Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8331139.1

Orthogroup ID

OG0009027

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 976

Gene Structure 976 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8331139.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ggtttgtcctggcaaaaagattcaggggaaaatgcctaagagaatccacaaggctgtgagggagaaacagaagcgtgagcatttgaatgatctttttcttgatctgtctgatgctctcgaactgaatcagcagaacactggaaaggccactatactttgtgaagctactcgactattaaaggatttgcttggtcaaatcgaatccttgagaaacgagaatgtatccttgttgtccgaatctaactatatgactgttgagaagaatgagctccgagaggatacttctgccttagaaactcagattgaaagattgcaaagtgagctacaagagcgggttcgccagtctaaacctgaccttaatgtaccacctgtagaagttagacaagaagtggcatcccattttcctggaaattgtgtcggatttcctgctcaagaatcagctttgcaacaagcacctgctgtctttgtcatgcccctccaccctgatctccaaacttatccaccggcagattccgcccacctcacatctaagaccaactcaaatgtgagcaaaccacaccctaggtatccaacctcggtggattcttggccatttcaacttctcagtgagcaaccagcagcaggcaaagactc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006873 GO:0006875 GO:0006879 GO:0006950 GO:0007154 GO:0008150 GO:0009267 GO:0009605 GO:0009889 GO:0009987 GO:0009991 GO:0010106 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019725 GO:0030003 GO:0031323 GO:0031326 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0042592 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046916 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0055065 GO:0055072 GO:0055076 GO:0055080 GO:0055082 GO:0060255 GO:0065007 GO:0065008 GO:0071496 GO:0080090 GO:0098771 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

211

Amino Acids

23.65

Weight (kDa)

6.11

Isoelectric Point (pI)

60.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009027)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47640 AT3G47640 AT3G47640
fragaria_vesca	FvH4_5g15171 FvH4_5g15171 FvH4_5g15171
malus_domestica	MD06G1191600.v1.1 MD14G1198000.v1.1
prunus_persica	Prupe.5G190100_v2.0.a1
pyrus_communis	pycom06g16970 pycom14g16440
rosa_chinensis	RchiOBHm_Chr7g0181001
rosa_multiflora	Rmu_co8331139.1_g000001
rosa_roxburghii	Rroxscaffold_3G00272350
rosa_rugosa	Rorug06G0438300 Rorug06G0438300 Rorug06G0438400
rosa_samantha	Rh7AG039600 Rh7BG039000 Rh7CG040800 Rh7DG039200
rosa_wichuraiana	Rw7G003260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	464
Acc36I	ACCTGC	1 cut(s)	464
AccBSI	CCGCTC	1 cut(s)	332
AciI	CCGC	2 cut(s)	332, 514
AcoI	YGGCCR	1 cut(s)	588
AfaI	GTAC	1 cut(s)	364
AfiI	CCNNNNNNNGG	1 cut(s)	621
AgsI	TTSAA	3 cut(s)	86, 306, 597
AjnI	CCWGG	2 cut(s)	8, 404
AluBI	AGCT	4 cut(s)	165, 269, 323, 441
AluI	AGCT	4 cut(s)	165, 269, 323, 441
Alw21I	GWGCWC	1 cut(s)	271
AoxI	GGCC	2 cut(s)	145, 588
ApeKI	GCWGC	1 cut(s)	618
AspA2I	CCTAGG	1 cut(s)	561
AvrII	CCTAGG	1 cut(s)	561
BalI	TGGCCA	1 cut(s)	590
BanII	GRGCYC	1 cut(s)	271
Bbv12I	GWGCWC	1 cut(s)	271
BciT130I	CCWGG	2 cut(s)	10, 406
BciVI	GTATCC	3 cut(s)	233, 272, 577
BfaI	CTAG	1 cut(s)	562
BfmI	CTRYAG	1 cut(s)	370
BfuAI	ACCTGC	1 cut(s)	464
BfuI	GTATCC	3 cut(s)	233, 272, 577
BisI	GCNGC	1 cut(s)	619
BlnI	CCTAGG	1 cut(s)	561
BlsI	GCNGC	1 cut(s)	620
Bme1390I	CCNGG	2 cut(s)	10, 406
BmrFI	CCNGG	2 cut(s)	10, 406
BmsI	GCATC	2 cut(s)	101, 402
BpuEI	CTTGAG	2 cut(s)	227, 415
BsaJI	CCNNGG	2 cut(s)	561, 574
Bsc4I	CCNNNNNNNGG	1 cut(s)	621
Bse118I	RCCGGY	1 cut(s)	503
Bse1I	ACTGG	2 cut(s)	143, 341
BseBI	CCWGG	2 cut(s)	10, 406
BseDI	CCNNGG	2 cut(s)	561, 574
BseGI	GGATG	1 cut(s)	393
BseLI	CCNNNNNNNGG	1 cut(s)	621
BseMII	CTCAG	2 cut(s)	312, 617
BseNI	ACTGG	2 cut(s)	143, 341
BshFI	GGCC	2 cut(s)	147, 590
BsiHKAI	GWGCWC	1 cut(s)	271
BsiSI	CCGG	1 cut(s)	504
BslI	CCNNNNNNNGG	1 cut(s)	621
BsnI	GGCC	2 cut(s)	147, 590
Bsp1286I	GDGCHC	1 cut(s)	271
Bsp143I	GATC	3 cut(s)	89, 101, 485
BspACI	CCGC	2 cut(s)	332, 514
BspANI	GGCC	2 cut(s)	147, 590
BspCNI	CTCAG	2 cut(s)	311, 616
BspMI	ACCTGC	1 cut(s)	464
BsrBI	CCGCTC	1 cut(s)	332
BsrFI	RCCGGY	1 cut(s)	503
BsrI	ACTGG	2 cut(s)	143, 341
BssAI	RCCGGY	1 cut(s)	503
BssECI	CCNNGG	2 cut(s)	561, 574
BssMI	GATC	3 cut(s)	89, 101, 485
BssT1I	CCWWGG	1 cut(s)	561
Bst2UI	CCWGG	2 cut(s)	10, 406
Bst4CI	ACNGT	1 cut(s)	254
BstC8I	GCNNGC	1 cut(s)	623
BstDEI	CTNAG	5 cut(s)	37, 290, 298, 529, 603
BstF5I	GGATG	1 cut(s)	393
BstKTI	GATC	3 cut(s)	92, 104, 488
BstMBI	GATC	3 cut(s)	89, 101, 485
BstMWI	GCNNNNNNNGC	3 cut(s)	320, 329, 513
BstNI	CCWGG	2 cut(s)	10, 406
BstSCI	CCNGG	2 cut(s)	8, 404
BstSFI	CTRYAG	1 cut(s)	370
BstXI	CCANNNNNNTGG	1 cut(s)	405
BsuI	GTATCC	3 cut(s)	233, 272, 577
BsuRI	GGCC	2 cut(s)	147, 590
BtsCI	GGATG	1 cut(s)	393
BtsIMutI	CAGTG	2 cut(s)	136, 611
BveI	ACCTGC	1 cut(s)	464
Cac8I	GCNNGC	1 cut(s)	623
Cfr10I	RCCGGY	1 cut(s)	503
Csp6I	GTAC	1 cut(s)	363
CspCI	CAANNNNNGTGG	2 cut(s)	559, 594
CviAII	CATG	1 cut(s)	470
CviJI	RGCY	7 cut(s)	54, 147, 165, 269, 323, 441, 590
CviKI_1	RGCY	7 cut(s)	54, 147, 165, 269, 323, 441, 590
CviQI	GTAC	1 cut(s)	363
DdeI	CTNAG	5 cut(s)	37, 290, 298, 529, 603
DpnI	GATC	3 cut(s)	91, 103, 487
DpnII	GATC	3 cut(s)	89, 101, 485
EaeI	YGGCCR	1 cut(s)	588
EciI	GGCGGA	1 cut(s)	503
Ecl136II	GAGCTC	1 cut(s)	269
Eco130I	CCWWGG	1 cut(s)	561
Eco24I	GRGCYC	1 cut(s)	271
Eco53kI	GAGCTC	1 cut(s)	269
EcoICRI	GAGCTC	1 cut(s)	269
EcoRII	CCWGG	2 cut(s)	8, 404
EcoT14I	CCWWGG	1 cut(s)	561
EcoT38I	GRGCYC	1 cut(s)	271
ErhI	CCWWGG	1 cut(s)	561
FaeI	CATG	1 cut(s)	473
FaiI	YATR	4 cut(s)	153, 247, 249, 471
FatI	CATG	1 cut(s)	469
FauI	CCCGC	1 cut(s)	325
Fnu4HI	GCNGC	1 cut(s)	619
FokI	GGATG	1 cut(s)	380
FriOI	GRGCYC	1 cut(s)	271
Fsp4HI	GCNGC	1 cut(s)	619
FspBI	CTAG	1 cut(s)	562
GluI	GCNGC	1 cut(s)	619
HaeIII	GGCC	2 cut(s)	147, 590
HapII	CCGG	1 cut(s)	504
Hin1II	CATG	1 cut(s)	473
HinfI	GANTC	9 cut(s)	20, 43, 125, 201, 237, 435, 510, 582, 630
HpaII	CCGG	1 cut(s)	504
Hpy188I	TCNGA	5 cut(s)	110, 236, 273, 301, 420
Hpy188III	TCNNGA	3 cut(s)	99, 117, 432
HpyCH4III	ACNGT	1 cut(s)	254
HpyCH4V	TGCA	2 cut(s)	314, 446
HpyF10VI	GCNNNNNNNGC	3 cut(s)	320, 329, 513
HpyF3I	CTNAG	5 cut(s)	37, 290, 298, 529, 603
Hsp92II	CATG	1 cut(s)	473
Kzo9I	GATC	3 cut(s)	89, 101, 485
LmnI	GCTCC	1 cut(s)	274
LweI	GCATC	2 cut(s)	101, 402
MaeI	CTAG	1 cut(s)	562
MalI	GATC	3 cut(s)	91, 103, 487
MbiI	CCGCTC	1 cut(s)	332
MboI	GATC	3 cut(s)	89, 101, 485
MboII	GAAGA	1 cut(s)	272
MhlI	GDGCHC	1 cut(s)	271
MlsI	TGGCCA	1 cut(s)	590
MluCI	AATT	1 cut(s)	410
MluNI	TGGCCA	1 cut(s)	590
MlyI	GAGTC	1 cut(s)	624
MmeI	TCCRAC	2 cut(s)	398, 594
MnlI	CCTC	5 cut(s)	52, 269, 486, 531, 584
Mox20I	TGGCCA	1 cut(s)	590
MscI	TGGCCA	1 cut(s)	590
MseI	TTAA	2 cut(s)	177, 358
MslI	CAYNNNNRTG	1 cut(s)	85
Msp20I	TGGCCA	1 cut(s)	590
MspI	CCGG	1 cut(s)	504
MspR9I	CCNGG	2 cut(s)	10, 406
MvaI	CCWGG	2 cut(s)	10, 406
MwoI	GCNNNNNNNGC	3 cut(s)	320, 329, 513
NdeII	GATC	3 cut(s)	89, 101, 485
NlaIII	CATG	1 cut(s)	473
PaqCI	CACCTGC	1 cut(s)	464
PfeI	GAWTC	8 cut(s)	20, 43, 125, 201, 237, 435, 510, 582
PfoI	TCCNGGA	1 cut(s)	404
PkrI	GCNGC	1 cut(s)	620
PleI	GAGTC	1 cut(s)	624
PpsI	GAGTC	1 cut(s)	624
Psp124BI	GAGCTC	1 cut(s)	271
Psp6I	CCWGG	2 cut(s)	8, 404
PspGI	CCWGG	2 cut(s)	8, 404
RsaI	GTAC	1 cut(s)	364
RsaNI	GTAC	1 cut(s)	363
RseI	CAYNNNNRTG	1 cut(s)	85
SacI	GAGCTC	1 cut(s)	271
SaqAI	TTAA	2 cut(s)	177, 358
SatI	GCNGC	1 cut(s)	619
Sau3AI	GATC	3 cut(s)	89, 101, 485
SchI	GAGTC	1 cut(s)	624
ScrFI	CCNGG	2 cut(s)	10, 406
SduI	GDGCHC	1 cut(s)	271
SfaNI	GCATC	2 cut(s)	101, 402
SfcI	CTRYAG	1 cut(s)	370
SmiMI	CAYNNNNRTG	1 cut(s)	85
SmlI	CTYRAG	2 cut(s)	206, 430
SmoI	CTYRAG	2 cut(s)	206, 430
Sse9I	AATT	1 cut(s)	410
SsiI	CCGC	2 cut(s)	332, 514
SspMI	CTAG	1 cut(s)	562
SstI	GAGCTC	1 cut(s)	271
StyD4I	CCNGG	2 cut(s)	8, 404
StyI	CCWWGG	1 cut(s)	561
TaaI	ACNGT	1 cut(s)	254
TaqI	TCGA	3 cut(s)	118, 170, 199
TasI	AATT	1 cut(s)	410
TfiI	GAWTC	8 cut(s)	20, 43, 125, 201, 237, 435, 510, 582
Tru1I	TTAA	2 cut(s)	177, 358
Tru9I	TTAA	2 cut(s)	177, 358
TscAI	CASTG	2 cut(s)	143, 611
TseI	GCWGC	1 cut(s)	618
TspRI	CASTG	2 cut(s)	143, 611
XmaJI	CCTAGG	1 cut(s)	561
XspI	CTAG	1 cut(s)	562

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.