MD05G1245400.v1.1

Mitochondrial translocator assembly and maintenance protein 41 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0003914
Physical Location & Seq
Reverse (-)
37736897 .. 37739967
3071 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1245400.v1.1.491

Sequence Viewer

Length: 1008 bp
ATGGAGAATCACGACGAAGCGCAGCTCCAGAGTTTTCTCAAAACTCTCCCCCCTGTTGAGTTCTGCTGTGTCTATGGCTCATCTCTTCACCCCAGCCATCCTTCCACTGCCACGTCAACTATGGTGGATTGCATTCTTGGTGTATCAGATCCCCAGCAATGGCATTCTGAGAATTTGAAATTGAACAACGATCATTACGCCTCATGGATGGTGCTCCTTGGTGGAGCAAGGCTGATTACTGGCGTTGCAGATGAAATCGGTGTAGGAGTGCACTTCAATCCTTTTGTTAGTTGGAATGACAAGACGTATAAGTATGGGGTTGTTGGCATGCACAACTTGGTTCAGGATGTGCTAACTTGGGAGAGGTTCTATTTGAGCGGCCGATTACAAAAGCCAGTTCAGGTACTTTTGGATAATTCGGATATCACAAATGTAAACTCGGTTAATTTGAGGGCTGCAATGTCTGCTGCGCTCCTTCTTTTGCCATCCAATTTCACTGAGGAAGATCTGTATGCCAAAATATGTAGCCTCTCGTATATGGGTGACGTGCGTATGCTTTTTGCAGAGGACAGAAATAAGGTGAAGAAAATAGTACAAGGGCAATTTGAATTGTTCCAGTCGATGTATAAGCCATTTATAGAAGAGTATGAGACCAAAGAGTTTTTGAGACGCTCGTTATCTGGGAATCCTCAACCAATTATATCTCAGGATTGTGGTTTATCAGCCGCCCGATCTCTCGTTTCTTCTCTGCCCCCGATGATCAGAAGCCAAATGGGGATGAAGCTAGGAGAGAAGAAAGCACTGTGCGGCTCTGGTCGAGCTGTTCACGATATTGTGATTGGATCCAAAGACGAGGCTGCTAAATGCATGCAGAGTATTTTGAGGCGAAAGGTCATGGTTTCAAGTGCAAGACAGGCAGTAGCTGGTCTCATAGCTGTTGGTGGCATTAATGGCATGAGATATCTTGGTGCTAAAATGAGCAAGGCATGGAAATCCTGGAGATCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Mmp37

Protein Analysis

336

Amino Acids

37.23

Weight (kDa)

8.74

Isoelectric Point (pI)

52.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Tam41_Mmp37 PF09139 9 - 328 6e-103 Phosphatidate cytidylyltransferase, mitochondrial
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 378
AciI CCGC 3 cut(s) 378, 726, 807
AclWI GGATC 3 cut(s) 143, 837, 850
AcoI YGGCCR 1 cut(s) 379
AcsI RAATTY 1 cut(s) 172
AfaI GTAC 2 cut(s) 405, 594
AfiI CCNNNNNNNGG 1 cut(s) 159
AgsI TTSAA 5 cut(s) 178, 184, 277, 608, 903
AjiI CACGTC 2 cut(s) 114, 547
AjnI CCWGG 1 cut(s) 995
AluBI AGCT 5 cut(s) 25, 784, 821, 923, 935
AluI AGCT 5 cut(s) 25, 784, 821, 923, 935
Alw21I GWGCWC 2 cut(s) 216, 273
Alw26I GTCTC 3 cut(s) 644, 661, 932
Alw44I GTGCAC 1 cut(s) 269
AlwI GGATC 3 cut(s) 143, 837, 850
AlwNI CAGNNNCTG 1 cut(s) 923
AoxI GGCC 1 cut(s) 379
ApaLI GTGCAC 1 cut(s) 269
ApeKI GCWGC 4 cut(s) 22, 455, 467, 857
ApoI RAATTY 1 cut(s) 172
AseI ATTAAT 1 cut(s) 948
AspLEI GCGC 2 cut(s) 22, 472
AsuHPI GGTGA 3 cut(s) 80, 554, 592
BaeGI GKGCMC 1 cut(s) 273
BamHI GGATCC 1 cut(s) 842
Bbv12I GWGCWC 2 cut(s) 216, 273
BbvI GCAGC 4 cut(s) 34, 442, 454, 844
BccI CCATC 3 cut(s) 105, 202, 493
BciT130I CCWGG 1 cut(s) 997
BclI TGATCA 1 cut(s) 759
BcoDI GTCTC 3 cut(s) 644, 661, 932
BfaI CTAG 1 cut(s) 785
BglII AGATCT 1 cut(s) 505
BisI GCNGC 7 cut(s) 23, 379, 456, 468, 726, 808, 858
BlsI GCNGC 7 cut(s) 24, 380, 457, 469, 727, 809, 859
Bme1390I CCNGG 1 cut(s) 997
BmgBI CACGTC 2 cut(s) 114, 547
BmiI GGNNCC 1 cut(s) 844
BmrFI CCNGG 1 cut(s) 997
BpmI CTGGAG 1 cut(s) 11
BsaI GGTCTC 2 cut(s) 644, 932
BsaJI CCNNGG 1 cut(s) 217
Bsc4I CCNNNNNNNGG 1 cut(s) 159
Bse1I ACTGG 3 cut(s) 244, 395, 616
Bse3DI GCAATG 2 cut(s) 164, 465
BseBI CCWGG 1 cut(s) 997
BseDI CCNNGG 1 cut(s) 217
BseGI GGATG 5 cut(s) 97, 213, 352, 485, 783
BseLI CCNNNNNNNGG 1 cut(s) 159
BseMI GCAATG 2 cut(s) 164, 465
BseMII CTCAG 3 cut(s) 159, 489, 719
BseNI ACTGG 3 cut(s) 244, 395, 616
BseSI GKGCMC 1 cut(s) 273
BseX3I CGGCCG 1 cut(s) 379
BseXI GCAGC 4 cut(s) 34, 442, 454, 844
BseYI CCCAGC 2 cut(s) 92, 153
Bsh1285I CGRYCG 1 cut(s) 382
BshFI GGCC 1 cut(s) 381
BsiEI CGRYCG 1 cut(s) 382
BsiHKAI GWGCWC 2 cut(s) 216, 273
BslI CCNNNNNNNGG 1 cut(s) 159
BsmAI GTCTC 3 cut(s) 644, 661, 932
BsmBI CGTCTC 1 cut(s) 661
BsmI GAATGC 2 cut(s) 132, 163
BsnI GGCC 1 cut(s) 381
Bso31I GGTCTC 2 cut(s) 644, 932
Bsp1286I GDGCHC 2 cut(s) 216, 273
Bsp143I GATC 7 cut(s) 148, 190, 505, 731, 759, 842, 1001
BspACI CCGC 3 cut(s) 378, 726, 807
BspANI GGCC 1 cut(s) 381
BspCNI CTCAG 3 cut(s) 160, 490, 718
BspLI GGNNCC 1 cut(s) 844
BspPI GGATC 3 cut(s) 143, 837, 850
BspTNI GGTCTC 2 cut(s) 644, 932
BsrBI CCGCTC 1 cut(s) 378
BsrDI GCAATG 2 cut(s) 164, 465
BsrI ACTGG 3 cut(s) 244, 395, 616
BssECI CCNNGG 1 cut(s) 217
BssMI GATC 7 cut(s) 148, 190, 505, 731, 759, 842, 1001
BssT1I CCWWGG 1 cut(s) 217
Bst2UI CCWGG 1 cut(s) 997
Bst4CI ACNGT 1 cut(s) 804
Bst6I CTCTTC 2 cut(s) 90, 636
BstAPI GCANNNNNTGC 1 cut(s) 464
BstC8I GCNNGC 2 cut(s) 329, 869
BstDEI CTNAG 3 cut(s) 168, 498, 705
BstF5I GGATG 5 cut(s) 97, 213, 352, 485, 783
BstHHI GCGC 2 cut(s) 22, 472
BstKTI GATC 7 cut(s) 151, 193, 508, 734, 762, 845, 1004
BstMAI GTCTC 3 cut(s) 644, 661, 932
BstMBI GATC 7 cut(s) 148, 190, 505, 731, 759, 842, 1001
BstMCI CGRYCG 1 cut(s) 382
BstMWI GCNNNNNNNGC 3 cut(s) 464, 914, 951
BstNI CCWGG 1 cut(s) 997
BstNSI RCATGY 2 cut(s) 331, 871
BstSCI CCNGG 1 cut(s) 995
BstSLI GKGCMC 1 cut(s) 273
BstV1I GCAGC 4 cut(s) 34, 442, 454, 844
BstX2I RGATCY 3 cut(s) 148, 505, 842
BstYI RGATCY 3 cut(s) 148, 505, 842
BstZI CGGCCG 1 cut(s) 379
BsuRI GGCC 1 cut(s) 381
BtrI CACGTC 2 cut(s) 114, 547
BtsCI GGATG 5 cut(s) 97, 213, 352, 485, 783
BtsI GCAGTG 1 cut(s) 105
BtsIMutI CAGTG 3 cut(s) 105, 495, 800
Cac8I GCNNGC 2 cut(s) 329, 869
CaiI CAGNNNCTG 1 cut(s) 923
CfoI GCGC 2 cut(s) 22, 472
CseI GACGC 1 cut(s) 678
Csp6I GTAC 2 cut(s) 404, 593
CspCI CAANNNNNGTGG 2 cut(s) 105, 140
CviAII CATG 6 cut(s) 204, 328, 868, 895, 955, 987
CviQI GTAC 2 cut(s) 404, 593
DdeI CTNAG 3 cut(s) 168, 498, 705
DpnI GATC 7 cut(s) 150, 192, 507, 733, 761, 844, 1003
DpnII GATC 7 cut(s) 148, 190, 505, 731, 759, 842, 1001
EaeI YGGCCR 1 cut(s) 379
EagI CGGCCG 1 cut(s) 379
Eam1104I CTCTTC 2 cut(s) 90, 636
EarI CTCTTC 2 cut(s) 90, 636
EclXI CGGCCG 1 cut(s) 379
Eco130I CCWWGG 1 cut(s) 217
Eco31I GGTCTC 2 cut(s) 644, 932
Eco32I GATATC 2 cut(s) 424, 962
Eco52I CGGCCG 1 cut(s) 379
EcoRII CCWGG 1 cut(s) 995
EcoRV GATATC 2 cut(s) 424, 962
EcoT14I CCWWGG 1 cut(s) 217
EcoT22I ATGCAT 1 cut(s) 869
ErhI CCWWGG 1 cut(s) 217
Esp3I CGTCTC 1 cut(s) 661
FaeI CATG 6 cut(s) 207, 331, 871, 898, 958, 990
FatI CATG 6 cut(s) 203, 327, 867, 894, 954, 986
FbaI TGATCA 1 cut(s) 759
Fnu4HI GCNGC 7 cut(s) 23, 379, 456, 468, 726, 808, 858
FokI GGATG 5 cut(s) 84, 220, 359, 472, 790
Fsp4HI GCNGC 7 cut(s) 23, 379, 456, 468, 726, 808, 858
FspBI CTAG 1 cut(s) 785
GlaI GCGC 2 cut(s) 21, 471
GluI GCNGC 7 cut(s) 23, 379, 456, 468, 726, 808, 858
GsaI CCCAGC 2 cut(s) 96, 157
GsuI CTGGAG 1 cut(s) 11
HaeIII GGCC 1 cut(s) 381
HgaI GACGC 1 cut(s) 678
HhaI GCGC 2 cut(s) 22, 472
Hin1II CATG 6 cut(s) 207, 331, 871, 898, 958, 990
Hin6I GCGC 2 cut(s) 20, 470
HinP1I GCGC 2 cut(s) 20, 470
HincII GTYRAC 1 cut(s) 117
HindII GTYRAC 1 cut(s) 117
HinfI GANTC 2 cut(s) 7, 685
HphI GGTGA 3 cut(s) 80, 554, 592
Hpy166II GTNNAC 4 cut(s) 117, 271, 436, 826
Hpy188I TCNGA 4 cut(s) 148, 169, 421, 764
Hpy188III TCNNGA 5 cut(s) 11, 28, 344, 707, 827
Hpy8I GTNNAC 4 cut(s) 117, 271, 436, 826
Hpy99I CGWCG 1 cut(s) 17
HpyAV CCTTC 2 cut(s) 111, 485
HpyCH4III ACNGT 1 cut(s) 804
HpyCH4IV ACGT 3 cut(s) 113, 305, 546
HpyCH4V TGCA 9 cut(s) 132, 248, 271, 331, 458, 563, 867, 871, 908
HpyF10VI GCNNNNNNNGC 3 cut(s) 464, 914, 951
HpyF3I CTNAG 3 cut(s) 168, 498, 705
HpySE526I ACGT 3 cut(s) 113, 305, 546
Hsp92II CATG 6 cut(s) 207, 331, 871, 898, 958, 990
HspAI GCGC 2 cut(s) 20, 470
Ksp22I TGATCA 1 cut(s) 759
Kzo9I GATC 7 cut(s) 148, 190, 505, 731, 759, 842, 1001
LmnI GCTCC 4 cut(s) 30, 219, 224, 477
Lsp1109I GCAGC 4 cut(s) 34, 442, 454, 844
MaeI CTAG 1 cut(s) 785
MaeII ACGT 3 cut(s) 113, 305, 546
MaeIII GTNAC 1 cut(s) 542
MalI GATC 7 cut(s) 150, 192, 507, 733, 761, 844, 1003
MbiI CCGCTC 1 cut(s) 378
MboI GATC 7 cut(s) 148, 190, 505, 731, 759, 842, 1001
MboII GAAGA 6 cut(s) 77, 515, 595, 653, 735, 805
MflI RGATCY 3 cut(s) 148, 505, 842
MhlI GDGCHC 2 cut(s) 216, 273
MluCI AATT 8 cut(s) 172, 179, 415, 445, 490, 602, 608, 696
MmeI TCCRAC 1 cut(s) 272
MnlI CCTC 9 cut(s) 211, 357, 444, 493, 539, 559, 699, 847, 876
Mph1103I ATGCAT 1 cut(s) 869
MseI TTAA 2 cut(s) 444, 948
MspR9I CCNGG 1 cut(s) 997
Mva1269I GAATGC 2 cut(s) 132, 163
MvaI CCWGG 1 cut(s) 997
MwoI GCNNNNNNNGC 3 cut(s) 464, 914, 951
NdeII GATC 7 cut(s) 148, 190, 505, 731, 759, 842, 1001
NlaIII CATG 6 cut(s) 207, 331, 871, 898, 958, 990
NlaIV GGNNCC 1 cut(s) 844
NmuCI GTSAC 1 cut(s) 542
NsiI ATGCAT 1 cut(s) 869
NspI RCATGY 2 cut(s) 331, 871
PaeI GCATGC 2 cut(s) 331, 871
PctI GAATGC 2 cut(s) 132, 163
PfeI GAWTC 2 cut(s) 7, 685
PfoI TCCNGGA 1 cut(s) 995
PkrI GCNGC 7 cut(s) 24, 380, 457, 469, 727, 809, 859
PshBI ATTAAT 1 cut(s) 948
Psp6I CCWGG 1 cut(s) 995
PspFI CCCAGC 2 cut(s) 92, 153
PspGI CCWGG 1 cut(s) 995
PspN4I GGNNCC 1 cut(s) 844
PstNI CAGNNNCTG 1 cut(s) 923
PsuI RGATCY 3 cut(s) 148, 505, 842
RsaI GTAC 2 cut(s) 405, 594
RsaNI GTAC 2 cut(s) 404, 593
SaqAI TTAA 2 cut(s) 444, 948
SatI GCNGC 7 cut(s) 23, 379, 456, 468, 726, 808, 858
Sau3AI GATC 7 cut(s) 148, 190, 505, 731, 759, 842, 1001
ScrFI CCNGG 1 cut(s) 997
SduI GDGCHC 2 cut(s) 216, 273
SphI GCATGC 2 cut(s) 331, 871
Sse9I AATT 8 cut(s) 172, 179, 415, 445, 490, 602, 608, 696
SsiI CCGC 3 cut(s) 378, 726, 807
SspMI CTAG 1 cut(s) 785
StyD4I CCNGG 1 cut(s) 995
StyI CCWWGG 1 cut(s) 217
TaaI ACNGT 1 cut(s) 804
TaiI ACGT 3 cut(s) 116, 308, 549
TaqI TCGA 2 cut(s) 620, 817
TasI AATT 8 cut(s) 172, 179, 415, 445, 490, 602, 608, 696
TatI WGTACW 1 cut(s) 592
TauI GCSGC 3 cut(s) 381, 728, 810
TfiI GAWTC 2 cut(s) 7, 685
Tru1I TTAA 2 cut(s) 444, 948
Tru9I TTAA 2 cut(s) 444, 948
TscAI CASTG 3 cut(s) 112, 502, 807
TseFI GTSAC 1 cut(s) 542
TseI GCWGC 4 cut(s) 22, 455, 467, 857
Tsp45I GTSAC 1 cut(s) 542
TspDTI ATGAA 2 cut(s) 267, 794
TspRI CASTG 3 cut(s) 112, 502, 807
VneI GTGCAC 1 cut(s) 269
VspI ATTAAT 1 cut(s) 948
XapI RAATTY 1 cut(s) 172
XceI RCATGY 2 cut(s) 331, 871
XcmI CCANNNNNNNNNTGG 1 cut(s) 118
XspI CTAG 1 cut(s) 785
Zsp2I ATGCAT 1 cut(s) 869
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.