FvH4_3g13050

Mitochondrial translocator assembly and maintenance protein 41 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0003914
Physical Location & Seq
Forward (+)
7803754 .. 7807175
3422 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g13050.t1

Sequence Viewer

Length: 1002 bp
ATGGAGAATCACAGCAAAACCCAGCTTCAGAGTTTCCTCAAACAACTTCCTCCTGTTGAGTTCTGCTGTGTTTATGGATCATCACTGCACCCAAATCGTGATAATGCCAAGTCAACAATGGTGGATTGCATTCTTGGAGTATCAGACCCCCTACAATGGCATTCTGAGAATCTGAAATTGAACAAGGATCACTATGTCTCTTGGATGGCGCTGCTCGGTGGGGCCAAACTGGTTACTAATGTTGCAGATCACATAGGTGTAGGAGTGCACTTCAATCCTTTTGTTAGTTGGAACGACAAGATGCTCAAGTATGGGGTTGTCCGCATGCATGACTTGGTGCAGGACATATCAAATTGGGAGAGGTTCTACTTGAGTGGCCGGTTACAAAAGCCAGTTCAAATAATATCTGATAATTTGGATATTGCAAATCTAAACTCGGTTAATTTGAGGGCTGCAATAGCTGCTGCTCTCCTTCTTTTGCCATCCAAGTTCACTGAGGTGGATCTGTATGCCAAAATATGTAGCCTCTCATATATGGGTGACTTGCGTATGCTCTTTGCAGAAGACAAAAATAAGGTGAAGAAAATAGTACAAGGACAATTTGAATTGTTTCAATTAATGTATAAGCCATTTATTCAGGAGTATGAGTCTAAAGAGTTATTGAGATACTCATTGTCCGGAAATCCTCGACCAGTCCTTTCTCAGGATTCTGATGTATCAGCAGCTCGGTCCCTTGTTTCTTCTCTACCCCCACTAGTCAGAAGTCAAATAGGAGTGAAGCTAGGAGAGAAGAAAAGGCTGTGCGACTCTGGTCGAGTTATTAATGAAGTTGTGATTGGCTCAAGACAAGAGGCTGCTCAATGCATGCAGACAATTCTGAAGCGAAAGGTAATGGTCTCAAGCGCACGACAGGCTGTCTCTGGTCTCCTTGCTGTTGGTGGCGTTCATGGCATGAGATATCTTGGAGCTAAAATGCGCAAGGCTTGGAATTCATGGAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Mmp37

Protein Analysis

334

Amino Acids

37.44

Weight (kDa)

9.45

Isoelectric Point (pI)

44.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Tam41_Mmp37 PF09139 9 - 327 8.5e-103 Phosphatidate cytidylyltransferase, mitochondrial
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 977
AccIII TCCGGA 1 cut(s) 677
AciI CCGC 1 cut(s) 322
AclWI GGATC 3 cut(s) 85, 195, 510
AcoI YGGCCR 1 cut(s) 376
AcsI RAATTY 1 cut(s) 988
AcuI CTGAAG 2 cut(s) 11, 899
AfaI GTAC 1 cut(s) 591
AfiI CCNNNNNNNGG 2 cut(s) 156, 703
AgsI TTSAA 5 cut(s) 181, 274, 398, 605, 614
AhdI GACNNNNNGTC 1 cut(s) 914
AhlI ACTAGT 1 cut(s) 754
AjuI GAANNNNNNNTTGG 2 cut(s) 819, 851
AleI CACNNNNGTG 2 cut(s) 255, 497
AluBI AGCT 5 cut(s) 25, 461, 725, 781, 968
AluI AGCT 5 cut(s) 25, 461, 725, 781, 968
Alw21I GWGCWC 1 cut(s) 270
Alw26I GTCTC 4 cut(s) 202, 901, 922, 929
Alw44I GTGCAC 1 cut(s) 266
AlwI GGATC 3 cut(s) 85, 195, 510
Aor13HI TCCGGA 1 cut(s) 677
AoxI GGCC 2 cut(s) 222, 376
ApaLI GTGCAC 1 cut(s) 266
ApeKI GCWGC 6 cut(s) 211, 452, 461, 464, 722, 854
ApoI RAATTY 1 cut(s) 988
AseI ATTAAT 2 cut(s) 617, 822
Asp700I GAANNNNTTC 1 cut(s) 609
AspLEI GCGC 3 cut(s) 211, 905, 978
AspS9I GGNCC 2 cut(s) 222, 729
AsuHPI GGTGA 2 cut(s) 551, 589
AvaII GGWCC 1 cut(s) 729
BaeGI GKGCMC 1 cut(s) 270
BbsI GAAGAC 1 cut(s) 570
Bbv12I GWGCWC 1 cut(s) 270
BbvI GCAGC 6 cut(s) 198, 439, 448, 451, 734, 841
BccI CCATC 2 cut(s) 199, 490
BcgI CGANNNNNNTGC 2 cut(s) 77, 111
BcoDI GTCTC 4 cut(s) 202, 901, 922, 929
BcuI ACTAGT 1 cut(s) 754
BfaI CTAG 2 cut(s) 755, 782
BfoI RGCGCY 1 cut(s) 212
BisI GCNGC 6 cut(s) 212, 453, 462, 465, 723, 855
BlsI GCNGC 6 cut(s) 213, 454, 463, 466, 724, 856
Bme18I GGWCC 1 cut(s) 729
BmeRI GACNNNNNGTC 1 cut(s) 914
BmgT120I GGNCC 2 cut(s) 222, 729
BmiI GGNNCC 2 cut(s) 223, 731
BmsI GCATC 1 cut(s) 291
BoxI GACNNNNGTC 1 cut(s) 810
BpiI GAAGAC 1 cut(s) 570
BpuEI CTTGAG 4 cut(s) 290, 391, 826, 883
BsaI GGTCTC 2 cut(s) 901, 929
BsaWI WCCGGW 1 cut(s) 677
BsaXI ACNNNNNCTCC 2 cut(s) 632, 662
Bsc4I CCNNNNNNNGG 2 cut(s) 156, 703
Bse118I RCCGGY 1 cut(s) 378
Bse1I ACTGG 3 cut(s) 234, 392, 692
BseAI TCCGGA 1 cut(s) 677
BseGI GGATG 2 cut(s) 210, 482
BseLI CCNNNNNNNGG 2 cut(s) 156, 703
BseMII CTCAG 3 cut(s) 156, 486, 716
BseNI ACTGG 3 cut(s) 234, 392, 692
BseSI GKGCMC 1 cut(s) 270
BseXI GCAGC 6 cut(s) 198, 439, 448, 451, 734, 841
BseYI CCCAGC 1 cut(s) 21
BsgI GTGCAG 2 cut(s) 71, 359
BshFI GGCC 2 cut(s) 224, 378
BsiHKAI GWGCWC 1 cut(s) 270
BsiSI CCGG 2 cut(s) 379, 678
BslFI GGGAC 1 cut(s) 715
BslI CCNNNNNNNGG 2 cut(s) 156, 703
BsmAI GTCTC 4 cut(s) 202, 901, 922, 929
BsmFI GGGAC 1 cut(s) 715
BsmI GAATGC 2 cut(s) 129, 160
BsnI GGCC 2 cut(s) 224, 378
Bso31I GGTCTC 2 cut(s) 901, 929
Bsp1286I GDGCHC 1 cut(s) 270
Bsp13I TCCGGA 1 cut(s) 677
Bsp143I GATC 4 cut(s) 77, 187, 247, 502
BspACI CCGC 1 cut(s) 322
BspANI GGCC 2 cut(s) 224, 378
BspCNI CTCAG 3 cut(s) 157, 487, 715
BspEI TCCGGA 1 cut(s) 677
BspLI GGNNCC 2 cut(s) 223, 731
BspPI GGATC 3 cut(s) 85, 195, 510
BspTNI GGTCTC 2 cut(s) 901, 929
BsrFI RCCGGY 1 cut(s) 378
BsrI ACTGG 3 cut(s) 234, 392, 692
BssAI RCCGGY 1 cut(s) 378
BssMI GATC 4 cut(s) 77, 187, 247, 502
BstAPI GCANNNNNTGC 1 cut(s) 461
BstC8I GCNNGC 2 cut(s) 326, 866
BstDEI CTNAG 3 cut(s) 165, 495, 702
BstENI CCTNNNNNAGG 1 cut(s) 701
BstF5I GGATG 2 cut(s) 210, 482
BstH2I RGCGCY 1 cut(s) 212
BstHHI GCGC 3 cut(s) 211, 905, 978
BstKTI GATC 4 cut(s) 80, 190, 250, 505
BstMAI GTCTC 4 cut(s) 202, 901, 922, 929
BstMBI GATC 4 cut(s) 77, 187, 247, 502
BstMWI GCNNNNNNNGC 4 cut(s) 458, 461, 911, 948
BstNSI RCATGY 2 cut(s) 328, 868
BstPAI GACNNNNGTC 1 cut(s) 810
BstSLI GKGCMC 1 cut(s) 270
BstV1I GCAGC 6 cut(s) 198, 439, 448, 451, 734, 841
BstV2I GAAGAC 1 cut(s) 570
BstX2I RGATCY 1 cut(s) 502
BstYI RGATCY 1 cut(s) 502
BsuRI GGCC 2 cut(s) 224, 378
BtsCI GGATG 2 cut(s) 210, 482
BtsI GCAGTG 1 cut(s) 83
BtsIMutI CAGTG 2 cut(s) 83, 492
Cac8I GCNNGC 2 cut(s) 326, 866
CfoI GCGC 3 cut(s) 211, 905, 978
Cfr10I RCCGGY 1 cut(s) 378
Cfr13I GGNCC 2 cut(s) 222, 729
Csp6I GTAC 1 cut(s) 590
CspCI CAANNNNNGTGG 2 cut(s) 102, 137
CviAII CATG 6 cut(s) 325, 329, 865, 947, 952, 993
CviQI GTAC 1 cut(s) 590
DdeI CTNAG 3 cut(s) 165, 495, 702
DpnI GATC 4 cut(s) 79, 189, 249, 504
DpnII GATC 4 cut(s) 77, 187, 247, 502
DriI GACNNNNNGTC 1 cut(s) 914
EaeI YGGCCR 1 cut(s) 376
Eam1105I GACNNNNNGTC 1 cut(s) 914
Eco31I GGTCTC 2 cut(s) 901, 929
Eco32I GATATC 1 cut(s) 959
Eco47I GGWCC 1 cut(s) 729
Eco57I CTGAAG 2 cut(s) 11, 899
EcoNI CCTNNNNNAGG 1 cut(s) 701
EcoRI GAATTC 1 cut(s) 988
EcoRV GATATC 1 cut(s) 959
EcoT22I ATGCAT 2 cut(s) 330, 866
FaeI CATG 6 cut(s) 328, 332, 868, 950, 955, 996
FaqI GGGAC 1 cut(s) 715
FatI CATG 6 cut(s) 324, 328, 864, 946, 951, 992
Fnu4HI GCNGC 6 cut(s) 212, 453, 462, 465, 723, 855
FokI GGATG 2 cut(s) 217, 469
Fsp4HI GCNGC 6 cut(s) 212, 453, 462, 465, 723, 855
FspBI CTAG 2 cut(s) 755, 782
FspI TGCGCA 1 cut(s) 977
GlaI GCGC 3 cut(s) 210, 904, 977
GluI GCNGC 6 cut(s) 212, 453, 462, 465, 723, 855
GsaI CCCAGC 1 cut(s) 25
HaeII RGCGCY 1 cut(s) 212
HaeIII GGCC 2 cut(s) 224, 378
HapII CCGG 2 cut(s) 379, 678
HhaI GCGC 3 cut(s) 211, 905, 978
Hin1II CATG 6 cut(s) 328, 332, 868, 950, 955, 996
Hin6I GCGC 3 cut(s) 209, 903, 976
HinP1I GCGC 3 cut(s) 209, 903, 976
HincII GTYRAC 1 cut(s) 114
HindII GTYRAC 1 cut(s) 114
HinfI GANTC 5 cut(s) 7, 169, 647, 707, 806
HpaII CCGG 2 cut(s) 379, 678
HphI GGTGA 2 cut(s) 551, 589
Hpy166II GTNNAC 3 cut(s) 114, 268, 492
Hpy188I TCNGA 8 cut(s) 30, 145, 166, 174, 409, 712, 761, 879
Hpy188III TCNNGA 5 cut(s) 98, 638, 678, 704, 843
Hpy8I GTNNAC 3 cut(s) 114, 268, 492
HpyAV CCTTC 1 cut(s) 482
HpyF10VI GCNNNNNNNGC 4 cut(s) 458, 461, 911, 948
HpyF3I CTNAG 3 cut(s) 165, 495, 702
Hsp92II CATG 6 cut(s) 328, 332, 868, 950, 955, 996
HspAI GCGC 3 cut(s) 209, 903, 976
Kpn2I TCCGGA 1 cut(s) 677
Kzo9I GATC 4 cut(s) 77, 187, 247, 502
LmnI GCTCC 1 cut(s) 965
Lsp1109I GCAGC 6 cut(s) 198, 439, 448, 451, 734, 841
LweI GCATC 1 cut(s) 291
MaeI CTAG 2 cut(s) 755, 782
MaeIII GTNAC 3 cut(s) 232, 381, 539
MalI GATC 4 cut(s) 79, 189, 249, 504
MboI GATC 4 cut(s) 77, 187, 247, 502
MboII GAAGA 4 cut(s) 575, 592, 732, 802
MflI RGATCY 1 cut(s) 502
MhlI GDGCHC 1 cut(s) 270
MluCI AATT 9 cut(s) 176, 352, 412, 442, 599, 605, 614, 873, 988
MlyI GAGTC 2 cut(s) 656, 800
MmeI TCCRAC 1 cut(s) 269
MnlI CCTC 8 cut(s) 47, 60, 354, 441, 490, 536, 696, 844
Mph1103I ATGCAT 2 cut(s) 330, 866
MroI TCCGGA 1 cut(s) 677
MroXI GAANNNNTTC 1 cut(s) 609
MseI TTAA 3 cut(s) 441, 617, 822
MslI CAYNNNNRTG 3 cut(s) 255, 497, 997
MspI CCGG 2 cut(s) 379, 678
Mva1269I GAATGC 2 cut(s) 129, 160
MwoI GCNNNNNNNGC 4 cut(s) 458, 461, 911, 948
NdeII GATC 4 cut(s) 77, 187, 247, 502
NlaIII CATG 6 cut(s) 328, 332, 868, 950, 955, 996
NlaIV GGNNCC 2 cut(s) 223, 731
NmuCI GTSAC 1 cut(s) 539
NsbI TGCGCA 1 cut(s) 977
NsiI ATGCAT 2 cut(s) 330, 866
NspI RCATGY 2 cut(s) 328, 868
OliI CACNNNNGTG 2 cut(s) 255, 497
PaeI GCATGC 2 cut(s) 328, 868
PctI GAATGC 2 cut(s) 129, 160
PdmI GAANNNNTTC 1 cut(s) 609
PfeI GAWTC 3 cut(s) 7, 169, 707
PkrI GCNGC 6 cut(s) 213, 454, 463, 466, 724, 856
PleI GAGTC 2 cut(s) 655, 800
PpsI GAGTC 2 cut(s) 655, 800
PshAI GACNNNNGTC 1 cut(s) 810
PshBI ATTAAT 2 cut(s) 617, 822
PspFI CCCAGC 1 cut(s) 21
PspN4I GGNNCC 2 cut(s) 223, 731
PspPI GGNCC 2 cut(s) 222, 729
PsuI RGATCY 1 cut(s) 502
RsaI GTAC 1 cut(s) 591
RsaNI GTAC 1 cut(s) 590
RseI CAYNNNNRTG 3 cut(s) 255, 497, 997
SaqAI TTAA 3 cut(s) 441, 617, 822
SatI GCNGC 6 cut(s) 212, 453, 462, 465, 723, 855
Sau3AI GATC 4 cut(s) 77, 187, 247, 502
Sau96I GGNCC 2 cut(s) 222, 729
SchI GAGTC 2 cut(s) 656, 800
SduI GDGCHC 1 cut(s) 270
SfaNI GCATC 1 cut(s) 291
SinI GGWCC 1 cut(s) 729
SmiMI CAYNNNNRTG 3 cut(s) 255, 497, 997
SmlI CTYRAG 4 cut(s) 305, 370, 841, 898
SmoI CTYRAG 4 cut(s) 305, 370, 841, 898
SpeI ACTAGT 1 cut(s) 754
SphI GCATGC 2 cut(s) 328, 868
Sse9I AATT 9 cut(s) 176, 352, 412, 442, 599, 605, 614, 873, 988
SsiI CCGC 1 cut(s) 322
SspMI CTAG 2 cut(s) 755, 782
TaqI TCGA 2 cut(s) 688, 814
TaqII GACCGA 1 cut(s) 717
TasI AATT 9 cut(s) 176, 352, 412, 442, 599, 605, 614, 873, 988
TatI WGTACW 1 cut(s) 589
TfiI GAWTC 3 cut(s) 7, 169, 707
Tru1I TTAA 3 cut(s) 441, 617, 822
Tru9I TTAA 3 cut(s) 441, 617, 822
TscAI CASTG 2 cut(s) 90, 499
TseFI GTSAC 1 cut(s) 539
TseI GCWGC 6 cut(s) 211, 452, 461, 464, 722, 854
Tsp45I GTSAC 1 cut(s) 539
TspDTI ATGAA 3 cut(s) 840, 935, 981
TspRI CASTG 2 cut(s) 90, 499
VneI GTGCAC 1 cut(s) 266
VpaK11BI GGWCC 1 cut(s) 729
VspI ATTAAT 2 cut(s) 617, 822
XagI CCTNNNNNAGG 1 cut(s) 701
XapI RAATTY 1 cut(s) 988
XceI RCATGY 2 cut(s) 328, 868
XcmI CCANNNNNNNNNTGG 1 cut(s) 115
XmnI GAANNNNTTC 1 cut(s) 609
XspI CTAG 2 cut(s) 755, 782
Zsp2I ATGCAT 2 cut(s) 330, 866
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.