Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0009027

Physical Location & Seq

Genomic Coordinates Reverse (-)

18715157 .. 18717097

Gene Structure 1941 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g16440.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGATCATGGGTTCACCGGATCCTGTGCCGGCAGCTGACGAGGGTAATGTGGCAACGGAGGCATCAGTGCGCCGGGCTTGTCCTGGAATAAAGAAACAGGGGAAAATTCCTAAGAGAATCCGCAAGTCTGAGAGGGAGAGACGGAAGCGTGAGCAGTTTAACGAGCTTTTTCTTGAGCTGGCTGATGCCCTCGAACTGAATGAGCAGAACAGTGGAAAGGCCTCTATAGTAAGTGAAGCTACTCGACTGTTAAAGGACTTGTGTGGTCAGATTGAATGCTTACAGAAGGAAAATGCATCCCTGTTGTCTGAATCGAACTATATGACTCTCGAGAAGAATGAGCTGAGAGACGATAACTCTGCCTTAGAAACTCAGATTGAGAAATTGCAAAGTGAGATACAAGAGAGGGTGGCACAGTCTAAACCGGACCTGAATGCACCACCTCATGCAGAATTGAGACCGGAAGTTCCCTCCCATTTTACCGGAAATTGCATCAGTTTGCCCACTCAAGAACCCAGCTTGCAGCAAGCGCCCGCTGTCTTTGTTATGCCCCTCTGCCCCGATCTCCAAGCTTACCCACTGCCGGATGCCACCCACCTCACATCTAACACCACCTCACATGTGAGCAAACCGCATGCTAGGTATCCAACCTCGGTGGATTCTTGGCCGTCCCAACTTCTCGGCGAGAATACAACCGCAGGCAAAGGATTTCGACAAAGTGGTGAAAACGACCCTAGTAATATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006873 GO:0006875 GO:0006879 GO:0006950 GO:0007154 GO:0008150 GO:0009267 GO:0009605 GO:0009889 GO:0009987 GO:0009991 GO:0010106 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019725 GO:0030003 GO:0031323 GO:0031326 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0042592 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046916 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0055065 GO:0055072 GO:0055076 GO:0055080 GO:0055082 GO:0060255 GO:0065007 GO:0065008 GO:0071496 GO:0080090 GO:0098771 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

249

Amino Acids

27.4

Weight (kDa)

5.38

Isoelectric Point (pI)

59.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009027)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47640 AT3G47640 AT3G47640
fragaria_vesca	FvH4_5g15171 FvH4_5g15171 FvH4_5g15171
malus_domestica	MD06G1191600.v1.1 MD14G1198000.v1.1
prunus_persica	Prupe.5G190100_v2.0.a1
pyrus_communis	pycom06g16970 pycom14g16440
rosa_chinensis	RchiOBHm_Chr7g0181001
rosa_multiflora	Rmu_co8331139.1_g000001
rosa_roxburghii	Rroxscaffold_3G00272350
rosa_rugosa	Rorug06G0438300 Rorug06G0438300 Rorug06G0438400
rosa_samantha	Rh7AG039600 Rh7BG039000 Rh7CG040800 Rh7DG039200
rosa_wichuraiana	Rw7G003260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	121, 534, 632, 696
AclWI	GGATC	2 cut(s)	14, 27
AcoI	YGGCCR	1 cut(s)	665
AcsI	RAATTY	1 cut(s)	105
AfiI	CCNNNNNNNGG	1 cut(s)	583
AflIII	ACRYGT	1 cut(s)	619
AgsI	TTSAA	1 cut(s)	275
AjnI	CCWGG	1 cut(s)	82
AluBI	AGCT	7 cut(s)	35, 166, 178, 239, 343, 519, 572
AluI	AGCT	7 cut(s)	35, 166, 178, 239, 343, 519, 572
Alw26I	GTCTC	3 cut(s)	133, 342, 451
AlwI	GGATC	2 cut(s)	14, 27
Ama87I	CYCGRG	1 cut(s)	329
AoxI	GGCC	2 cut(s)	219, 665
ApeKI	GCWGC	2 cut(s)	32, 523
ApoI	RAATTY	1 cut(s)	105
AspLEI	GCGC	2 cut(s)	72, 532
AspS9I	GGNCC	1 cut(s)	427
AsuC2I	CCSGG	1 cut(s)	74
AsuHPI	GGTGA	2 cut(s)	6, 734
AvaI	CYCGRG	1 cut(s)	329
AvaII	GGWCC	1 cut(s)	427
BamHI	GGATCC	1 cut(s)	19
BbvI	GCAGC	2 cut(s)	44, 535
BceAI	ACGGC	1 cut(s)	652
BcgI	CGANNNNNNTGC	2 cut(s)	341, 375
BciT130I	CCWGG	1 cut(s)	84
BciVI	GTATCC	1 cut(s)	654
BclI	TGATCA	1 cut(s)	3
BcnI	CCSGG	1 cut(s)	74
BcoDI	GTCTC	3 cut(s)	133, 342, 451
BfaI	CTAG	2 cut(s)	639, 735
BfmI	CTRYAG	1 cut(s)	225
BfoI	RGCGCY	1 cut(s)	533
BfuI	GTATCC	1 cut(s)	654
BisI	GCNGC	2 cut(s)	33, 524
BlsI	GCNGC	2 cut(s)	34, 525
Bme1390I	CCNGG	2 cut(s)	74, 84
Bme18I	GGWCC	1 cut(s)	427
BmeT110I	CYCGRG	1 cut(s)	329
BmgT120I	GGNCC	1 cut(s)	427
BmiI	GGNNCC	1 cut(s)	21
BmrFI	CCNGG	2 cut(s)	74, 84
BmsI	GCATC	5 cut(s)	71, 175, 305, 501, 577
BpuEI	CTTGAG	2 cut(s)	194, 492
BpuMI	CCSGG	1 cut(s)	74
BsaI	GGTCTC	1 cut(s)	451
BsaJI	CCNNGG	1 cut(s)	651
BsaWI	WCCGGW	4 cut(s)	16, 424, 460, 482
Bsc4I	CCNNNNNNNGG	1 cut(s)	583
Bse118I	RCCGGY	1 cut(s)	28
BseBI	CCWGG	1 cut(s)	84
BseDI	CCNNGG	1 cut(s)	651
BseGI	GGATG	2 cut(s)	296, 592
BseLI	CCNNNNNNNGG	1 cut(s)	583
BseMII	CTCAG	3 cut(s)	120, 335, 386
BseXI	GCAGC	2 cut(s)	44, 535
BseYI	CCCAGC	1 cut(s)	515
BshFI	GGCC	2 cut(s)	221, 667
BsiHKCI	CYCGRG	1 cut(s)	329
BsiSI	CCGG	7 cut(s)	17, 29, 73, 425, 461, 483, 584
BslFI	GGGAC	1 cut(s)	655
BslI	CCNNNNNNNGG	1 cut(s)	583
BsmAI	GTCTC	3 cut(s)	133, 342, 451
BsmBI	CGTCTC	2 cut(s)	133, 342
BsmFI	GGGAC	1 cut(s)	655
BsmI	GAATGC	2 cut(s)	281, 439
BsnI	GGCC	2 cut(s)	221, 667
Bso31I	GGTCTC	1 cut(s)	451
BsoBI	CYCGRG	1 cut(s)	329
Bsp143I	GATC	3 cut(s)	3, 19, 562
BspACI	CCGC	4 cut(s)	121, 534, 632, 696
BspANI	GGCC	2 cut(s)	221, 667
BspCNI	CTCAG	3 cut(s)	121, 336, 385
BspLI	GGNNCC	1 cut(s)	21
BspPI	GGATC	2 cut(s)	14, 27
BspTNI	GGTCTC	1 cut(s)	451
BsrFI	RCCGGY	1 cut(s)	28
BssAI	RCCGGY	1 cut(s)	28
BssECI	CCNNGG	1 cut(s)	651
BssMI	GATC	3 cut(s)	3, 19, 562
Bst2UI	CCWGG	1 cut(s)	84
Bst4CI	ACNGT	3 cut(s)	212, 249, 417
BstC8I	GCNNGC	7 cut(s)	30, 180, 521, 528, 534, 636, 700
BstDEI	CTNAG	5 cut(s)	111, 129, 344, 364, 372
BstF5I	GGATG	2 cut(s)	296, 592
BstH2I	RGCGCY	1 cut(s)	533
BstHHI	GCGC	2 cut(s)	72, 532
BstKTI	GATC	3 cut(s)	6, 22, 565
BstMAI	GTCTC	3 cut(s)	133, 342, 451
BstMBI	GATC	3 cut(s)	3, 19, 562
BstMWI	GCNNNNNNNGC	2 cut(s)	59, 529
BstNI	CCWGG	1 cut(s)	84
BstNSI	RCATGY	2 cut(s)	623, 638
BstSCI	CCNGG	2 cut(s)	72, 82
BstSFI	CTRYAG	1 cut(s)	225
BstV1I	GCAGC	2 cut(s)	44, 535
BstX2I	RGATCY	1 cut(s)	19
BstYI	RGATCY	1 cut(s)	19
BsuI	GTATCC	1 cut(s)	654
BsuRI	GGCC	2 cut(s)	221, 667
BtsCI	GGATG	2 cut(s)	296, 592
BtsI	GCAGTG	1 cut(s)	578
BtsIMutI	CAGTG	3 cut(s)	72, 217, 578
Cac8I	GCNNGC	7 cut(s)	30, 180, 521, 528, 534, 636, 700
CfoI	GCGC	2 cut(s)	72, 532
Cfr10I	RCCGGY	1 cut(s)	28
Cfr13I	GGNCC	1 cut(s)	427
CspCI	CAANNNNNGTGG	2 cut(s)	636, 671
CviAII	CATG	4 cut(s)	7, 446, 620, 635
DdeI	CTNAG	5 cut(s)	111, 129, 344, 364, 372
DpnI	GATC	3 cut(s)	5, 21, 564
DpnII	GATC	3 cut(s)	3, 19, 562
EaeI	YGGCCR	1 cut(s)	665
Eco147I	AGGCCT	1 cut(s)	221
Eco31I	GGTCTC	1 cut(s)	451
Eco47I	GGWCC	1 cut(s)	427
Eco88I	CYCGRG	1 cut(s)	329
EcoRII	CCWGG	1 cut(s)	82
EcoT22I	ATGCAT	1 cut(s)	298
Esp3I	CGTCTC	2 cut(s)	133, 342
FaeI	CATG	4 cut(s)	10, 449, 623, 638
FaiI	YATR	9 cut(s)	8, 227, 321, 323, 447, 548, 621, 636, 743
FaqI	GGGAC	1 cut(s)	655
FatI	CATG	4 cut(s)	6, 445, 619, 634
FauI	CCCGC	1 cut(s)	541
FbaI	TGATCA	1 cut(s)	3
Fnu4HI	GCNGC	2 cut(s)	33, 524
FokI	GGATG	2 cut(s)	283, 599
Fsp4HI	GCNGC	2 cut(s)	33, 524
FspBI	CTAG	2 cut(s)	639, 735
GlaI	GCGC	2 cut(s)	71, 531
GluI	GCNGC	2 cut(s)	33, 524
GsaI	CCCAGC	1 cut(s)	519
HaeII	RGCGCY	1 cut(s)	533
HaeIII	GGCC	2 cut(s)	221, 667
HapII	CCGG	7 cut(s)	17, 29, 73, 425, 461, 483, 584
HhaI	GCGC	2 cut(s)	72, 532
Hin1II	CATG	4 cut(s)	10, 449, 623, 638
Hin6I	GCGC	2 cut(s)	70, 530
HinP1I	GCGC	2 cut(s)	70, 530
HindIII	AAGCTT	1 cut(s)	570
HinfI	GANTC	4 cut(s)	117, 311, 325, 659
HpaII	CCGG	7 cut(s)	17, 29, 73, 425, 461, 483, 584
HphI	GGTGA	2 cut(s)	6, 734
Hpy166II	GTNNAC	1 cut(s)	14
Hpy188I	TCNGA	4 cut(s)	130, 270, 310, 375
Hpy188III	TCNNGA	4 cut(s)	173, 329, 331, 509
Hpy8I	GTNNAC	1 cut(s)	14
HpyAV	CCTTC	1 cut(s)	280
HpyCH4III	ACNGT	3 cut(s)	212, 249, 417
HpyCH4V	TGCA	6 cut(s)	296, 388, 437, 449, 492, 523
HpyF10VI	GCNNNNNNNGC	2 cut(s)	59, 529
HpyF3I	CTNAG	5 cut(s)	111, 129, 344, 364, 372
Hsp92II	CATG	4 cut(s)	10, 449, 623, 638
HspAI	GCGC	2 cut(s)	70, 530
KroI	GCCGGC	1 cut(s)	28
KroNI	GCCGGC	1 cut(s)	30
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	3 cut(s)	3, 19, 562
Lsp1109I	GCAGC	2 cut(s)	44, 535
LweI	GCATC	5 cut(s)	71, 175, 305, 501, 577
MaeI	CTAG	2 cut(s)	639, 735
MalI	GATC	3 cut(s)	5, 21, 564
MboI	GATC	3 cut(s)	3, 19, 562
MboII	GAAGA	1 cut(s)	346
MflI	RGATCY	1 cut(s)	19
MluCI	AATT	4 cut(s)	105, 383, 452, 487
MlyI	GAGTC	1 cut(s)	319
MmeI	TCCRAC	1 cut(s)	671
Mph1103I	ATGCAT	1 cut(s)	298
MroNI	GCCGGC	1 cut(s)	28
MseI	TTAA	2 cut(s)	159, 251
MspA1I	CMGCKG	2 cut(s)	35, 536
MspI	CCGG	7 cut(s)	17, 29, 73, 425, 461, 483, 584
MspR9I	CCNGG	2 cut(s)	74, 84
Mva1269I	GAATGC	2 cut(s)	281, 439
MvaI	CCWGG	1 cut(s)	84
MwoI	GCNNNNNNNGC	2 cut(s)	59, 529
NaeI	GCCGGC	1 cut(s)	30
NciI	CCSGG	1 cut(s)	74
NdeII	GATC	3 cut(s)	3, 19, 562
NgoMIV	GCCGGC	1 cut(s)	28
NlaIII	CATG	4 cut(s)	10, 449, 623, 638
NlaIV	GGNNCC	1 cut(s)	21
NmeAIII	GCCGAG	1 cut(s)	660
NsiI	ATGCAT	1 cut(s)	298
NspI	RCATGY	2 cut(s)	623, 638
PaeI	GCATGC	1 cut(s)	638
PaeR7I	CTCGAG	1 cut(s)	329
PceI	AGGCCT	1 cut(s)	221
PciI	ACATGT	1 cut(s)	619
PctI	GAATGC	2 cut(s)	281, 439
PdiI	GCCGGC	1 cut(s)	30
PfeI	GAWTC	3 cut(s)	117, 311, 659
PfoI	TCCNGGA	1 cut(s)	82
PkrI	GCNGC	2 cut(s)	34, 525
PleI	GAGTC	1 cut(s)	319
PpsI	GAGTC	1 cut(s)	319
PscI	ACATGT	1 cut(s)	619
Psp6I	CCWGG	1 cut(s)	82
PspFI	CCCAGC	1 cut(s)	515
PspGI	CCWGG	1 cut(s)	82
PspN4I	GGNNCC	1 cut(s)	21
PspPI	GGNCC	1 cut(s)	427
PsuI	RGATCY	1 cut(s)	19
PvuII	CAGCTG	1 cut(s)	35
SaqAI	TTAA	2 cut(s)	159, 251
SatI	GCNGC	2 cut(s)	33, 524
Sau3AI	GATC	3 cut(s)	3, 19, 562
Sau96I	GGNCC	1 cut(s)	427
SchI	GAGTC	1 cut(s)	319
ScrFI	CCNGG	2 cut(s)	74, 84
SfaNI	GCATC	5 cut(s)	71, 175, 305, 501, 577
SfcI	CTRYAG	1 cut(s)	225
Sfr274I	CTCGAG	1 cut(s)	329
SinI	GGWCC	1 cut(s)	427
SlaI	CTCGAG	1 cut(s)	329
SmlI	CTYRAG	3 cut(s)	173, 329, 507
SmoI	CTYRAG	3 cut(s)	173, 329, 507
SphI	GCATGC	1 cut(s)	638
Sse9I	AATT	4 cut(s)	105, 383, 452, 487
SseBI	AGGCCT	1 cut(s)	221
SsiI	CCGC	4 cut(s)	121, 534, 632, 696
SspMI	CTAG	2 cut(s)	639, 735
StuI	AGGCCT	1 cut(s)	221
StyD4I	CCNGG	2 cut(s)	72, 82
TaaI	ACNGT	3 cut(s)	212, 249, 417
TaqI	TCGA	5 cut(s)	192, 244, 314, 330, 712
TasI	AATT	4 cut(s)	105, 383, 452, 487
TfiI	GAWTC	3 cut(s)	117, 311, 659
Tru1I	TTAA	2 cut(s)	159, 251
Tru9I	TTAA	2 cut(s)	159, 251
TscAI	CASTG	3 cut(s)	72, 217, 585
TseI	GCWGC	2 cut(s)	32, 523
TspGWI	ACGGA	2 cut(s)	71, 157
TspRI	CASTG	3 cut(s)	72, 217, 585
VpaK11BI	GGWCC	1 cut(s)	427
XapI	RAATTY	1 cut(s)	105
XceI	RCATGY	2 cut(s)	623, 638
XhoI	CTCGAG	1 cut(s)	329
XspI	CTAG	2 cut(s)	639, 735
Zsp2I	ATGCAT	1 cut(s)	298

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.