Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009957

Physical Location & Seq

Genomic Coordinates Reverse (-)

17989798 .. 17992039

Gene Structure 2242 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G48540.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGAACTCTCGAGATCTTACACTCGTCTCTACATCTGCAATCTTCGGTGCTTTGATTTCAGCTCTAGCATTTCGCTTCTTCTCATCAAACCCTAAAAACCCCAAATCCCGAAAATTCACTTCCACCGAAATCTCTGCAATTTCCAGAAAATTCCCTGCTCTAGATCCTTTCAGTCCTTTGAAACGAAATGGGTACTTATCATGGGATGATTATTTCATGGCGATTGCATTCCTTTCTGCAGAACGATCCAAGGATCCTAACAGGCAGGTTGGCGCATGTTTGGTGAGCCAAAATGGTGTAATCCTTGGGATTGGCTATAATGGTTTTCCAAGAGGCTGCTCTGATGACAAACTTCCTTGGGCCAAGAAATCAAGAACTGGGGACCCATTAGAGACCAAGTATCCATATGTTTGTCACGCTGAAGTCAATGCCATACTAAACACAAACCACGCATCGGCGGCTGGCCAGAAGCTTTATGTGACAATGTTCCCTTGCAATGAATGTGCCAAGATTATTTTACAGTCTGGTGTTGCTGAGGTAATCTATTTTGTGGAAAAGAGACCAAATGACTCAGATGTTGCCTATGTAGCTTCTCACAAGCTCTTATCCATGGCAAACGTCAAAGTCAGGAAACATCAACCAGAGATGGATGAGATCTTGATCAAGTTCGAAGAACACTTACTCCAACCAGAGACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00240 ko01100 map00240 map01100

Pfam Domains

Protein Families

dCMP_cyt_deam_1

Protein Analysis

232

Amino Acids

25.86

Weight (kDa)

8.89

Isoelectric Point (pI)

41.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
dCMP_cyt_deam_1	PF00383	67 - 183	5.5e-24	Cytidine and deoxycytidylate deaminase zinc-binding region
MafB19-deam	PF14437	67 - 213	1.8e-12	MafB19-like deaminase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009957)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48540
fragaria_vesca	FvH4_5g08340 FvH4_5g08340 FvH4_5g08340 FvH4_5g08340 FvH4_5g08340
malus_domestica	MD14G1156900.v1.1
prunus_persica	Prupe.5G150900_v2.0.a1 Prupe.5G150900_v2.0.a1
pyrus_communis	pycom14g13040
rosa_chinensis	RchiOBHm_Chr7g0190121
rosa_laevigata	RLG00000004564
rosa_multiflora	Rmu_sc0000690.1_g000051 Rmu_sc0004886.1_g000013
rosa_roxburghii	Rroxscaffold_3G00264860
rosa_rugosa	Rorug06G0502400 Rorug06G0502500
rosa_samantha	Rh7AG108000 Rh7BG110300 Rh7DG111100
rosa_wichuraiana	Rw7G009330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	256
AciI	CCGC	1 cut(s)	458
AclWI	GGATC	4 cut(s)	158, 240, 248, 261
AcoI	YGGCCR	1 cut(s)	463
AcsI	RAATTY	2 cut(s)	113, 149
AcuI	CTGAAG	1 cut(s)	441
AfaI	GTAC	1 cut(s)	194
AfiI	CCNNNNNNNGG	1 cut(s)	454
AgsI	TTSAA	1 cut(s)	181
AloI	GAACNNNNNNTCC	2 cut(s)	666, 698
AluBI	AGCT	4 cut(s)	62, 472, 590, 601
AluI	AGCT	4 cut(s)	62, 472, 590, 601
Alw26I	GTCTC	4 cut(s)	31, 386, 553, 686
AlwI	GGATC	4 cut(s)	158, 240, 248, 261
Ama87I	CYCGRG	1 cut(s)	9
AoxI	GGCC	2 cut(s)	360, 463
ApeKI	GCWGC	1 cut(s)	336
ApoI	RAATTY	2 cut(s)	113, 149
AspLEI	GCGC	1 cut(s)	275
AspS9I	GGNCC	2 cut(s)	360, 382
AsuHPI	GGTGA	1 cut(s)	295
AsuII	TTCGAA	1 cut(s)	669
AvaI	CYCGRG	1 cut(s)	9
AvaII	GGWCC	1 cut(s)	382
BalI	TGGCCA	1 cut(s)	465
BamHI	GGATCC	1 cut(s)	253
BarI	GAAGNNNNNNTAC	2 cut(s)	663, 695
BbvCI	CCTCAGC	1 cut(s)	534
BbvI	GCAGC	1 cut(s)	323
BccI	CCATC	1 cut(s)	640
BcgI	CGANNNNNNTGC	2 cut(s)	116, 150
BciVI	GTATCC	1 cut(s)	411
BclI	TGATCA	1 cut(s)	660
BcoDI	GTCTC	4 cut(s)	31, 386, 553, 686
BfaI	CTAG	2 cut(s)	65, 161
BfmI	CTRYAG	1 cut(s)	237
BfuAI	ACCTGC	1 cut(s)	256
BfuI	GTATCC	1 cut(s)	411
BglII	AGATCT	2 cut(s)	13, 654
BisI	GCNGC	2 cut(s)	337, 459
BlsI	GCNGC	2 cut(s)	338, 460
Bme18I	GGWCC	1 cut(s)	382
BmeT110I	CYCGRG	1 cut(s)	9
BmgT120I	GGNCC	2 cut(s)	360, 382
BmiI	GGNNCC	3 cut(s)	255, 383, 384
BmrI	ACTGGG	1 cut(s)	387
BmsI	GCATC	1 cut(s)	461
BmuI	ACTGGG	1 cut(s)	387
Bpu10I	CCTNAGC	1 cut(s)	534
Bpu14I	TTCGAA	1 cut(s)	669
BsaBI	GATNNNNATC	1 cut(s)	659
BsaI	GGTCTC	3 cut(s)	386, 553, 686
BsaJI	CCNNGG	4 cut(s)	249, 304, 356, 609
BsaXI	ACNNNNNCTCC	2 cut(s)	666, 696
Bsc4I	CCNNNNNNNGG	1 cut(s)	454
Bse1I	ACTGG	1 cut(s)	382
Bse3DI	GCAATG	1 cut(s)	502
Bse8I	GATNNNNATC	1 cut(s)	659
BseDI	CCNNGG	4 cut(s)	249, 304, 356, 609
BseGI	GGATG	2 cut(s)	211, 655
BseJI	GATNNNNATC	1 cut(s)	659
BseLI	CCNNNNNNNGG	1 cut(s)	454
BseMI	GCAATG	1 cut(s)	502
BseMII	CTCAG	2 cut(s)	525, 585
BseNI	ACTGG	1 cut(s)	382
BseXI	GCAGC	1 cut(s)	323
BshFI	GGCC	2 cut(s)	362, 465
BsiHKCI	CYCGRG	1 cut(s)	9
BslFI	GGGAC	1 cut(s)	395
BslI	CCNNNNNNNGG	1 cut(s)	454
BsmAI	GTCTC	4 cut(s)	31, 386, 553, 686
BsmBI	CGTCTC	1 cut(s)	31
BsmFI	GGGAC	1 cut(s)	395
BsmI	GAATGC	1 cut(s)	227
BsnI	GGCC	2 cut(s)	362, 465
Bso31I	GGTCTC	3 cut(s)	386, 553, 686
BsoBI	CYCGRG	1 cut(s)	9
Bsp119I	TTCGAA	1 cut(s)	669
Bsp143I	GATC	6 cut(s)	13, 163, 245, 253, 654, 660
Bsp19I	CCATGG	1 cut(s)	609
BspACI	CCGC	1 cut(s)	458
BspANI	GGCC	2 cut(s)	362, 465
BspCNI	CTCAG	2 cut(s)	526, 584
BspLI	GGNNCC	3 cut(s)	255, 383, 384
BspMAI	CTGCAG	1 cut(s)	241
BspMI	ACCTGC	1 cut(s)	256
BspPI	GGATC	4 cut(s)	158, 240, 248, 261
BspT104I	TTCGAA	1 cut(s)	669
BspTNI	GGTCTC	3 cut(s)	386, 553, 686
BsrDI	GCAATG	1 cut(s)	502
BsrI	ACTGG	1 cut(s)	382
BssECI	CCNNGG	4 cut(s)	249, 304, 356, 609
BssMI	GATC	6 cut(s)	13, 163, 245, 253, 654, 660
BssT1I	CCWWGG	4 cut(s)	249, 304, 356, 609
Bst4CI	ACNGT	1 cut(s)	522
BstBI	TTCGAA	1 cut(s)	669
BstC8I	GCNNGC	1 cut(s)	463
BstDEI	CTNAG	2 cut(s)	534, 571
BstDSI	CCRYGG	1 cut(s)	609
BstF5I	GGATG	2 cut(s)	211, 655
BstHHI	GCGC	1 cut(s)	275
BstKTI	GATC	6 cut(s)	16, 166, 248, 256, 657, 663
BstMAI	GTCTC	4 cut(s)	31, 386, 553, 686
BstMBI	GATC	6 cut(s)	13, 163, 245, 253, 654, 660
BstMWI	GCNNNNNNNGC	2 cut(s)	458, 587
BstNSI	RCATGY	1 cut(s)	279
BstSFI	CTRYAG	1 cut(s)	237
BstV1I	GCAGC	1 cut(s)	323
BstX2I	RGATCY	4 cut(s)	13, 163, 253, 654
BstYI	RGATCY	4 cut(s)	13, 163, 253, 654
BsuI	GTATCC	1 cut(s)	411
BsuRI	GGCC	2 cut(s)	362, 465
BtgI	CCRYGG	1 cut(s)	609
BtsCI	GGATG	2 cut(s)	211, 655
BveI	ACCTGC	1 cut(s)	256
Cac8I	GCNNGC	1 cut(s)	463
CfoI	GCGC	1 cut(s)	275
Cfr13I	GGNCC	2 cut(s)	360, 382
Csp6I	GTAC	1 cut(s)	193
CviAII	CATG	4 cut(s)	201, 217, 276, 610
CviQI	GTAC	1 cut(s)	193
DdeI	CTNAG	2 cut(s)	534, 571
DpnI	GATC	6 cut(s)	15, 165, 247, 255, 656, 662
DpnII	GATC	6 cut(s)	13, 163, 245, 253, 654, 660
EaeI	YGGCCR	1 cut(s)	463
Eco130I	CCWWGG	4 cut(s)	249, 304, 356, 609
Eco31I	GGTCTC	3 cut(s)	386, 553, 686
Eco47I	GGWCC	1 cut(s)	382
Eco57I	CTGAAG	1 cut(s)	441
Eco88I	CYCGRG	1 cut(s)	9
EcoO109I	RGGNCCY	1 cut(s)	382
EcoT14I	CCWWGG	4 cut(s)	249, 304, 356, 609
ErhI	CCWWGG	4 cut(s)	249, 304, 356, 609
Esp3I	CGTCTC	1 cut(s)	31
FaeI	CATG	4 cut(s)	204, 220, 279, 613
FaqI	GGGAC	1 cut(s)	395
FatI	CATG	4 cut(s)	200, 216, 275, 609
FauNDI	CATATG	1 cut(s)	406
FbaI	TGATCA	1 cut(s)	660
Fnu4HI	GCNGC	2 cut(s)	337, 459
FokI	GGATG	2 cut(s)	218, 662
Fsp4HI	GCNGC	2 cut(s)	337, 459
FspBI	CTAG	2 cut(s)	65, 161
GlaI	GCGC	1 cut(s)	274
GluI	GCNGC	2 cut(s)	337, 459
HaeIII	GGCC	2 cut(s)	362, 465
HhaI	GCGC	1 cut(s)	275
Hin1II	CATG	4 cut(s)	204, 220, 279, 613
Hin6I	GCGC	1 cut(s)	273
HinP1I	GCGC	1 cut(s)	273
HindIII	AAGCTT	1 cut(s)	470
HinfI	GANTC	1 cut(s)	569
HphI	GGTGA	1 cut(s)	295
Hpy188I	TCNGA	2 cut(s)	343, 574
Hpy188III	TCNNGA	8 cut(s)	9, 11, 108, 144, 161, 372, 628, 658
HpyCH4III	ACNGT	1 cut(s)	522
HpyCH4IV	ACGT	1 cut(s)	618
HpyCH4V	TGCA	5 cut(s)	38, 137, 227, 239, 495
HpyF10VI	GCNNNNNNNGC	2 cut(s)	458, 587
HpyF3I	CTNAG	2 cut(s)	534, 571
HpySE526I	ACGT	1 cut(s)	618
Hsp92II	CATG	4 cut(s)	204, 220, 279, 613
HspAI	GCGC	1 cut(s)	273
KflI	GGGWCCC	1 cut(s)	382
Ksp22I	TGATCA	1 cut(s)	660
Kzo9I	GATC	6 cut(s)	13, 163, 245, 253, 654, 660
Lsp1109I	GCAGC	1 cut(s)	323
LweI	GCATC	1 cut(s)	461
MaeI	CTAG	2 cut(s)	65, 161
MaeII	ACGT	1 cut(s)	618
MaeIII	GTNAC	2 cut(s)	413, 478
MalI	GATC	6 cut(s)	15, 165, 247, 255, 656, 662
MboI	GATC	6 cut(s)	13, 163, 245, 253, 654, 660
MboII	GAAGA	3 cut(s)	34, 70, 683
MflI	RGATCY	4 cut(s)	13, 163, 253, 654
MlsI	TGGCCA	1 cut(s)	465
MluCI	AATT	3 cut(s)	113, 138, 149
MluNI	TGGCCA	1 cut(s)	465
MlyI	GAGTC	1 cut(s)	563
MnlI	CCTC	2 cut(s)	326, 529
Mox20I	TGGCCA	1 cut(s)	465
MscI	TGGCCA	1 cut(s)	465
Msp20I	TGGCCA	1 cut(s)	465
Mva1269I	GAATGC	1 cut(s)	227
MwoI	GCNNNNNNNGC	2 cut(s)	458, 587
NcoI	CCATGG	1 cut(s)	609
NdeI	CATATG	1 cut(s)	406
NdeII	GATC	6 cut(s)	13, 163, 245, 253, 654, 660
NlaIII	CATG	4 cut(s)	204, 220, 279, 613
NlaIV	GGNNCC	3 cut(s)	255, 383, 384
NmuCI	GTSAC	2 cut(s)	413, 478
NspI	RCATGY	1 cut(s)	279
NspV	TTCGAA	1 cut(s)	669
PaeR7I	CTCGAG	1 cut(s)	9
PctI	GAATGC	1 cut(s)	227
PkrI	GCNGC	2 cut(s)	338, 460
PleI	GAGTC	1 cut(s)	563
PpsI	GAGTC	1 cut(s)	563
PpuMI	RGGWCCY	1 cut(s)	382
Psp5II	RGGWCCY	1 cut(s)	382
PspN4I	GGNNCC	3 cut(s)	255, 383, 384
PspPI	GGNCC	2 cut(s)	360, 382
PspPPI	RGGWCCY	1 cut(s)	382
PstI	CTGCAG	1 cut(s)	241
PsuI	RGATCY	4 cut(s)	13, 163, 253, 654
RsaI	GTAC	1 cut(s)	194
RsaNI	GTAC	1 cut(s)	193
SatI	GCNGC	2 cut(s)	337, 459
Sau3AI	GATC	6 cut(s)	13, 163, 245, 253, 654, 660
Sau96I	GGNCC	2 cut(s)	360, 382
SchI	GAGTC	1 cut(s)	563
SetI	ASST	8 cut(s)	64, 270, 474, 540, 592, 603, 621, 698
SfaNI	GCATC	1 cut(s)	461
SfcI	CTRYAG	1 cut(s)	237
Sfr274I	CTCGAG	1 cut(s)	9
SfuI	TTCGAA	1 cut(s)	669
SinI	GGWCC	1 cut(s)	382
SlaI	CTCGAG	1 cut(s)	9
SmlI	CTYRAG	1 cut(s)	9
SmoI	CTYRAG	1 cut(s)	9
Sse9I	AATT	3 cut(s)	113, 138, 149
SsiI	CCGC	1 cut(s)	458
SspMI	CTAG	2 cut(s)	65, 161
StyI	CCWWGG	4 cut(s)	249, 304, 356, 609
TaaI	ACNGT	1 cut(s)	522
TaiI	ACGT	1 cut(s)	621
TaqI	TCGA	2 cut(s)	10, 669
TasI	AATT	3 cut(s)	113, 138, 149
TauI	GCSGC	1 cut(s)	461
TseFI	GTSAC	2 cut(s)	413, 478
TseI	GCWGC	1 cut(s)	336
Tsp45I	GTSAC	2 cut(s)	413, 478
TspDTI	ATGAA	3 cut(s)	17, 205, 513
VpaK11BI	GGWCC	1 cut(s)	382
XapI	RAATTY	2 cut(s)	113, 149
XbaI	TCTAGA	1 cut(s)	160
XceI	RCATGY	1 cut(s)	279
XhoI	CTCGAG	1 cut(s)	9
XspI	CTAG	2 cut(s)	65, 161

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.