Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0009027

Physical Location & Seq

Genomic Coordinates Reverse (-)

32738700 .. 32741481

Gene Structure 2782 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1191600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGGGTTCCCAGGATCCTGTGCCGGAAGCTGGCAAGGGTAATGTTGCAACGGAGGCATCAGTGCGTGGGGCTTGTCCTGGAATAAAGAAACAGGGGAAAATTCCGAAAAGAATCCACAAGGCTGAGAGGGAGAGAAAGAAGCGTGAGCATTTTAACGAGCATTTTTTTGAGCTGGCTGATGCTCTTGAACTGAATCAGCAGAACAGTGGAAAGGCCTCTATACTAAGTGAAGCTACTCGACTGTTGAAGGACTTGTTTGGTCAGATTAAATGCTTACAGAAGGAAAATGCATCCCTGTTGTCTGAATCAAATTATATGACCCTTGAGAAGAATGAGCTGAGAGACGATAATTCTGCCTTAGAAACTCAGATCGAGAAATTGCAAAGTGAGATACAAGAGAGGGTGGCACAGTCTAAACCGGATCTAAATGCACCACCTTGCACAGAATTGAGACCAGAAGTTGCCTCCCATTTTACCGGAAATTGCATCGGATTTCCCACTCAAGAACCCGGCTTGCAGCAACCACCTGCTGTCTTTGTCATGCCTGTCGGCCCTGATCTCCAAGCTTATCCACAGCCGGATGTCGCCCACCTCACATCTAACACCACCTCACATGTGAGCAAACCGCAAGCTAGGTATCCAACCTCGGTGGACTCTTGGCCGTCCCAACTTCTCGGTGAGAAACCAACCGCAGGCAAAGGGTTTCGACAAAGCCGGGAAAACGACCATAGTATAATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006873 GO:0006875 GO:0006879 GO:0006950 GO:0007154 GO:0008150 GO:0009267 GO:0009605 GO:0009889 GO:0009987 GO:0009991 GO:0010106 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019725 GO:0030003 GO:0031323 GO:0031326 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0042592 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046916 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0055065 GO:0055072 GO:0055076 GO:0055080 GO:0055082 GO:0060255 GO:0065007 GO:0065008 GO:0071496 GO:0080090 GO:0098771 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

247

Amino Acids

27.21

Weight (kDa)

6.4

Isoelectric Point (pI)

51.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bHLH_IRO3	PF23177	33 - 110	1.9e-24	Iron-related transcription factor 3 bHLH domain
HLH	PF00010	36 - 85	9.6e-06	Helix-loop-helix DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009027)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47640 AT3G47640 AT3G47640
fragaria_vesca	FvH4_5g15171 FvH4_5g15171 FvH4_5g15171
malus_domestica	MD06G1191600.v1.1 MD14G1198000.v1.1
prunus_persica	Prupe.5G190100_v2.0.a1
pyrus_communis	pycom06g16970 pycom14g16440
rosa_chinensis	RchiOBHm_Chr7g0181001
rosa_multiflora	Rmu_co8331139.1_g000001
rosa_roxburghii	Rroxscaffold_3G00272350
rosa_rugosa	Rorug06G0438300 Rorug06G0438300 Rorug06G0438400
rosa_samantha	Rh7AG039600 Rh7BG039000 Rh7CG040800 Rh7DG039200
rosa_wichuraiana	Rw7G003260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	535
Acc36I	ACCTGC	1 cut(s)	535
AciI	CCGC	2 cut(s)	626, 690
AclWI	GGATC	3 cut(s)	8, 21, 429
AcoI	YGGCCR	1 cut(s)	659
AcsI	RAATTY	1 cut(s)	99
AfiI	CCNNNNNNNGG	2 cut(s)	29, 692
AflIII	ACRYGT	1 cut(s)	613
AgsI	TTSAA	2 cut(s)	188, 247
AjnI	CCWGG	2 cut(s)	9, 76
AluBI	AGCT	6 cut(s)	29, 172, 233, 337, 566, 632
AluI	AGCT	6 cut(s)	29, 172, 233, 337, 566, 632
Alw26I	GTCTC	2 cut(s)	336, 445
AlwI	GGATC	3 cut(s)	8, 21, 429
AoxI	GGCC	3 cut(s)	213, 550, 659
ApeKI	GCWGC	1 cut(s)	517
ApoI	RAATTY	1 cut(s)	99
AspS9I	GGNCC	1 cut(s)	551
AsuC2I	CCSGG	2 cut(s)	510, 716
AsuHPI	GGTGA	1 cut(s)	689
BamHI	GGATCC	1 cut(s)	13
BbvI	GCAGC	1 cut(s)	529
BceAI	ACGGC	1 cut(s)	646
BcgI	CGANNNNNNTGC	2 cut(s)	335, 369
BciT130I	CCWGG	2 cut(s)	11, 78
BciVI	GTATCC	1 cut(s)	648
BcnI	CCSGG	2 cut(s)	510, 716
BcoDI	GTCTC	2 cut(s)	336, 445
BfaI	CTAG	1 cut(s)	633
BfuAI	ACCTGC	1 cut(s)	535
BfuI	GTATCC	1 cut(s)	648
BisI	GCNGC	1 cut(s)	518
BlsI	GCNGC	1 cut(s)	519
Bme1390I	CCNGG	4 cut(s)	11, 78, 510, 716
BmgT120I	GGNCC	1 cut(s)	551
BmiI	GGNNCC	2 cut(s)	7, 15
BmrFI	CCNGG	4 cut(s)	11, 78, 510, 716
BmsI	GCATC	4 cut(s)	65, 169, 299, 495
BpuEI	CTTGAG	2 cut(s)	344, 486
BpuMI	CCSGG	2 cut(s)	510, 716
BsaI	GGTCTC	1 cut(s)	445
BsaJI	CCNNGG	2 cut(s)	9, 645
BsaWI	WCCGGW	2 cut(s)	418, 476
Bsc4I	CCNNNNNNNGG	2 cut(s)	29, 692
BseBI	CCWGG	2 cut(s)	11, 78
BseDI	CCNNGG	2 cut(s)	9, 645
BseGI	GGATG	2 cut(s)	290, 586
BseLI	CCNNNNNNNGG	2 cut(s)	29, 692
BseMII	CTCAG	3 cut(s)	114, 329, 380
BseXI	GCAGC	1 cut(s)	529
BshFI	GGCC	3 cut(s)	215, 552, 661
BsiSI	CCGG	6 cut(s)	23, 419, 477, 510, 578, 715
BslFI	GGGAC	1 cut(s)	649
BslI	CCNNNNNNNGG	2 cut(s)	29, 692
BsmAI	GTCTC	2 cut(s)	336, 445
BsmBI	CGTCTC	1 cut(s)	336
BsmFI	GGGAC	1 cut(s)	649
BsnI	GGCC	3 cut(s)	215, 552, 661
Bso31I	GGTCTC	1 cut(s)	445
Bsp143I	GATC	4 cut(s)	13, 369, 421, 556
BspACI	CCGC	2 cut(s)	626, 690
BspANI	GGCC	3 cut(s)	215, 552, 661
BspCNI	CTCAG	3 cut(s)	115, 330, 379
BspLI	GGNNCC	2 cut(s)	7, 15
BspMI	ACCTGC	1 cut(s)	535
BspPI	GGATC	3 cut(s)	8, 21, 429
BspTNI	GGTCTC	1 cut(s)	445
BssECI	CCNNGG	2 cut(s)	9, 645
BssMI	GATC	4 cut(s)	13, 369, 421, 556
Bst2UI	CCWGG	2 cut(s)	11, 78
Bst4CI	ACNGT	3 cut(s)	206, 243, 411
BstC8I	GCNNGC	5 cut(s)	31, 174, 515, 630, 694
BstDEI	CTNAG	5 cut(s)	123, 224, 338, 358, 366
BstF5I	GGATG	2 cut(s)	290, 586
BstKTI	GATC	4 cut(s)	16, 372, 424, 559
BstMAI	GTCTC	2 cut(s)	336, 445
BstMBI	GATC	4 cut(s)	13, 369, 421, 556
BstMWI	GCNNNNNNNGC	1 cut(s)	53
BstNI	CCWGG	2 cut(s)	11, 78
BstNSI	RCATGY	1 cut(s)	617
BstSCI	CCNGG	4 cut(s)	9, 76, 508, 714
BstV1I	GCAGC	1 cut(s)	529
BstX2I	RGATCY	2 cut(s)	13, 421
BstYI	RGATCY	2 cut(s)	13, 421
BsuI	GTATCC	1 cut(s)	648
BsuRI	GGCC	3 cut(s)	215, 552, 661
BtsCI	GGATG	2 cut(s)	290, 586
BtsIMutI	CAGTG	2 cut(s)	66, 211
BveI	ACCTGC	1 cut(s)	535
Cac8I	GCNNGC	5 cut(s)	31, 174, 515, 630, 694
Cfr13I	GGNCC	1 cut(s)	551
CspCI	CAANNNNNGTGG	2 cut(s)	630, 665
CviAII	CATG	2 cut(s)	541, 614
DdeI	CTNAG	5 cut(s)	123, 224, 338, 358, 366
DpnI	GATC	4 cut(s)	15, 371, 423, 558
DpnII	GATC	4 cut(s)	13, 369, 421, 556
EaeI	YGGCCR	1 cut(s)	659
Eco147I	AGGCCT	1 cut(s)	215
Eco31I	GGTCTC	1 cut(s)	445
EcoRII	CCWGG	2 cut(s)	9, 76
EcoT22I	ATGCAT	1 cut(s)	292
Esp3I	CGTCTC	1 cut(s)	336
FaeI	CATG	2 cut(s)	544, 617
FaiI	YATR	7 cut(s)	221, 315, 317, 542, 615, 729, 734
FaqI	GGGAC	1 cut(s)	649
FatI	CATG	2 cut(s)	540, 613
Fnu4HI	GCNGC	1 cut(s)	518
FokI	GGATG	2 cut(s)	277, 593
Fsp4HI	GCNGC	1 cut(s)	518
FspBI	CTAG	1 cut(s)	633
GluI	GCNGC	1 cut(s)	518
HaeIII	GGCC	3 cut(s)	215, 552, 661
HapII	CCGG	6 cut(s)	23, 419, 477, 510, 578, 715
Hin1II	CATG	2 cut(s)	544, 617
HindIII	AAGCTT	1 cut(s)	564
HinfI	GANTC	4 cut(s)	111, 193, 305, 653
HpaII	CCGG	6 cut(s)	23, 419, 477, 510, 578, 715
HphI	GGTGA	1 cut(s)	689
Hpy166II	GTNNAC	1 cut(s)	652
Hpy188I	TCNGA	5 cut(s)	105, 264, 304, 369, 491
Hpy188III	TCNNGA	3 cut(s)	185, 373, 503
Hpy8I	GTNNAC	1 cut(s)	652
HpyAV	CCTTC	2 cut(s)	241, 274
HpyCH4III	ACNGT	3 cut(s)	206, 243, 411
HpyCH4V	TGCA	7 cut(s)	47, 290, 382, 431, 441, 486, 517
HpyF10VI	GCNNNNNNNGC	1 cut(s)	53
HpyF3I	CTNAG	5 cut(s)	123, 224, 338, 358, 366
Hsp92II	CATG	2 cut(s)	544, 617
Kzo9I	GATC	4 cut(s)	13, 369, 421, 556
Lsp1109I	GCAGC	1 cut(s)	529
LweI	GCATC	4 cut(s)	65, 169, 299, 495
MaeI	CTAG	1 cut(s)	633
MalI	GATC	4 cut(s)	15, 371, 423, 558
MboI	GATC	4 cut(s)	13, 369, 421, 556
MboII	GAAGA	1 cut(s)	340
MflI	RGATCY	2 cut(s)	13, 421
MluCI	AATT	6 cut(s)	99, 310, 349, 377, 446, 481
MlyI	GAGTC	1 cut(s)	647
MmeI	TCCRAC	1 cut(s)	665
MnlI	CCTC	8 cut(s)	46, 120, 226, 393, 475, 602, 619, 655
Mph1103I	ATGCAT	1 cut(s)	292
MseI	TTAA	2 cut(s)	153, 267
MspI	CCGG	6 cut(s)	23, 419, 477, 510, 578, 715
MspR9I	CCNGG	4 cut(s)	11, 78, 510, 716
MvaI	CCWGG	2 cut(s)	11, 78
MwoI	GCNNNNNNNGC	1 cut(s)	53
NciI	CCSGG	2 cut(s)	510, 716
NdeII	GATC	4 cut(s)	13, 369, 421, 556
NlaIII	CATG	2 cut(s)	544, 617
NlaIV	GGNNCC	2 cut(s)	7, 15
NsiI	ATGCAT	1 cut(s)	292
NspI	RCATGY	1 cut(s)	617
PaqCI	CACCTGC	1 cut(s)	535
PceI	AGGCCT	1 cut(s)	215
PciI	ACATGT	1 cut(s)	613
PfeI	GAWTC	3 cut(s)	111, 193, 305
PfoI	TCCNGGA	1 cut(s)	76
PkrI	GCNGC	1 cut(s)	519
PleI	GAGTC	1 cut(s)	647
PpsI	GAGTC	1 cut(s)	647
PscI	ACATGT	1 cut(s)	613
Psp6I	CCWGG	2 cut(s)	9, 76
PspGI	CCWGG	2 cut(s)	9, 76
PspN4I	GGNNCC	2 cut(s)	7, 15
PspPI	GGNCC	1 cut(s)	551
PsuI	RGATCY	2 cut(s)	13, 421
SaqAI	TTAA	2 cut(s)	153, 267
SatI	GCNGC	1 cut(s)	518
Sau3AI	GATC	4 cut(s)	13, 369, 421, 556
Sau96I	GGNCC	1 cut(s)	551
SchI	GAGTC	1 cut(s)	647
ScrFI	CCNGG	4 cut(s)	11, 78, 510, 716
SfaNI	GCATC	4 cut(s)	65, 169, 299, 495
SmlI	CTYRAG	2 cut(s)	323, 501
SmoI	CTYRAG	2 cut(s)	323, 501
Sse9I	AATT	6 cut(s)	99, 310, 349, 377, 446, 481
SseBI	AGGCCT	1 cut(s)	215
SsiI	CCGC	2 cut(s)	626, 690
SspMI	CTAG	1 cut(s)	633
StuI	AGGCCT	1 cut(s)	215
StyD4I	CCNGG	4 cut(s)	9, 76, 508, 714
TaaI	ACNGT	3 cut(s)	206, 243, 411
TaqI	TCGA	3 cut(s)	238, 372, 706
TasI	AATT	6 cut(s)	99, 310, 349, 377, 446, 481
TfiI	GAWTC	3 cut(s)	111, 193, 305
Tru1I	TTAA	2 cut(s)	153, 267
Tru9I	TTAA	2 cut(s)	153, 267
TscAI	CASTG	2 cut(s)	66, 211
TseI	GCWGC	1 cut(s)	517
TspGWI	ACGGA	1 cut(s)	65
TspRI	CASTG	2 cut(s)	66, 211
XapI	RAATTY	1 cut(s)	99
XceI	RCATGY	1 cut(s)	617
XspI	CTAG	1 cut(s)	633
Zsp2I	ATGCAT	1 cut(s)	292

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.