Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0003914

Physical Location & Seq

Genomic Coordinates Reverse (-)

4105661 .. 4109370

Gene Structure 3710 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G025500.8

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

ATGGAAAATCACGACAAAGCCCAGCTTCTAAGTTTTCTCAAAACTCTTCCCCCTGTTGAGTTCTGCTGTGTCTATGGCTCATTTCTTCATCCCAACAATCCTGGCAGTGCAAAGTCAACCATGGTAGATTGCATTCTTGGTGTATCCAATCCCCGACAATGGCATTCTGAGAATCTGACATTGAACAACGATCATTATTCCTCATGGATGGTGCTTCTTGGTGGGGCAAGACTGATTACCGACGTTGCAGATGAACTAGGTGTGGGGGTGCACTTCAATCCTTTTGTTAGTTGGAACGACAAGATGTTCAAGTATGGGGTTGTTCGCATGCAGGACTTGGTTCAGGACATACTAAATTGGGAGAGGTTCTATTTGAGCGGCCGATTACAAAAACCAGTTCATGTACTTCTGGATAATTTGGATATCGCAAATGTAAACTCGGTTAATTTGAGGGCTGCAATGTCTGCAGCTCTCCTTCTTTTGCCGTCCAAGTTCACTGAGGAAGAATTGTATGCCAAAATATGTAGCCTCTCGTATATGGGCGACTTGCGTATGCTTTTTGCAGAGGACAGAAATAAGGTGAAGAAAATAGTACAAGGGCAATTTGAATTGTTCCGGCTGATGTATAAGCCATTTATTGAAGAGTATGAGACCAAAGAGTTGTTGAGACGCTGTTTATCTGGGAATACTCGACCAATCATATCTCAGGATGGTGGTTTATTAGCAGCTCGATCTCTTGTTTCTTCTCTGCCCCCAATGGTCAGAAGCCAAATGGGGATGAAGCTAGGAGAAAAGAAAGTACTGTGTGACTCTGGTCGAGTTATTCAGGAAATTGTGATTGGCTCCAAAGACGAGGCTGCTAAATGCATGCAGACTATTCTGCGGCGAAAGGTCATGGTTTCGAGTGCAAGACAGGCCTTGTCTGGTCTCCTGGCTGCTGGTGGCATTAATGGCATGAGATATCTTGGTGCTAAAATGAGCAAGGCTTGGAAATCCTGGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mmp37

Protein Analysis

335

Amino Acids

37.61

Weight (kDa)

9.24

Isoelectric Point (pI)

45.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003914)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47630 AT3G47630 AT3G47630 AT3G47630 AT3G47630 AT3G47630
fragaria_vesca	FvH4_3g13050
malus_domestica	MD05G1245400.v1.1
prunus_persica	Prupe.4G118500_v2.0.a1 Prupe.4G118500_v2.0.a1 Prupe.4G118500_v2.0.a1 Prupe.4G118500_v2.0.a1 Prupe.7G025500_v2.0.a1 Prupe.7G025500_v2.0.a1 Prupe.7G025500_v2.0.a1 Prupe.7G025500_v2.0.a1 Prupe.7G025500_v2.0.a1 Prupe.7G025500_v2.0.a1 Prupe.7G025500_v2.0.a1 Prupe.7G025500_v2.0.a1 Prupe.7G025500_v2.0.a1 Prupe.7G025500_v2.0.a1
pyrus_communis	pycom05g22150
rosa_chinensis	RchiOBHm_Chr5g0021241
rosa_laevigata	RLG00000032598
rosa_multiflora	Rmu_co8341691.1_g000001
rosa_roxburghii	Rroxscaffold_1G00057260
rosa_rugosa	Rorug05G0065400 Rorug05G0065500
rosa_samantha	Rh5AG154500 Rh5BG154100 Rh5CG167700 Rh5DG154600
rosa_wichuraiana	Rw5G013770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	378
AciI	CCGC	2 cut(s)	378, 883
AcoI	YGGCCR	1 cut(s)	379
AfaI	GTAC	3 cut(s)	405, 594, 801
AfiI	CCNNNNNNNGG	1 cut(s)	159
AgsI	TTSAA	5 cut(s)	184, 277, 310, 608, 641
AjnI	CCWGG	3 cut(s)	100, 930, 995
AjuI	GAANNNNNNNTTGG	2 cut(s)	822, 854
AluBI	AGCT	4 cut(s)	25, 470, 728, 784
AluI	AGCT	4 cut(s)	25, 470, 728, 784
Alw21I	GWGCWC	1 cut(s)	273
Alw26I	GTCTC	3 cut(s)	644, 661, 932
Alw44I	GTGCAC	1 cut(s)	269
AoxI	GGCC	2 cut(s)	379, 915
ApaLI	GTGCAC	1 cut(s)	269
ApeKI	GCWGC	5 cut(s)	455, 467, 725, 857, 935
AseI	ATTAAT	1 cut(s)	948
AsuHPI	GGTGA	1 cut(s)	592
BaeGI	GKGCMC	1 cut(s)	273
Bbv12I	GWGCWC	1 cut(s)	273
BbvI	GCAGC	5 cut(s)	442, 479, 737, 844, 922
BccI	CCATC	2 cut(s)	202, 704
BceAI	ACGGC	1 cut(s)	469
BciT130I	CCWGG	3 cut(s)	102, 932, 997
BciVI	GTATCC	1 cut(s)	154
BcoDI	GTCTC	3 cut(s)	644, 661, 932
BfaI	CTAG	2 cut(s)	257, 785
BfmI	CTRYAG	1 cut(s)	465
BfuI	GTATCC	1 cut(s)	154
BisI	GCNGC	7 cut(s)	379, 456, 468, 726, 858, 884, 936
BlsI	GCNGC	7 cut(s)	380, 457, 469, 727, 859, 885, 937
BmcAI	AGTACT	1 cut(s)	801
Bme1390I	CCNGG	3 cut(s)	102, 932, 997
BmiI	GGNNCC	1 cut(s)	844
BmrFI	CCNGG	3 cut(s)	102, 932, 997
BoxI	GACNNNNGTC	1 cut(s)	813
BsaI	GGTCTC	2 cut(s)	644, 932
BsaJI	CCNNGG	1 cut(s)	120
Bsc4I	CCNNNNNNNGG	1 cut(s)	159
Bse1I	ACTGG	1 cut(s)	395
Bse3DI	GCAATG	1 cut(s)	465
BseBI	CCWGG	3 cut(s)	102, 932, 997
BseDI	CCNNGG	1 cut(s)	120
BseGI	GGATG	4 cut(s)	88, 213, 715, 783
BseLI	CCNNNNNNNGG	1 cut(s)	159
BseMI	GCAATG	1 cut(s)	465
BseMII	CTCAG	3 cut(s)	159, 489, 719
BseNI	ACTGG	1 cut(s)	395
BseSI	GKGCMC	1 cut(s)	273
BseX3I	CGGCCG	1 cut(s)	379
BseXI	GCAGC	5 cut(s)	442, 479, 737, 844, 922
BseYI	CCCAGC	1 cut(s)	21
Bsh1285I	CGRYCG	1 cut(s)	382
BshFI	GGCC	2 cut(s)	381, 917
BsiEI	CGRYCG	1 cut(s)	382
BsiHKAI	GWGCWC	1 cut(s)	273
BsiSI	CCGG	1 cut(s)	616
BslI	CCNNNNNNNGG	1 cut(s)	159
BsmAI	GTCTC	3 cut(s)	644, 661, 932
BsmBI	CGTCTC	1 cut(s)	661
BsmI	GAATGC	2 cut(s)	132, 163
BsnI	GGCC	2 cut(s)	381, 917
Bso31I	GGTCTC	2 cut(s)	644, 932
Bsp1286I	GDGCHC	1 cut(s)	273
Bsp143I	GATC	2 cut(s)	190, 731
Bsp19I	CCATGG	1 cut(s)	120
BspACI	CCGC	2 cut(s)	378, 883
BspANI	GGCC	2 cut(s)	381, 917
BspCNI	CTCAG	3 cut(s)	160, 490, 718
BspLI	GGNNCC	1 cut(s)	844
BspMAI	CTGCAG	1 cut(s)	469
BspTNI	GGTCTC	2 cut(s)	644, 932
BsrBI	CCGCTC	1 cut(s)	378
BsrDI	GCAATG	1 cut(s)	465
BsrI	ACTGG	1 cut(s)	395
BssECI	CCNNGG	1 cut(s)	120
BssMI	GATC	2 cut(s)	190, 731
BssT1I	CCWWGG	1 cut(s)	120
Bst2UI	CCWGG	3 cut(s)	102, 932, 997
Bst4CI	ACNGT	1 cut(s)	804
Bst6I	CTCTTC	2 cut(s)	51, 636
BstAPI	GCANNNNNTGC	1 cut(s)	464
BstC8I	GCNNGC	2 cut(s)	329, 869
BstDEI	CTNAG	4 cut(s)	29, 168, 498, 705
BstDSI	CCRYGG	1 cut(s)	120
BstF5I	GGATG	4 cut(s)	88, 213, 715, 783
BstKTI	GATC	2 cut(s)	193, 734
BstMAI	GTCTC	3 cut(s)	644, 661, 932
BstMBI	GATC	2 cut(s)	190, 731
BstMCI	CGRYCG	1 cut(s)	382
BstMWI	GCNNNNNNNGC	3 cut(s)	464, 914, 951
BstNI	CCWGG	3 cut(s)	102, 932, 997
BstNSI	RCATGY	2 cut(s)	331, 871
BstPAI	GACNNNNGTC	1 cut(s)	813
BstSCI	CCNGG	3 cut(s)	100, 930, 995
BstSFI	CTRYAG	1 cut(s)	465
BstSLI	GKGCMC	1 cut(s)	273
BstV1I	GCAGC	5 cut(s)	442, 479, 737, 844, 922
BstZI	CGGCCG	1 cut(s)	379
BsuI	GTATCC	1 cut(s)	154
BsuRI	GGCC	2 cut(s)	381, 917
BtgI	CCRYGG	1 cut(s)	120
BtsCI	GGATG	4 cut(s)	88, 213, 715, 783
BtsI	GCAGTG	1 cut(s)	112
BtsIMutI	CAGTG	2 cut(s)	112, 495
Cac8I	GCNNGC	2 cut(s)	329, 869
CseI	GACGC	1 cut(s)	678
Csp6I	GTAC	3 cut(s)	404, 593, 800
CviAII	CATG	7 cut(s)	121, 204, 328, 401, 868, 895, 955
CviQI	GTAC	3 cut(s)	404, 593, 800
DdeI	CTNAG	4 cut(s)	29, 168, 498, 705
DpnI	GATC	2 cut(s)	192, 733
DpnII	GATC	2 cut(s)	190, 731
EaeI	YGGCCR	1 cut(s)	379
EagI	CGGCCG	1 cut(s)	379
Eam1104I	CTCTTC	2 cut(s)	51, 636
EarI	CTCTTC	2 cut(s)	51, 636
EclXI	CGGCCG	1 cut(s)	379
Eco130I	CCWWGG	1 cut(s)	120
Eco147I	AGGCCT	1 cut(s)	917
Eco31I	GGTCTC	2 cut(s)	644, 932
Eco32I	GATATC	2 cut(s)	424, 962
Eco52I	CGGCCG	1 cut(s)	379
EcoRII	CCWGG	3 cut(s)	100, 930, 995
EcoRV	GATATC	2 cut(s)	424, 962
EcoT14I	CCWWGG	1 cut(s)	120
EcoT22I	ATGCAT	1 cut(s)	869
ErhI	CCWWGG	1 cut(s)	120
Esp3I	CGTCTC	1 cut(s)	661
FaeI	CATG	7 cut(s)	124, 207, 331, 404, 871, 898, 958
FalI	AAGNNNNNCTT	2 cut(s)	9, 41
FatI	CATG	7 cut(s)	120, 203, 327, 400, 867, 894, 954
Fnu4HI	GCNGC	7 cut(s)	379, 456, 468, 726, 858, 884, 936
FokI	GGATG	4 cut(s)	75, 220, 722, 790
Fsp4HI	GCNGC	7 cut(s)	379, 456, 468, 726, 858, 884, 936
FspBI	CTAG	2 cut(s)	257, 785
GluI	GCNGC	7 cut(s)	379, 456, 468, 726, 858, 884, 936
GsaI	CCCAGC	1 cut(s)	25
HaeIII	GGCC	2 cut(s)	381, 917
HapII	CCGG	1 cut(s)	616
HgaI	GACGC	1 cut(s)	678
Hin1II	CATG	7 cut(s)	124, 207, 331, 404, 871, 898, 958
HincII	GTYRAC	1 cut(s)	117
HindII	GTYRAC	1 cut(s)	117
HinfI	GANTC	2 cut(s)	172, 809
HpaII	CCGG	1 cut(s)	616
HphI	GGTGA	1 cut(s)	592
Hpy166II	GTNNAC	4 cut(s)	117, 271, 436, 495
Hpy188I	TCNGA	3 cut(s)	169, 177, 764
Hpy188III	TCNNGA	5 cut(s)	11, 344, 410, 707, 827
Hpy8I	GTNNAC	4 cut(s)	117, 271, 436, 495
Hpy99I	CGWCG	1 cut(s)	245
HpyAV	CCTTC	1 cut(s)	485
HpyCH4III	ACNGT	1 cut(s)	804
HpyCH4IV	ACGT	1 cut(s)	243
HpyF10VI	GCNNNNNNNGC	3 cut(s)	464, 914, 951
HpyF3I	CTNAG	4 cut(s)	29, 168, 498, 705
HpySE526I	ACGT	1 cut(s)	243
Hsp92II	CATG	7 cut(s)	124, 207, 331, 404, 871, 898, 958
Kzo9I	GATC	2 cut(s)	190, 731
LmnI	GCTCC	1 cut(s)	848
Lsp1109I	GCAGC	5 cut(s)	442, 479, 737, 844, 922
MaeI	CTAG	2 cut(s)	257, 785
MaeII	ACGT	1 cut(s)	243
MaeIII	GTNAC	1 cut(s)	806
MalI	GATC	2 cut(s)	192, 733
MbiI	CCGCTC	1 cut(s)	378
MboI	GATC	2 cut(s)	190, 731
MboII	GAAGA	6 cut(s)	38, 77, 515, 595, 653, 735
MhlI	GDGCHC	1 cut(s)	273
MluCI	AATT	7 cut(s)	355, 415, 445, 506, 602, 608, 831
MlyI	GAGTC	1 cut(s)	803
MmeI	TCCRAC	1 cut(s)	272
MnlI	CCTC	7 cut(s)	211, 357, 444, 493, 539, 559, 847
Mph1103I	ATGCAT	1 cut(s)	869
MseI	TTAA	2 cut(s)	444, 948
MspI	CCGG	1 cut(s)	616
MspR9I	CCNGG	3 cut(s)	102, 932, 997
Mva1269I	GAATGC	2 cut(s)	132, 163
MvaI	CCWGG	3 cut(s)	102, 932, 997
MwoI	GCNNNNNNNGC	3 cut(s)	464, 914, 951
NcoI	CCATGG	1 cut(s)	120
NdeII	GATC	2 cut(s)	190, 731
NlaIII	CATG	7 cut(s)	124, 207, 331, 404, 871, 898, 958
NlaIV	GGNNCC	1 cut(s)	844
NmuCI	GTSAC	1 cut(s)	806
NsiI	ATGCAT	1 cut(s)	869
NspI	RCATGY	2 cut(s)	331, 871
PaeI	GCATGC	2 cut(s)	331, 871
PceI	AGGCCT	1 cut(s)	917
PctI	GAATGC	2 cut(s)	132, 163
PfeI	GAWTC	1 cut(s)	172
PfoI	TCCNGGA	1 cut(s)	995
PkrI	GCNGC	7 cut(s)	380, 457, 469, 727, 859, 885, 937
PleI	GAGTC	1 cut(s)	803
PpsI	GAGTC	1 cut(s)	803
PshAI	GACNNNNGTC	1 cut(s)	813
PshBI	ATTAAT	1 cut(s)	948
Psp6I	CCWGG	3 cut(s)	100, 930, 995
PspFI	CCCAGC	1 cut(s)	21
PspGI	CCWGG	3 cut(s)	100, 930, 995
PspN4I	GGNNCC	1 cut(s)	844
PstI	CTGCAG	1 cut(s)	469
RsaI	GTAC	3 cut(s)	405, 594, 801
RsaNI	GTAC	3 cut(s)	404, 593, 800
SaqAI	TTAA	2 cut(s)	444, 948
SatI	GCNGC	7 cut(s)	379, 456, 468, 726, 858, 884, 936
Sau3AI	GATC	2 cut(s)	190, 731
ScaI	AGTACT	1 cut(s)	801
SchI	GAGTC	1 cut(s)	803
ScrFI	CCNGG	3 cut(s)	102, 932, 997
SduI	GDGCHC	1 cut(s)	273
SetI	ASST	9 cut(s)	27, 246, 262, 368, 472, 582, 730, 786, 894
SfcI	CTRYAG	1 cut(s)	465
SphI	GCATGC	2 cut(s)	331, 871
Sse9I	AATT	7 cut(s)	355, 415, 445, 506, 602, 608, 831
SseBI	AGGCCT	1 cut(s)	917
SsiI	CCGC	2 cut(s)	378, 883
SspMI	CTAG	2 cut(s)	257, 785
StuI	AGGCCT	1 cut(s)	917
StyD4I	CCNGG	3 cut(s)	100, 930, 995
StyI	CCWWGG	1 cut(s)	120
TaaI	ACNGT	1 cut(s)	804
TaiI	ACGT	1 cut(s)	246
TaqI	TCGA	4 cut(s)	691, 730, 817, 902
TasI	AATT	7 cut(s)	355, 415, 445, 506, 602, 608, 831
TatI	WGTACW	3 cut(s)	403, 592, 799
TauI	GCSGC	2 cut(s)	381, 886
TfiI	GAWTC	1 cut(s)	172
Tru1I	TTAA	2 cut(s)	444, 948
Tru9I	TTAA	2 cut(s)	444, 948
TscAI	CASTG	2 cut(s)	112, 502
TseFI	GTSAC	1 cut(s)	806
TseI	GCWGC	5 cut(s)	455, 467, 725, 857, 935
Tsp45I	GTSAC	1 cut(s)	806
TspDTI	ATGAA	4 cut(s)	77, 267, 389, 794
TspRI	CASTG	2 cut(s)	112, 502
VneI	GTGCAC	1 cut(s)	269
VspI	ATTAAT	1 cut(s)	948
XceI	RCATGY	2 cut(s)	331, 871
XspI	CTAG	2 cut(s)	257, 785
ZrmI	AGTACT	1 cut(s)	801
Zsp2I	ATGCAT	1 cut(s)	869

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.