Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0009027

Physical Location & Seq

Genomic Coordinates Reverse (-)

15593211 .. 15595184

Gene Structure 1974 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G190100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGGGTTCACAGGATCCTGTTCCGGCGGCTGACAAGGCTAATGTAACGGAGGCCTCAGTGCGCGGCGCTTGTTCTGGAAAAAAGATTCAGGGGAAAATTCCTAAGAGAATCCACAAGGCTGAGAGGGAGAAACAGAAGCGTGAGCATTTTAACGAGCTTTTTCTTGAGCTGGCCGATGCTCTTGAATTAAATCAGCAGAACAATGGAAAGGCCTCTATATTGTGTGAAGCTACACGACTGCTAAAAGACTTGATTGGTCAGATTGAGTACTTACAAAAGGAGAATGCATCCTTGTTGTCTGAATCCAACTATATGACCATTGAGAAGAATGAGCTGAGAGAGGATAATTCTGCCTTAGAAACTCAGAATGAGAAATTACACAGTGAAATAGAAGACAAGGTGGTCCAGTCTAAACCGGACCTGAATGCAGCACTCCCTTGTGCAGAATTGAGACCAGAAGTGGCATCCCATTTTACTGGAACTTCCGTCAGTTTGCCCACTCAAGACCCCAGTTTGCAGCAAGCACCTGCTGTCTTTGTCATGCCCCTGTGCCCTGATCTCCAATCCTACCCGCTGCCGGATGCCGCCCAGCTCACATCTAACACTACCTCACATGTGAGTAAACCGCATGCTAGGTATCCAACCTCGGTGGATTCTTGGCCGTCCCAACTTCTCGGTGAGAAACCAACAGCAGGCAAAGAATCTCGACAACTTGGTGACAGTAGCAACATTTGCAGGAGCAGAGAAACCGACCCTGATAACATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006873 GO:0006875 GO:0006879 GO:0006950 GO:0007154 GO:0008150 GO:0009267 GO:0009605 GO:0009889 GO:0009987 GO:0009991 GO:0010106 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019725 GO:0030003 GO:0031323 GO:0031326 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0042592 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046916 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0055065 GO:0055072 GO:0055076 GO:0055080 GO:0055082 GO:0060255 GO:0065007 GO:0065008 GO:0071496 GO:0080090 GO:0098771 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

256

Amino Acids

28.1

Weight (kDa)

5.36

Isoelectric Point (pI)

51.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009027)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47640 AT3G47640 AT3G47640
fragaria_vesca	FvH4_5g15171 FvH4_5g15171 FvH4_5g15171
malus_domestica	MD06G1191600.v1.1 MD14G1198000.v1.1
prunus_persica	Prupe.5G190100_v2.0.a1
pyrus_communis	pycom06g16970 pycom14g16440
rosa_chinensis	RchiOBHm_Chr7g0181001
rosa_multiflora	Rmu_co8331139.1_g000001
rosa_roxburghii	Rroxscaffold_3G00272350
rosa_rugosa	Rorug06G0438300 Rorug06G0438300 Rorug06G0438400
rosa_samantha	Rh7AG039600 Rh7BG039000 Rh7CG040800 Rh7DG039200
rosa_wichuraiana	Rw7G003260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	535
AasI	GACNNNNNNGTC	1 cut(s)	401
Acc36I	ACCTGC	1 cut(s)	535
AccII	CGCG	1 cut(s)	63
AciI	CCGC	5 cut(s)	26, 63, 572, 585, 626
AclWI	GGATC	2 cut(s)	8, 21
AcoI	YGGCCR	2 cut(s)	171, 659
AcsI	RAATTY	1 cut(s)	96
AfaI	GTAC	1 cut(s)	269
AfiI	CCNNNNNNNGG	2 cut(s)	577, 692
AflIII	ACRYGT	2 cut(s)	613, 762
AgsI	TTSAA	1 cut(s)	185
AluBI	AGCT	5 cut(s)	157, 169, 230, 334, 592
AluI	AGCT	5 cut(s)	157, 169, 230, 334, 592
Alw26I	GTCTC	1 cut(s)	445
AlwI	GGATC	2 cut(s)	8, 21
AoxI	GGCC	4 cut(s)	51, 171, 210, 659
ApeKI	GCWGC	3 cut(s)	428, 517, 574
ApoI	RAATTY	1 cut(s)	96
AspLEI	GCGC	2 cut(s)	63, 68
AspS9I	GGNCC	2 cut(s)	403, 418
AsuHPI	GGTGA	2 cut(s)	689, 728
AvaII	GGWCC	2 cut(s)	403, 418
BaeGI	GKGCMC	1 cut(s)	554
BamHI	GGATCC	1 cut(s)	13
BbsI	GAAGAC	1 cut(s)	399
BbvI	GCAGC	3 cut(s)	440, 529, 561
BceAI	ACGGC	1 cut(s)	646
BciVI	GTATCC	1 cut(s)	648
BcoDI	GTCTC	1 cut(s)	445
BfaI	CTAG	1 cut(s)	633
BfoI	RGCGCY	1 cut(s)	69
BfuAI	ACCTGC	1 cut(s)	535
BfuI	GTATCC	1 cut(s)	648
BisI	GCNGC	6 cut(s)	27, 64, 429, 518, 575, 585
BlsI	GCNGC	6 cut(s)	28, 65, 430, 519, 576, 586
BmcAI	AGTACT	1 cut(s)	269
Bme18I	GGWCC	2 cut(s)	403, 418
BmgT120I	GGNCC	2 cut(s)	403, 418
BmiI	GGNNCC	1 cut(s)	15
BmrI	ACTGGG	1 cut(s)	504
BmsI	GCATC	4 cut(s)	166, 296, 473, 571
BmuI	ACTGGG	1 cut(s)	504
BpiI	GAAGAC	1 cut(s)	399
BpuEI	CTTGAG	2 cut(s)	185, 486
BsaI	GGTCTC	1 cut(s)	445
BsaJI	CCNNGG	1 cut(s)	645
BsaWI	WCCGGW	1 cut(s)	415
Bsc4I	CCNNNNNNNGG	2 cut(s)	577, 692
Bse1I	ACTGG	3 cut(s)	406, 481, 510
BseDI	CCNNGG	1 cut(s)	645
BseGI	GGATG	3 cut(s)	287, 464, 586
BseLI	CCNNNNNNNGG	2 cut(s)	577, 692
BseMII	CTCAG	4 cut(s)	69, 111, 326, 377
BseNI	ACTGG	3 cut(s)	406, 481, 510
BseSI	GKGCMC	1 cut(s)	554
BseXI	GCAGC	3 cut(s)	440, 529, 561
BseYI	CCCAGC	1 cut(s)	588
BsgI	GTGCAG	1 cut(s)	462
Bsh1236I	CGCG	1 cut(s)	63
BshFI	GGCC	4 cut(s)	53, 173, 212, 661
BsiSI	CCGG	3 cut(s)	23, 416, 578
BslFI	GGGAC	1 cut(s)	649
BslI	CCNNNNNNNGG	2 cut(s)	577, 692
BsmAI	GTCTC	1 cut(s)	445
BsmFI	GGGAC	1 cut(s)	649
BsmI	GAATGC	2 cut(s)	289, 430
BsnI	GGCC	4 cut(s)	53, 173, 212, 661
Bso31I	GGTCTC	1 cut(s)	445
Bsp1286I	GDGCHC	1 cut(s)	554
Bsp143I	GATC	2 cut(s)	13, 556
BspACI	CCGC	5 cut(s)	26, 63, 572, 585, 626
BspANI	GGCC	4 cut(s)	53, 173, 212, 661
BspCNI	CTCAG	4 cut(s)	68, 112, 327, 376
BspFNI	CGCG	1 cut(s)	63
BspLI	GGNNCC	1 cut(s)	15
BspMI	ACCTGC	1 cut(s)	535
BspPI	GGATC	2 cut(s)	8, 21
BspTNI	GGTCTC	1 cut(s)	445
BsrI	ACTGG	3 cut(s)	406, 481, 510
BssECI	CCNNGG	1 cut(s)	645
BssMI	GATC	2 cut(s)	13, 556
Bst4CI	ACNGT	2 cut(s)	383, 722
BstAPI	GCANNNNNTGC	1 cut(s)	732
BstC8I	GCNNGC	4 cut(s)	171, 522, 630, 694
BstDEI	CTNAG	6 cut(s)	55, 102, 120, 335, 355, 363
BstF5I	GGATG	3 cut(s)	287, 464, 586
BstFNI	CGCG	1 cut(s)	63
BstH2I	RGCGCY	1 cut(s)	69
BstHHI	GCGC	2 cut(s)	63, 68
BstKTI	GATC	2 cut(s)	16, 559
BstMAI	GTCTC	1 cut(s)	445
BstMBI	GATC	2 cut(s)	13, 556
BstMWI	GCNNNNNNNGC	2 cut(s)	35, 732
BstNSI	RCATGY	3 cut(s)	617, 632, 766
BstSLI	GKGCMC	1 cut(s)	554
BstUI	CGCG	1 cut(s)	63
BstV1I	GCAGC	3 cut(s)	440, 529, 561
BstV2I	GAAGAC	1 cut(s)	399
BstX2I	RGATCY	1 cut(s)	13
BstXI	CCANNNNNNTGG	1 cut(s)	476
BstYI	RGATCY	1 cut(s)	13
BsuI	GTATCC	1 cut(s)	648
BsuRI	GGCC	4 cut(s)	53, 173, 212, 661
BtsCI	GGATG	3 cut(s)	287, 464, 586
BtsIMutI	CAGTG	2 cut(s)	63, 388
BveI	ACCTGC	1 cut(s)	535
Cac8I	GCNNGC	4 cut(s)	171, 522, 630, 694
CfoI	GCGC	2 cut(s)	63, 68
Cfr13I	GGNCC	2 cut(s)	403, 418
Csp6I	GTAC	1 cut(s)	268
CspCI	CAANNNNNGTGG	2 cut(s)	630, 665
CviAII	CATG	4 cut(s)	541, 614, 629, 763
CviQI	GTAC	1 cut(s)	268
DdeI	CTNAG	6 cut(s)	55, 102, 120, 335, 355, 363
DpnI	GATC	2 cut(s)	15, 558
DpnII	GATC	2 cut(s)	13, 556
DrdI	GACNNNNNNGTC	1 cut(s)	401
DseDI	GACNNNNNNGTC	1 cut(s)	401
EaeI	YGGCCR	2 cut(s)	171, 659
Eco147I	AGGCCT	2 cut(s)	53, 212
Eco31I	GGTCTC	1 cut(s)	445
Eco47I	GGWCC	2 cut(s)	403, 418
EcoT22I	ATGCAT	1 cut(s)	289
FaeI	CATG	4 cut(s)	544, 617, 632, 766
FaiI	YATR	7 cut(s)	218, 312, 314, 542, 615, 630, 764
FaqI	GGGAC	1 cut(s)	649
FatI	CATG	4 cut(s)	540, 613, 628, 762
FauI	CCCGC	1 cut(s)	579
Fnu4HI	GCNGC	6 cut(s)	27, 64, 429, 518, 575, 585
FokI	GGATG	3 cut(s)	274, 451, 593
Fsp4HI	GCNGC	6 cut(s)	27, 64, 429, 518, 575, 585
FspBI	CTAG	1 cut(s)	633
GlaI	GCGC	2 cut(s)	62, 67
GluI	GCNGC	6 cut(s)	27, 64, 429, 518, 575, 585
GsaI	CCCAGC	1 cut(s)	592
HaeII	RGCGCY	1 cut(s)	69
HaeIII	GGCC	4 cut(s)	53, 173, 212, 661
HapII	CCGG	3 cut(s)	23, 416, 578
HhaI	GCGC	2 cut(s)	63, 68
Hin1II	CATG	4 cut(s)	544, 617, 632, 766
Hin6I	GCGC	2 cut(s)	61, 66
HinP1I	GCGC	2 cut(s)	61, 66
HinfI	GANTC	5 cut(s)	85, 108, 302, 653, 701
HpaII	CCGG	3 cut(s)	23, 416, 578
HphI	GGTGA	2 cut(s)	689, 728
Hpy166II	GTNNAC	2 cut(s)	8, 623
Hpy188I	TCNGA	3 cut(s)	261, 301, 366
Hpy188III	TCNNGA	5 cut(s)	75, 164, 182, 503, 705
Hpy8I	GTNNAC	2 cut(s)	8, 623
HpyCH4III	ACNGT	2 cut(s)	383, 722
HpyCH4V	TGCA	5 cut(s)	287, 428, 443, 517, 735
HpyF10VI	GCNNNNNNNGC	2 cut(s)	35, 732
HpyF3I	CTNAG	6 cut(s)	55, 102, 120, 335, 355, 363
Hsp92II	CATG	4 cut(s)	544, 617, 632, 766
HspAI	GCGC	2 cut(s)	61, 66
Kzo9I	GATC	2 cut(s)	13, 556
LmnI	GCTCC	1 cut(s)	738
Lsp1109I	GCAGC	3 cut(s)	440, 529, 561
LweI	GCATC	4 cut(s)	166, 296, 473, 571
MaeI	CTAG	1 cut(s)	633
MaeIII	GTNAC	2 cut(s)	43, 716
MalI	GATC	2 cut(s)	15, 558
MboI	GATC	2 cut(s)	13, 556
MboII	GAAGA	2 cut(s)	337, 404
MflI	RGATCY	1 cut(s)	13
MhlI	GDGCHC	1 cut(s)	554
MluCI	AATT	5 cut(s)	96, 185, 346, 374, 446
MmeI	TCCRAC	2 cut(s)	330, 665
MnlI	CCTC	7 cut(s)	43, 64, 117, 223, 334, 619, 655
Mph1103I	ATGCAT	1 cut(s)	289
MseI	TTAA	2 cut(s)	150, 188
MspA1I	CMGCKG	1 cut(s)	574
MspI	CCGG	3 cut(s)	23, 416, 578
MteI	GCGCNGCGC	1 cut(s)	64
Mva1269I	GAATGC	2 cut(s)	289, 430
MvnI	CGCG	1 cut(s)	63
MwoI	GCNNNNNNNGC	2 cut(s)	35, 732
NdeII	GATC	2 cut(s)	13, 556
NlaIII	CATG	4 cut(s)	544, 617, 632, 766
NlaIV	GGNNCC	1 cut(s)	15
NmuCI	GTSAC	1 cut(s)	716
NsiI	ATGCAT	1 cut(s)	289
NspI	RCATGY	3 cut(s)	617, 632, 766
PaeI	GCATGC	1 cut(s)	632
PaqCI	CACCTGC	1 cut(s)	535
PceI	AGGCCT	2 cut(s)	53, 212
PciI	ACATGT	2 cut(s)	613, 762
PctI	GAATGC	2 cut(s)	289, 430
PfeI	GAWTC	5 cut(s)	85, 108, 302, 653, 701
PkrI	GCNGC	6 cut(s)	28, 65, 430, 519, 576, 586
PscI	ACATGT	2 cut(s)	613, 762
PspFI	CCCAGC	1 cut(s)	588
PspN4I	GGNNCC	1 cut(s)	15
PspPI	GGNCC	2 cut(s)	403, 418
PsuI	RGATCY	1 cut(s)	13
RsaI	GTAC	1 cut(s)	269
RsaNI	GTAC	1 cut(s)	268
SaqAI	TTAA	2 cut(s)	150, 188
SatI	GCNGC	6 cut(s)	27, 64, 429, 518, 575, 585
Sau3AI	GATC	2 cut(s)	13, 556
Sau96I	GGNCC	2 cut(s)	403, 418
ScaI	AGTACT	1 cut(s)	269
SduI	GDGCHC	1 cut(s)	554
SfaNI	GCATC	4 cut(s)	166, 296, 473, 571
SinI	GGWCC	2 cut(s)	403, 418
SmlI	CTYRAG	2 cut(s)	164, 501
SmoI	CTYRAG	2 cut(s)	164, 501
SphI	GCATGC	1 cut(s)	632
Sse9I	AATT	5 cut(s)	96, 185, 346, 374, 446
SseBI	AGGCCT	2 cut(s)	53, 212
SsiI	CCGC	5 cut(s)	26, 63, 572, 585, 626
SspMI	CTAG	1 cut(s)	633
StuI	AGGCCT	2 cut(s)	53, 212
TaaI	ACNGT	2 cut(s)	383, 722
TaqI	TCGA	1 cut(s)	706
TasI	AATT	5 cut(s)	96, 185, 346, 374, 446
TatI	WGTACW	1 cut(s)	267
TauI	GCSGC	3 cut(s)	29, 66, 587
TfiI	GAWTC	5 cut(s)	85, 108, 302, 653, 701
Tru1I	TTAA	2 cut(s)	150, 188
Tru9I	TTAA	2 cut(s)	150, 188
TscAI	CASTG	2 cut(s)	63, 388
TseFI	GTSAC	1 cut(s)	716
TseI	GCWGC	3 cut(s)	428, 517, 574
Tsp45I	GTSAC	1 cut(s)	716
TspGWI	ACGGA	2 cut(s)	62, 475
TspRI	CASTG	2 cut(s)	63, 388
VpaK11BI	GGWCC	2 cut(s)	403, 418
XapI	RAATTY	1 cut(s)	96
XceI	RCATGY	3 cut(s)	617, 632, 766
XspI	CTAG	1 cut(s)	633
ZrmI	AGTACT	1 cut(s)	269
Zsp2I	ATGCAT	1 cut(s)	289

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.