI)

51.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003914)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47630 AT3G47630 AT3G47630 AT3G47630 AT3G47630 AT3G47630
fragaria_vesca	FvH4_3g13050
malus_domestica	MD05G1245400.v1.1
prunus_persica	Prupe.4G118500_v2.0.a1 Prupe.4G118500_v2.0.a1 Prupe.4G118500_v2.0.a1 Prupe.4G118500_v2.0.a1 Prupe.7G025500_v2.0.a1 Prupe.7G025500_v2.0.a1 Prupe.7G025500_v2.0.a1 Prupe.7G025500_v2.0.a1 Prupe.7G025500_v2.0.a1 Prupe.7G025500_v2.0.a1 Prupe.7G025500_v2.0.a1 Prupe.7G025500_v2.0.a1 Prupe.7G025500_v2.0.a1 Prupe.7G025500_v2.0.a1
pyrus_communis	pycom05g22150
rosa_chinensis	RchiOBHm_Chr5g0021241
rosa_laevigata	RLG00000032598
rosa_multiflora	Rmu_co8341691.1_g000001
rosa_roxburghii	Rroxscaffold_1G00057260
rosa_rugosa	Rorug05G0065400 Rorug05G0065500
rosa_samantha	Rh5AG154500 Rh5BG154100 Rh5CG167700 Rh5DG154600
rosa_wichuraiana	Rw5G013770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	203
AciI	CCGC	2 cut(s)	201, 714
AcoI	YGGCCR	1 cut(s)	379
AfaI	GTAC	3 cut(s)	405, 594, 801
AfiI	CCNNNNNNNGG	1 cut(s)	159
AgsI	TTSAA	7 cut(s)	29, 184, 277, 310, 608, 641, 903
AjnI	CCWGG	3 cut(s)	100, 930, 995
AjuI	GAANNNNNNNTTGG	2 cut(s)	822, 854
AluBI	AGCT	5 cut(s)	25, 291, 470, 728, 784
AluI	AGCT	5 cut(s)	25, 291, 470, 728, 784
Alw21I	GWGCWC	1 cut(s)	273
Alw26I	GTCTC	3 cut(s)	644, 661, 932
Alw44I	GTGCAC	1 cut(s)	269
AoxI	GGCC	2 cut(s)	379, 915
ApaLI	GTGCAC	1 cut(s)	269
ApeKI	GCWGC	6 cut(s)	455, 467, 725, 857, 883, 935
AsuHPI	GGTGA	1 cut(s)	592
BaeGI	GKGCMC	1 cut(s)	273
Bbv12I	GWGCWC	1 cut(s)	273
BbvI	GCAGC	6 cut(s)	442, 479, 737, 844, 895, 922
BccI	CCATC	3 cut(s)	202, 493, 704
BceAI	ACGGC	1 cut(s)	902
BcgI	CGANNNNNNTGC	2 cut(s)	179, 213
BciT130I	CCWGG	3 cut(s)	102, 932, 997
BcoDI	GTCTC	3 cut(s)	644, 661, 932
BfaI	CTAG	1 cut(s)	785
BfmI	CTRYAG	2 cut(s)	465, 881
BisI	GCNGC	7 cut(s)	201, 456, 468, 726, 858, 884, 936
BlsI	GCNGC	7 cut(s)	202, 457, 469, 727, 859, 885, 937
BmcAI	AGTACT	1 cut(s)	801
Bme1390I	CCNGG	3 cut(s)	102, 932, 997
BmiI	GGNNCC	1 cut(s)	844
BmrFI	CCNGG	3 cut(s)	102, 932, 997
BoxI	GACNNNNGTC	1 cut(s)	813
BsaI	GGTCTC	2 cut(s)	644, 932
BsaJI	CCNNGG	1 cut(s)	120
Bsc4I	CCNNNNNNNGG	1 cut(s)	159
Bse1I	ACTGG	1 cut(s)	395
Bse3DI	GCAATG	1 cut(s)	465
BseBI	CCWGG	3 cut(s)	102, 932, 997
BseDI	CCNNGG	1 cut(s)	120
BseGI	GGATG	4 cut(s)	213, 427, 485, 715
BseLI	CCNNNNNNNGG	1 cut(s)	159
BseMI	GCAATG	1 cut(s)	465
BseMII	CTCAG	2 cut(s)	489, 719
BseNI	ACTGG	1 cut(s)	395
BseSI	GKGCMC	1 cut(s)	273
BseXI	GCAGC	6 cut(s)	442, 479, 737, 844, 895, 922
BseYI	CCCAGC	2 cut(s)	21, 291
Bsh1236I	CGCG	1 cut(s)	203
BshFI	GGCC	2 cut(s)	381, 917
BsiHKAI	GWGCWC	1 cut(s)	273
BslFI	GGGAC	1 cut(s)	308
BslI	CCNNNNNNNGG	1 cut(s)	159
BsmAI	GTCTC	3 cut(s)	644, 661, 932
BsmBI	CGTCTC	1 cut(s)	661
BsmFI	GGGAC	1 cut(s)	308
BsmI	GAATGC	2 cut(s)	132, 163
BsnI	GGCC	2 cut(s)	381, 917
Bso31I	GGTCTC	2 cut(s)	644, 932
Bsp1286I	GDGCHC	1 cut(s)	273
Bsp143I	GATC	1 cut(s)	190
Bsp19I	CCATGG	1 cut(s)	120
BspACI	CCGC	2 cut(s)	201, 714
BspANI	GGCC	2 cut(s)	381, 917
BspCNI	CTCAG	2 cut(s)	490, 718
BspFNI	CGCG	1 cut(s)	203
BspLI	GGNNCC	1 cut(s)	844
BspMAI	CTGCAG	2 cut(s)	469, 885
BspTNI	GGTCTC	2 cut(s)	644, 932
BsrDI	GCAATG	1 cut(s)	465
BsrI	ACTGG	1 cut(s)	395
BssECI	CCNNGG	1 cut(s)	120
BssMI	GATC	1 cut(s)	190
BssT1I	CCWWGG	1 cut(s)	120
Bst2UI	CCWGG	3 cut(s)	102, 932, 997
Bst4CI	ACNGT	2 cut(s)	510, 804
Bst6I	CTCTTC	2 cut(s)	51, 636
BstAPI	GCANNNNNTGC	1 cut(s)	464
BstC8I	GCNNGC	2 cut(s)	329, 869
BstDEI	CTNAG	2 cut(s)	498, 705
BstDSI	CCRYGG	1 cut(s)	120
BstF5I	GGATG	4 cut(s)	213, 427, 485, 715
BstFNI	CGCG	1 cut(s)	203
BstKTI	GATC	1 cut(s)	193
BstMAI	GTCTC	3 cut(s)	644, 661, 932
BstMBI	GATC	1 cut(s)	190
BstMWI	GCNNNNNNNGC	2 cut(s)	464, 914
BstNI	CCWGG	3 cut(s)	102, 932, 997
BstNSI	RCATGY	2 cut(s)	331, 871
BstPAI	GACNNNNGTC	1 cut(s)	813
BstSCI	CCNGG	3 cut(s)	100, 930, 995
BstSFI	CTRYAG	2 cut(s)	465, 881
BstSLI	GKGCMC	1 cut(s)	273
BstUI	CGCG	1 cut(s)	203
BstV1I	GCAGC	6 cut(s)	442, 479, 737, 844, 895, 922
BsuRI	GGCC	2 cut(s)	381, 917
BtgI	CCRYGG	1 cut(s)	120
BtgZI	GCGATG	1 cut(s)	791
BtsCI	GGATG	4 cut(s)	213, 427, 485, 715
BtsI	GCAGTG	1 cut(s)	112
BtsIMutI	CAGTG	2 cut(s)	112, 495
Cac8I	GCNNGC	2 cut(s)	329, 869
CseI	GACGC	1 cut(s)	678
Csp6I	GTAC	3 cut(s)	404, 593, 800
CviAII	CATG	6 cut(s)	121, 328, 401, 868, 895, 955
CviQI	GTAC	3 cut(s)	404, 593, 800
DdeI	CTNAG	2 cut(s)	498, 705
DpnI	GATC	1 cut(s)	192
DpnII	GATC	1 cut(s)	190
EaeI	YGGCCR	1 cut(s)	379
Eam1104I	CTCTTC	2 cut(s)	51, 636
EarI	CTCTTC	2 cut(s)	51, 636
Eco130I	CCWWGG	1 cut(s)	120
Eco31I	GGTCTC	2 cut(s)	644, 932
EcoRII	CCWGG	3 cut(s)	100, 930, 995
EcoT14I	CCWWGG	1 cut(s)	120
EcoT22I	ATGCAT	1 cut(s)	869
ErhI	CCWWGG	1 cut(s)	120
Esp3I	CGTCTC	1 cut(s)	661
FaeI	CATG	6 cut(s)	124, 331, 404, 871, 898, 958
FalI	AAGNNNNNCTT	2 cut(s)	9, 41
FaqI	GGGAC	1 cut(s)	308
FatI	CATG	6 cut(s)	120, 327, 400, 867, 894, 954
Fnu4HI	GCNGC	7 cut(s)	201, 456, 468, 726, 858, 884, 936
FokI	GGATG	4 cut(s)	220, 434, 472, 722
Fsp4HI	GCNGC	7 cut(s)	201, 456, 468, 726, 858, 884, 936
FspBI	CTAG	1 cut(s)	785
GluI	GCNGC	7 cut(s)	201, 456, 468, 726, 858, 884, 936
GsaI	CCCAGC	2 cut(s)	25, 295
HaeIII	GGCC	2 cut(s)	381, 917
HgaI	GACGC	1 cut(s)	678
Hin1II	CATG	6 cut(s)	124, 331, 404, 871, 898, 958
HincII	GTYRAC	1 cut(s)	117
HindII	GTYRAC	1 cut(s)	117
HinfI	GANTC	2 cut(s)	172, 809
HphI	GGTGA	1 cut(s)	592
Hpy166II	GTNNAC	4 cut(s)	117, 271, 436, 495
Hpy188I	TCNGA	3 cut(s)	169, 177, 764
Hpy188III	TCNNGA	4 cut(s)	344, 419, 707, 827
Hpy8I	GTNNAC	4 cut(s)	117, 271, 436, 495
HpyAV	CCTTC	1 cut(s)	485
HpyCH4III	ACNGT	2 cut(s)	510, 804
HpyCH4IV	ACGT	1 cut(s)	243
HpyF10VI	GCNNNNNNNGC	2 cut(s)	464, 914
HpyF3I	CTNAG	2 cut(s)	498, 705
HpySE526I	ACGT	1 cut(s)	243
Hsp92II	CATG	6 cut(s)	124, 331, 404, 871, 898, 958
Kzo9I	GATC	1 cut(s)	190
LmnI	GCTCC	1 cut(s)	848
Lsp1109I	GCAGC	6 cut(s)	442, 479, 737, 844, 895, 922
MaeI	CTAG	1 cut(s)	785
MaeII	ACGT	1 cut(s)	243
MaeIII	GTNAC	2 cut(s)	424, 806
MalI	GATC	1 cut(s)	192
MboI	GATC	1 cut(s)	190
MboII	GAAGA	5 cut(s)	38, 515, 595, 653, 735
MhlI	GDGCHC	1 cut(s)	273
MluCI	AATT	6 cut(s)	255, 355, 445, 602, 608, 831
MlyI	GAGTC	1 cut(s)	803
MnlI	CCTC	6 cut(s)	357, 444, 493, 539, 559, 847
Mph1103I	ATGCAT	1 cut(s)	869
MseI	TTAA	1 cut(s)	444
MspR9I	CCNGG	3 cut(s)	102, 932, 997
Mva1269I	GAATGC	2 cut(s)	132, 163
MvaI	CCWGG	3 cut(s)	102, 932, 997
MvnI	CGCG	1 cut(s)	203
MwoI	GCNNNNNNNGC	2 cut(s)	464, 914
NcoI	CCATGG	1 cut(s)	120
NdeII	GATC	1 cut(s)	190
NlaIII	CATG	6 cut(s)	124, 331, 404, 871, 898, 958
NlaIV	GGNNCC	1 cut(s)	844
NmuCI	GTSAC	2 cut(s)	424, 806
NsiI	ATGCAT	1 cut(s)	869
NspI	RCATGY	2 cut(s)	331, 871
PaeI	GCATGC	2 cut(s)	331, 871
PctI	GAATGC	2 cut(s)	132, 163
PfeI	GAWTC	1 cut(s)	172
PfoI	TCCNGGA	1 cut(s)	995
PkrI	GCNGC	7 cut(s)	202, 457, 469, 727, 859, 885, 937
PleI	GAGTC	1 cut(s)	803
PpsI	GAGTC	1 cut(s)	803
PshAI	GACNNNNGTC	1 cut(s)	813
Psp6I	CCWGG	3 cut(s)	100, 930, 995
PspFI	CCCAGC	2 cut(s)	21, 291
PspGI	CCWGG	3 cut(s)	100, 930, 995
PspN4I	GGNNCC	1 cut(s)	844
PstI	CTGCAG	2 cut(s)	469, 885
RsaI	GTAC	3 cut(s)	405, 594, 801
RsaNI	GTAC	3 cut(s)	404, 593, 800
SaqAI	TTAA	1 cut(s)	444
SatI	GCNGC	7 cut(s)	201, 456, 468, 726, 858, 884, 936
Sau3AI	GATC	1 cut(s)	190
ScaI	AGTACT	1 cut(s)	801
SchI	GAGTC	1 cut(s)	803
ScrFI	CCNGG	3 cut(s)	102, 932, 997
SduI	GDGCHC	1 cut(s)	273
SetI	ASST	9 cut(s)	27, 246, 293, 368, 472, 582, 730, 786, 894
SfcI	CTRYAG	2 cut(s)	465, 881
SphI	GCATGC	2 cut(s)	331, 871
Sse9I	AATT	6 cut(s)	255, 355, 445, 602, 608, 831
SsiI	CCGC	2 cut(s)	201, 714
SspMI	CTAG	1 cut(s)	785
StyD4I	CCNGG	3 cut(s)	100, 930, 995
StyI	CCWWGG	1 cut(s)	120
TaaI	ACNGT	2 cut(s)	510, 804
TaiI	ACGT	1 cut(s)	246
TaqI	TCGA	2 cut(s)	620, 817
TasI	AATT	6 cut(s)	255, 355, 445, 602, 608, 831
TatI	WGTACW	3 cut(s)	403, 592, 799
TauI	GCSGC	1 cut(s)	203
TfiI	GAWTC	1 cut(s)	172
Tru1I	TTAA	1 cut(s)	444
Tru9I	TTAA	1 cut(s)	444
TscAI	CASTG	2 cut(s)	112, 502
TseFI	GTSAC	2 cut(s)	424, 806
TseI	GCWGC	6 cut(s)	455, 467, 725, 857, 883, 935
Tsp45I	GTSAC	2 cut(s)	424, 806
TspDTI	ATGAA	3 cut(s)	267, 389, 794
TspGWI	ACGGA	1 cut(s)	605
TspRI	CASTG	2 cut(s)	112, 502
VneI	GTGCAC	1 cut(s)	269
XceI	RCATGY	2 cut(s)	331, 871
XspI	CTAG	1 cut(s)	785
ZrmI	AGTACT	1 cut(s)	801
Zsp2I	ATGCAT	1 cut(s)	869

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.