Rroxscaffold_1G00057260

Mitochondrial translocator assembly and maintenance protein 41 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0003914
Physical Location & Seq
Reverse (-)
79228800 .. 79232298
3499 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00057260.1

Sequence Viewer

Length: 1062 bp
ATGGAGAATCACAACAAAACCCAGCTTCAAAGTTTCCTCAAACATCTTCCTCCTGTTGAGTTCTGCTGTGTTTATGGGTCATCACTCCACCCAGATCGTGACAATGCCAAGTCAACAATGGTGGATTGCATTCTTGGAGTATCAGATCCCCTACAATGGCATTCTGAGAATCTGAAATTGAACAAGGATCACTATGCCTCTTGGATGGCGCTGCTTGGTGGGGCCGGACTGGTTACTAATGTTGCAGATTACATAGGTGTGGGAGTGCACTTCAATCCTTTTGTTAGTTGGAACGACAAGATGTTCAAGTATGGGGTTGTCTGCATGCATGACTTGGTGCAGGACATATCAAATTGGGAGAGGTTCTACTTGAGTGGCCGGTTACAAAAGCCGGTTCTAGCAGCACCCATAGCACTGCATGATGATGATAGAGTATTGGACCTTGATGAAGTTGTTCAAATAATTTCTGATAATTTGAATGTTGCAAATGTAAACTCGGTTAATTTGAGGGCTGCAATAGCTGCTGCTCTCCTTCTTTTGCCATCCAAGTTCACTGAGGAGGATCTGTATGCCAAAATATGTAGCCTCTCATATATGGGTGACTTGCGTATGCTCTTTGCAGAAGACAGAAATAAGGTGAAGAAAATAGTACAAGGGCAATTTGAGTTGTTTCGGTCAATGTATAAGCCATTTATTCAAGAGTATGAGACTAATGAGTTGTTGAGATACTCATTGTCTGGAAATCCTCAACCAGTCGTTTCTCAGGATTGTGATTTATCAGCAGCTCGATCCCTTGTTTCTTCTCTGCCCCCACTGGTCAGAAGCCAAATGGGAGTGAAGCTTGGAGAGAAGAAAAGGCTGTGCGACTCTGGTCGAGTTATTAACGAAGTTGTGATTGGCTCAAGACAAGAGGCTGCTCAATGCATGCAGACAATTTTGAAGCGAAAGGTAATGGTTTCAAGTGCAAGACAGGCTGTCTCTGGTCTGCTGGCTGTTGGTGGTGTTAATGGCATGAGATATCTTGGTGCTAAAATGCGCAAGGCTTGGAATTCGTGGAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Mmp37

Protein Analysis

353

Amino Acids

39.57

Weight (kDa)

8.53

Isoelectric Point (pI)

46.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Tam41_Mmp37 PF09139 9 - 347 1.5e-95 Phosphatidate cytidylyltransferase, mitochondrial
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1037
AclWI GGATC 4 cut(s) 140, 195, 570, 783
AcoI YGGCCR 1 cut(s) 376
AcsI RAATTY 1 cut(s) 1048
AfaI GTAC 1 cut(s) 651
AfiI CCNNNNNNNGG 1 cut(s) 156
AgsI TTSAA 9 cut(s) 29, 181, 274, 307, 458, 478, 698, 940, 960
AhdI GACNNNNNGTC 1 cut(s) 974
AjuI GAANNNNNNNTTGG 2 cut(s) 879, 911
AluBI AGCT 4 cut(s) 25, 521, 785, 841
AluI AGCT 4 cut(s) 25, 521, 785, 841
Alw21I GWGCWC 1 cut(s) 270
Alw26I GTCTC 2 cut(s) 701, 982
Alw44I GTGCAC 1 cut(s) 266
AlwI GGATC 4 cut(s) 140, 195, 570, 783
AoxI GGCC 2 cut(s) 222, 376
ApaLI GTGCAC 1 cut(s) 266
ApeKI GCWGC 7 cut(s) 211, 401, 512, 521, 524, 782, 914
ApoI RAATTY 1 cut(s) 1048
Asp700I GAANNNNTTC 1 cut(s) 453
AspLEI GCGC 2 cut(s) 211, 1038
AspS9I GGNCC 2 cut(s) 222, 439
AsuHPI GGTGA 2 cut(s) 611, 649
AvaII GGWCC 1 cut(s) 439
BaeGI GKGCMC 1 cut(s) 270
BbsI GAAGAC 1 cut(s) 630
Bbv12I GWGCWC 1 cut(s) 270
BbvI GCAGC 7 cut(s) 198, 413, 499, 508, 511, 794, 901
BccI CCATC 2 cut(s) 199, 550
BcoDI GTCTC 2 cut(s) 701, 982
BfaI CTAG 1 cut(s) 398
BfoI RGCGCY 1 cut(s) 212
BisI GCNGC 7 cut(s) 212, 402, 513, 522, 525, 783, 915
BlsI GCNGC 7 cut(s) 213, 403, 514, 523, 526, 784, 916
Bme18I GGWCC 1 cut(s) 439
BmeRI GACNNNNNGTC 1 cut(s) 974
BmgT120I GGNCC 2 cut(s) 222, 439
BmiI GGNNCC 1 cut(s) 223
BoxI GACNNNNGTC 1 cut(s) 870
BpiI GAAGAC 1 cut(s) 630
BpuEI CTTGAG 2 cut(s) 391, 886
BsaXI ACNNNNNCTCC 2 cut(s) 551, 581
Bsc4I CCNNNNNNNGG 1 cut(s) 156
Bse118I RCCGGY 2 cut(s) 378, 391
Bse1I ACTGG 3 cut(s) 234, 752, 819
BseGI GGATG 2 cut(s) 210, 542
BseLI CCNNNNNNNGG 1 cut(s) 156
BseMII CTCAG 3 cut(s) 156, 546, 776
BseNI ACTGG 3 cut(s) 234, 752, 819
BseRI GAGGAG 1 cut(s) 572
BseSI GKGCMC 1 cut(s) 270
BseXI GCAGC 7 cut(s) 198, 413, 499, 508, 511, 794, 901
BseYI CCCAGC 1 cut(s) 21
BsgI GTGCAG 1 cut(s) 359
BshFI GGCC 2 cut(s) 224, 378
BsiHKAI GWGCWC 1 cut(s) 270
BsiSI CCGG 3 cut(s) 225, 379, 392
BslI CCNNNNNNNGG 1 cut(s) 156
BsmAI GTCTC 2 cut(s) 701, 982
BsmI GAATGC 2 cut(s) 129, 160
BsnI GGCC 2 cut(s) 224, 378
Bsp1286I GDGCHC 1 cut(s) 270
Bsp143I GATC 5 cut(s) 94, 145, 187, 562, 788
BspANI GGCC 2 cut(s) 224, 378
BspCNI CTCAG 3 cut(s) 157, 547, 775
BspLI GGNNCC 1 cut(s) 223
BspPI GGATC 4 cut(s) 140, 195, 570, 783
BsrFI RCCGGY 2 cut(s) 378, 391
BsrI ACTGG 3 cut(s) 234, 752, 819
BssAI RCCGGY 2 cut(s) 378, 391
BssMI GATC 5 cut(s) 94, 145, 187, 562, 788
BstAPI GCANNNNNTGC 1 cut(s) 521
BstC8I GCNNGC 3 cut(s) 326, 926, 990
BstDEI CTNAG 3 cut(s) 165, 555, 762
BstF5I GGATG 2 cut(s) 210, 542
BstH2I RGCGCY 1 cut(s) 212
BstHHI GCGC 2 cut(s) 211, 1038
BstKTI GATC 5 cut(s) 97, 148, 190, 565, 791
BstMAI GTCTC 2 cut(s) 701, 982
BstMBI GATC 5 cut(s) 94, 145, 187, 562, 788
BstMWI GCNNNNNNNGC 4 cut(s) 410, 518, 521, 971
BstNSI RCATGY 2 cut(s) 328, 928
BstPAI GACNNNNGTC 1 cut(s) 870
BstSLI GKGCMC 1 cut(s) 270
BstV1I GCAGC 7 cut(s) 198, 413, 499, 508, 511, 794, 901
BstV2I GAAGAC 1 cut(s) 630
BstX2I RGATCY 2 cut(s) 145, 562
BstYI RGATCY 2 cut(s) 145, 562
BsuRI GGCC 2 cut(s) 224, 378
BtsCI GGATG 2 cut(s) 210, 542
BtsI GCAGTG 1 cut(s) 413
BtsIMutI CAGTG 3 cut(s) 413, 552, 812
Cac8I GCNNGC 3 cut(s) 326, 926, 990
CfoI GCGC 2 cut(s) 211, 1038
Cfr10I RCCGGY 2 cut(s) 378, 391
Cfr13I GGNCC 2 cut(s) 222, 439
Csp6I GTAC 1 cut(s) 650
CspCI CAANNNNNGTGG 2 cut(s) 102, 137
CviAII CATG 5 cut(s) 325, 329, 419, 925, 1012
CviQI GTAC 1 cut(s) 650
DdeI CTNAG 3 cut(s) 165, 555, 762
DpnI GATC 5 cut(s) 96, 147, 189, 564, 790
DpnII GATC 5 cut(s) 94, 145, 187, 562, 788
DriI GACNNNNNGTC 1 cut(s) 974
EaeI YGGCCR 1 cut(s) 376
Eam1105I GACNNNNNGTC 1 cut(s) 974
Eco32I GATATC 1 cut(s) 1019
Eco47I GGWCC 1 cut(s) 439
EcoRI GAATTC 1 cut(s) 1048
EcoRV GATATC 1 cut(s) 1019
EcoT22I ATGCAT 2 cut(s) 330, 926
FaeI CATG 5 cut(s) 328, 332, 422, 928, 1015
FatI CATG 5 cut(s) 324, 328, 418, 924, 1011
Fnu4HI GCNGC 7 cut(s) 212, 402, 513, 522, 525, 783, 915
FokI GGATG 2 cut(s) 217, 529
Fsp4HI GCNGC 7 cut(s) 212, 402, 513, 522, 525, 783, 915
FspBI CTAG 1 cut(s) 398
FspI TGCGCA 1 cut(s) 1037
GlaI GCGC 2 cut(s) 210, 1037
GluI GCNGC 7 cut(s) 212, 402, 513, 522, 525, 783, 915
GsaI CCCAGC 1 cut(s) 25
HaeII RGCGCY 1 cut(s) 212
HaeIII GGCC 2 cut(s) 224, 378
HapII CCGG 3 cut(s) 225, 379, 392
HhaI GCGC 2 cut(s) 211, 1038
Hin1II CATG 5 cut(s) 328, 332, 422, 928, 1015
Hin6I GCGC 2 cut(s) 209, 1036
HinP1I GCGC 2 cut(s) 209, 1036
HincII GTYRAC 1 cut(s) 114
HindII GTYRAC 1 cut(s) 114
HindIII AAGCTT 1 cut(s) 839
HinfI GANTC 3 cut(s) 7, 169, 866
HpaII CCGG 3 cut(s) 225, 379, 392
HphI GGTGA 2 cut(s) 611, 649
Hpy166II GTNNAC 4 cut(s) 114, 268, 493, 552
Hpy188I TCNGA 5 cut(s) 145, 166, 174, 469, 821
Hpy188III TCNNGA 5 cut(s) 98, 698, 738, 764, 903
Hpy8I GTNNAC 4 cut(s) 114, 268, 493, 552
HpyAV CCTTC 1 cut(s) 542
HpyF10VI GCNNNNNNNGC 4 cut(s) 410, 518, 521, 971
HpyF3I CTNAG 3 cut(s) 165, 555, 762
Hsp92II CATG 5 cut(s) 328, 332, 422, 928, 1015
HspAI GCGC 2 cut(s) 209, 1036
Kzo9I GATC 5 cut(s) 94, 145, 187, 562, 788
Lsp1109I GCAGC 7 cut(s) 198, 413, 499, 508, 511, 794, 901
MaeI CTAG 1 cut(s) 398
MaeIII GTNAC 4 cut(s) 98, 232, 381, 599
MalI GATC 5 cut(s) 96, 147, 189, 564, 790
MboI GATC 5 cut(s) 94, 145, 187, 562, 788
MboII GAAGA 5 cut(s) 38, 635, 652, 792, 862
MflI RGATCY 2 cut(s) 145, 562
MhlI GDGCHC 1 cut(s) 270
MluCI AATT 8 cut(s) 176, 352, 462, 472, 502, 659, 933, 1048
MlyI GAGTC 1 cut(s) 860
MmeI TCCRAC 1 cut(s) 269
Mph1103I ATGCAT 2 cut(s) 330, 926
MroXI GAANNNNTTC 1 cut(s) 453
MseI TTAA 3 cut(s) 501, 882, 1005
MslI CAYNNNNRTG 2 cut(s) 257, 423
MspI CCGG 3 cut(s) 225, 379, 392
Mva1269I GAATGC 2 cut(s) 129, 160
MwoI GCNNNNNNNGC 4 cut(s) 410, 518, 521, 971
NdeII GATC 5 cut(s) 94, 145, 187, 562, 788
NlaIII CATG 5 cut(s) 328, 332, 422, 928, 1015
NlaIV GGNNCC 1 cut(s) 223
NmuCI GTSAC 2 cut(s) 98, 599
NsbI TGCGCA 1 cut(s) 1037
NsiI ATGCAT 2 cut(s) 330, 926
NspI RCATGY 2 cut(s) 328, 928
PaeI GCATGC 2 cut(s) 328, 928
PctI GAATGC 2 cut(s) 129, 160
PdmI GAANNNNTTC 1 cut(s) 453
PfeI GAWTC 2 cut(s) 7, 169
PkrI GCNGC 7 cut(s) 213, 403, 514, 523, 526, 784, 916
PleI GAGTC 1 cut(s) 860
PpsI GAGTC 1 cut(s) 860
PshAI GACNNNNGTC 1 cut(s) 870
PspFI CCCAGC 1 cut(s) 21
PspN4I GGNNCC 1 cut(s) 223
PspPI GGNCC 2 cut(s) 222, 439
PsuI RGATCY 2 cut(s) 145, 562
RsaI GTAC 1 cut(s) 651
RsaNI GTAC 1 cut(s) 650
RseI CAYNNNNRTG 2 cut(s) 257, 423
SaqAI TTAA 3 cut(s) 501, 882, 1005
SatI GCNGC 7 cut(s) 212, 402, 513, 522, 525, 783, 915
Sau3AI GATC 5 cut(s) 94, 145, 187, 562, 788
Sau96I GGNCC 2 cut(s) 222, 439
SchI GAGTC 1 cut(s) 860
SduI GDGCHC 1 cut(s) 270
SetI ASST 9 cut(s) 27, 259, 365, 444, 523, 639, 787, 843, 951
SinI GGWCC 1 cut(s) 439
SmiMI CAYNNNNRTG 2 cut(s) 257, 423
SmlI CTYRAG 2 cut(s) 370, 901
SmoI CTYRAG 2 cut(s) 370, 901
SphI GCATGC 2 cut(s) 328, 928
Sse9I AATT 8 cut(s) 176, 352, 462, 472, 502, 659, 933, 1048
SspMI CTAG 1 cut(s) 398
TaqI TCGA 2 cut(s) 787, 874
TaqII GACCGA 1 cut(s) 663
TasI AATT 8 cut(s) 176, 352, 462, 472, 502, 659, 933, 1048
TatI WGTACW 1 cut(s) 649
TfiI GAWTC 2 cut(s) 7, 169
Tru1I TTAA 3 cut(s) 501, 882, 1005
Tru9I TTAA 3 cut(s) 501, 882, 1005
TscAI CASTG 3 cut(s) 420, 559, 819
TseFI GTSAC 2 cut(s) 98, 599
TseI GCWGC 7 cut(s) 211, 401, 512, 521, 524, 782, 914
Tsp45I GTSAC 2 cut(s) 98, 599
TspDTI ATGAA 1 cut(s) 462
TspRI CASTG 3 cut(s) 420, 559, 819
VneI GTGCAC 1 cut(s) 266
VpaK11BI GGWCC 1 cut(s) 439
XapI RAATTY 1 cut(s) 1048
XceI RCATGY 2 cut(s) 328, 928
XcmI CCANNNNNNNNNTGG 1 cut(s) 115
XmnI GAANNNNTTC 1 cut(s) 453
XspI CTAG 1 cut(s) 398
Zsp2I ATGCAT 2 cut(s) 330, 926
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.