Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009027

Physical Location & Seq

Genomic Coordinates Forward (+)

17567126 .. 17569394

Gene Structure 2269 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G47640.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGGTATCGAAAACTCCTTCTACATCGTCTGATGAAGCAAATGCTACTGCAGATGAAAGATGTAGAAAAGGTAAAGTACCGAAAAGGATCAACAAGGCCGTTCGTGAGAGGCTTAAGCGTGAGCATTTGAATGAGCTTTTCATTGAATTAGCCGATACTCTTGAACTGAATCAACAGAACAGTGGGAAAGCTTCTATACTATGCGAAGCTACTCGATTCTTGAAGGACGTGTTTGGTCAAATTGAGTCTCTTAGAAAGGAGCATGCTTCTCTCCTATCTGAATCTAGCTATGTAACCACAGAGAAGAATGAGCTCAAGGAAGAAACATCAGTGCTTGAGACTGAGATTTCGAAACTACAAAACGAGATTGAAGCTAGAGCGAATCAGTCGAAACCTGACTTGAACACCTCTCCTGCACCCGAGTACCATCATCATCATTATCAACAACAACATCCTGAACGTGTATCTCAGTTCCCAGGACTTCCCATTTTCCAAGGCCCCGGCTTTCAACAATCTGCTACAACTCTTCATCCTCCTGCAACAGTTCTTGTCCTTCCAATACAACCTGATCCCCAGACACAAGATATCTCAGAAATGACTCAAGCGCAGCAGCCTTTGATGTTTAATAGCTCAAATGTGAGTAAGCCATGTCCAAGGTATGCTAGCGCGGCTGACTCGTGGTCTTCTCGGCTACTTGGAGAGCGGCTGAAAGCCAGTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006873 GO:0006875 GO:0006879 GO:0006950 GO:0007154 GO:0008150 GO:0009267 GO:0009605 GO:0009889 GO:0009987 GO:0009991 GO:0010106 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019725 GO:0030003 GO:0031323 GO:0031326 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0042592 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046916 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0055065 GO:0055072 GO:0055076 GO:0055080 GO:0055082 GO:0060255 GO:0065007 GO:0065008 GO:0071496 GO:0080090 GO:0098771 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

240

Amino Acids

26.94

Weight (kDa)

6.1

Isoelectric Point (pI)

51.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bHLH_IRO3	PF23177	24 - 102	1.8e-23	Iron-related transcription factor 3 bHLH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009027)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47640 AT3G47640 AT3G47640
fragaria_vesca	FvH4_5g15171 FvH4_5g15171 FvH4_5g15171
malus_domestica	MD06G1191600.v1.1 MD14G1198000.v1.1
prunus_persica	Prupe.5G190100_v2.0.a1
pyrus_communis	pycom06g16970 pycom14g16440
rosa_chinensis	RchiOBHm_Chr7g0181001
rosa_multiflora	Rmu_co8331139.1_g000001
rosa_roxburghii	Rroxscaffold_3G00272350
rosa_rugosa	Rorug06G0438300 Rorug06G0438300 Rorug06G0438400
rosa_samantha	Rh7AG039600 Rh7BG039000 Rh7CG040800 Rh7DG039200
rosa_wichuraiana	Rw7G003260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	703
AccII	CGCG	1 cut(s)	668
AciI	CCGC	2 cut(s)	668, 703
AclWI	GGATC	2 cut(s)	95, 563
AfaI	GTAC	2 cut(s)	78, 425
AflII	CTTAAG	1 cut(s)	113
AflIII	ACRYGT	2 cut(s)	228, 460
AgsI	TTSAA	7 cut(s)	130, 146, 164, 223, 371, 403, 509
AhdI	GACNNNNNGTC	1 cut(s)	679
AjiI	CACGTC	1 cut(s)	229
AjnI	CCWGG	1 cut(s)	475
AluBI	AGCT	7 cut(s)	136, 191, 209, 288, 313, 374, 630
AluI	AGCT	7 cut(s)	136, 191, 209, 288, 313, 374, 630
Alw21I	GWGCWC	1 cut(s)	315
Alw26I	GTCTC	2 cut(s)	252, 332
AlwI	GGATC	2 cut(s)	95, 563
Ama87I	CYCGRG	1 cut(s)	419
AoxI	GGCC	2 cut(s)	96, 496
ApeKI	GCWGC	2 cut(s)	607, 610
ArsI	GACNNNNNNTTYG	2 cut(s)	331, 363
AspLEI	GCGC	2 cut(s)	607, 668
AspS9I	GGNCC	1 cut(s)	497
AsuC2I	CCSGG	1 cut(s)	501
AsuII	TTCGAA	1 cut(s)	350
AsuNHI	GCTAGC	1 cut(s)	662
AvaI	CYCGRG	1 cut(s)	419
BaeI	ACNNNNGTAYC	2 cut(s)	407, 440
BanII	GRGCYC	1 cut(s)	315
BauI	CACGAG	1 cut(s)	676
BbsI	GAAGAC	1 cut(s)	675
Bbv12I	GWGCWC	1 cut(s)	315
BbvI	GCAGC	2 cut(s)	619, 622
BccI	CCATC	1 cut(s)	435
BceAI	ACGGC	1 cut(s)	83
BciT130I	CCWGG	1 cut(s)	477
BcnI	CCSGG	1 cut(s)	501
BcoDI	GTCTC	2 cut(s)	252, 332
BfaI	CTAG	3 cut(s)	285, 375, 663
BfmI	CTRYAG	1 cut(s)	48
BfrI	CTTAAG	1 cut(s)	113
BisI	GCNGC	4 cut(s)	608, 611, 669, 704
BlsI	GCNGC	4 cut(s)	609, 612, 670, 705
Bme1390I	CCNGG	2 cut(s)	477, 501
BmeRI	GACNNNNNGTC	1 cut(s)	679
BmeT110I	CYCGRG	1 cut(s)	419
BmgBI	CACGTC	1 cut(s)	229
BmgT120I	GGNCC	1 cut(s)	497
BmiI	GGNNCC	1 cut(s)	499
BmrFI	CCNGG	2 cut(s)	477, 501
BmtI	GCTAGC	1 cut(s)	666
BpiI	GAAGAC	1 cut(s)	675
Bpu14I	TTCGAA	1 cut(s)	350
BpuEI	CTTGAG	3 cut(s)	299, 356, 585
BpuMI	CCSGG	1 cut(s)	501
BsaJI	CCNNGG	4 cut(s)	475, 493, 499, 653
Bse1I	ACTGG	1 cut(s)	714
BseBI	CCWGG	1 cut(s)	477
BseDI	CCNNGG	4 cut(s)	475, 493, 499, 653
BseGI	GGATG	2 cut(s)	451, 529
BseMII	CTCAG	3 cut(s)	333, 482, 603
BseNI	ACTGG	1 cut(s)	714
BseXI	GCAGC	2 cut(s)	619, 622
BsgI	GTGCAG	1 cut(s)	399
Bsh1236I	CGCG	1 cut(s)	668
BshFI	GGCC	2 cut(s)	98, 498
BsiHKAI	GWGCWC	1 cut(s)	315
BsiHKCI	CYCGRG	1 cut(s)	419
BsiSI	CCGG	1 cut(s)	501
BsmAI	GTCTC	2 cut(s)	252, 332
BsnI	GGCC	2 cut(s)	98, 498
BsoBI	CYCGRG	1 cut(s)	419
Bsp119I	TTCGAA	1 cut(s)	350
Bsp1286I	GDGCHC	1 cut(s)	315
Bsp143I	GATC	2 cut(s)	87, 568
BspACI	CCGC	2 cut(s)	668, 703
BspANI	GGCC	2 cut(s)	98, 498
BspCNI	CTCAG	3 cut(s)	334, 481, 602
BspFNI	CGCG	1 cut(s)	668
BspLI	GGNNCC	1 cut(s)	499
BspMAI	CTGCAG	1 cut(s)	52
BspOI	GCTAGC	1 cut(s)	666
BspPI	GGATC	2 cut(s)	95, 563
BspT104I	TTCGAA	1 cut(s)	350
BspTI	CTTAAG	1 cut(s)	113
BsrBI	CCGCTC	1 cut(s)	703
BsrI	ACTGG	1 cut(s)	714
BssECI	CCNNGG	4 cut(s)	475, 493, 499, 653
BssMI	GATC	2 cut(s)	87, 568
BssSI	CACGAG	1 cut(s)	676
BssT1I	CCWWGG	2 cut(s)	493, 653
Bst2BI	CACGAG	1 cut(s)	676
Bst2UI	CCWGG	1 cut(s)	477
Bst4CI	ACNGT	2 cut(s)	182, 544
Bst6I	CTCTTC	1 cut(s)	531
BstAFI	CTTAAG	1 cut(s)	113
BstBI	TTCGAA	1 cut(s)	350
BstC8I	GCNNGC	2 cut(s)	264, 664
BstDEI	CTNAG	4 cut(s)	251, 342, 468, 589
BstF5I	GGATG	2 cut(s)	451, 529
BstFNI	CGCG	1 cut(s)	668
BstHHI	GCGC	2 cut(s)	607, 668
BstKTI	GATC	2 cut(s)	90, 571
BstMAI	GTCTC	2 cut(s)	252, 332
BstMBI	GATC	2 cut(s)	87, 568
BstMWI	GCNNNNNNNGC	1 cut(s)	668
BstNI	CCWGG	1 cut(s)	477
BstNSI	RCATGY	1 cut(s)	266
BstSCI	CCNGG	2 cut(s)	475, 499
BstSFI	CTRYAG	1 cut(s)	48
BstUI	CGCG	1 cut(s)	668
BstV1I	GCAGC	2 cut(s)	619, 622
BstV2I	GAAGAC	1 cut(s)	675
BsuRI	GGCC	2 cut(s)	98, 498
BtrI	CACGTC	1 cut(s)	229
BtsCI	GGATG	2 cut(s)	451, 529
BtsIMutI	CAGTG	3 cut(s)	187, 336, 721
Cac8I	GCNNGC	2 cut(s)	264, 664
CfoI	GCGC	2 cut(s)	607, 668
Cfr13I	GGNCC	1 cut(s)	497
Csp6I	GTAC	2 cut(s)	77, 424
CviAII	CATG	2 cut(s)	263, 648
CviQI	GTAC	2 cut(s)	77, 424
DdeI	CTNAG	4 cut(s)	251, 342, 468, 589
DpnI	GATC	2 cut(s)	89, 570
DpnII	GATC	2 cut(s)	87, 568
DriI	GACNNNNNGTC	1 cut(s)	679
Eam1104I	CTCTTC	1 cut(s)	531
Eam1105I	GACNNNNNGTC	1 cut(s)	679
EarI	CTCTTC	1 cut(s)	531
Ecl136II	GAGCTC	1 cut(s)	313
Eco130I	CCWWGG	2 cut(s)	493, 653
Eco24I	GRGCYC	1 cut(s)	315
Eco32I	GATATC	1 cut(s)	586
Eco53kI	GAGCTC	1 cut(s)	313
Eco88I	CYCGRG	1 cut(s)	419
EcoICRI	GAGCTC	1 cut(s)	313
EcoO109I	RGGNCCY	1 cut(s)	497
EcoRII	CCWGG	1 cut(s)	475
EcoRV	GATATC	1 cut(s)	586
EcoT14I	CCWWGG	2 cut(s)	493, 653
EcoT38I	GRGCYC	1 cut(s)	315
ErhI	CCWWGG	2 cut(s)	493, 653
FaeI	CATG	2 cut(s)	266, 651
FaiI	YATR	6 cut(s)	197, 202, 264, 291, 649, 660
FatI	CATG	2 cut(s)	262, 647
Fnu4HI	GCNGC	4 cut(s)	608, 611, 669, 704
FokI	GGATG	2 cut(s)	438, 516
FriOI	GRGCYC	1 cut(s)	315
Fsp4HI	GCNGC	4 cut(s)	608, 611, 669, 704
FspBI	CTAG	3 cut(s)	285, 375, 663
GlaI	GCGC	2 cut(s)	606, 667
GluI	GCNGC	4 cut(s)	608, 611, 669, 704
HaeIII	GGCC	2 cut(s)	98, 498
HapII	CCGG	1 cut(s)	501
HhaI	GCGC	2 cut(s)	607, 668
Hin1II	CATG	2 cut(s)	266, 651
Hin6I	GCGC	2 cut(s)	605, 666
HinP1I	GCGC	2 cut(s)	605, 666
HindIII	AAGCTT	1 cut(s)	189
HinfI	GANTC	7 cut(s)	169, 216, 245, 281, 382, 598, 674
HpaII	CCGG	1 cut(s)	501
Hpy188I	TCNGA	3 cut(s)	31, 280, 592
Hpy188III	TCNNGA	4 cut(s)	104, 161, 220, 455
HpyAV	CCTTC	3 cut(s)	27, 217, 563
HpyCH4III	ACNGT	2 cut(s)	182, 544
HpyCH4IV	ACGT	2 cut(s)	228, 460
HpyCH4V	TGCA	3 cut(s)	50, 416, 539
HpyF10VI	GCNNNNNNNGC	1 cut(s)	668
HpyF3I	CTNAG	4 cut(s)	251, 342, 468, 589
HpySE526I	ACGT	2 cut(s)	228, 460
Hsp92II	CATG	2 cut(s)	266, 651
HspAI	GCGC	2 cut(s)	605, 666
Kzo9I	GATC	2 cut(s)	87, 568
LmnI	GCTCC	1 cut(s)	259
LpnPI	CCDG	9 cut(s)	408, 426, 462, 468, 489, 514, 549, 579, 587
Lsp1109I	GCAGC	2 cut(s)	619, 622
MaeI	CTAG	3 cut(s)	285, 375, 663
MaeII	ACGT	2 cut(s)	228, 460
MaeIII	GTNAC	1 cut(s)	292
MalI	GATC	2 cut(s)	89, 570
MbiI	CCGCTC	1 cut(s)	703
MboI	GATC	2 cut(s)	87, 568
MboII	GAAGA	4 cut(s)	316, 332, 518, 675
MhlI	GDGCHC	1 cut(s)	315
MluCI	AATT	2 cut(s)	146, 240
MlyI	GAGTC	3 cut(s)	254, 592, 668
MnlI	CCTC	3 cut(s)	102, 418, 543
MseI	TTAA	2 cut(s)	114, 624
MslI	CAYNNNNRTG	1 cut(s)	129
MspCI	CTTAAG	1 cut(s)	113
MspI	CCGG	1 cut(s)	501
MspR9I	CCNGG	2 cut(s)	477, 501
MvaI	CCWGG	1 cut(s)	477
MvnI	CGCG	1 cut(s)	668
MwoI	GCNNNNNNNGC	1 cut(s)	668
NciI	CCSGG	1 cut(s)	501
NdeII	GATC	2 cut(s)	87, 568
NheI	GCTAGC	1 cut(s)	662
NlaIII	CATG	2 cut(s)	266, 651
NlaIV	GGNNCC	1 cut(s)	499
NmeAIII	GCCGAG	1 cut(s)	667
NspI	RCATGY	1 cut(s)	266
NspV	TTCGAA	1 cut(s)	350
PaeI	GCATGC	1 cut(s)	266
PfeI	GAWTC	4 cut(s)	169, 216, 281, 382
PkrI	GCNGC	4 cut(s)	609, 612, 670, 705
PleI	GAGTC	3 cut(s)	253, 592, 668
PpsI	GAGTC	3 cut(s)	253, 592, 668
Psp124BI	GAGCTC	1 cut(s)	315
Psp6I	CCWGG	1 cut(s)	475
PspGI	CCWGG	1 cut(s)	475
PspN4I	GGNNCC	1 cut(s)	499
PspPI	GGNCC	1 cut(s)	497
PstI	CTGCAG	1 cut(s)	52
RsaI	GTAC	2 cut(s)	78, 425
RsaNI	GTAC	2 cut(s)	77, 424
RseI	CAYNNNNRTG	1 cut(s)	129
SacI	GAGCTC	1 cut(s)	315
SaqAI	TTAA	2 cut(s)	114, 624
SatI	GCNGC	4 cut(s)	608, 611, 669, 704
Sau3AI	GATC	2 cut(s)	87, 568
Sau96I	GGNCC	1 cut(s)	497
SchI	GAGTC	3 cut(s)	254, 592, 668
ScrFI	CCNGG	2 cut(s)	477, 501
SduI	GDGCHC	1 cut(s)	315
SfcI	CTRYAG	1 cut(s)	48
SfuI	TTCGAA	1 cut(s)	350
SmiMI	CAYNNNNRTG	1 cut(s)	129
SmlI	CTYRAG	4 cut(s)	113, 314, 335, 600
SmoI	CTYRAG	4 cut(s)	113, 314, 335, 600
SphI	GCATGC	1 cut(s)	266
Sse9I	AATT	2 cut(s)	146, 240
SsiI	CCGC	2 cut(s)	668, 703
SspMI	CTAG	3 cut(s)	285, 375, 663
SstI	GAGCTC	1 cut(s)	315
StyD4I	CCNGG	2 cut(s)	475, 499
StyI	CCWWGG	2 cut(s)	493, 653
TaaI	ACNGT	2 cut(s)	182, 544
TaiI	ACGT	2 cut(s)	231, 463
TaqI	TCGA	4 cut(s)	8, 214, 350, 389
TasI	AATT	2 cut(s)	146, 240
TauI	GCSGC	2 cut(s)	671, 706
TfiI	GAWTC	4 cut(s)	169, 216, 281, 382
Tru1I	TTAA	2 cut(s)	114, 624
Tru9I	TTAA	2 cut(s)	114, 624
TscAI	CASTG	3 cut(s)	187, 336, 721
TseI	GCWGC	2 cut(s)	607, 610
TspDTI	ATGAA	4 cut(s)	48, 69, 130, 518
TspRI	CASTG	3 cut(s)	187, 336, 721
Vha464I	CTTAAG	1 cut(s)	113
XceI	RCATGY	1 cut(s)	266
XspI	CTAG	3 cut(s)	285, 375, 663

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.