Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0009957

Physical Location & Seq

Genomic Coordinates Forward (+)

9298331 .. 9301184

Gene Structure 2854 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ16980

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGGGCGTACCGAATGGGCCAAAGCACCATTGGACCTACAAAGTCCGAACGAACAGCAAACTCCCACGTGGCCTATTTTGCCCGCGAGTTTTCTACGCTCACGGATCCTCAGTGCAATTTTCCCGCTACTACTTCTATCGTCTCAGCTCGGGAACTGGAAATTTTCGCGGGAAAAATTGTTCTCCTTCTGGAGCTAAAATGAACTCCCTCGAGCTCACTCTGGTCTCCACCGCCACCGTCATCGGTGCCCTAGCCTCTGCGCTAGCCATCCGCGTCTTCTTCACAAAACCTAAGAAGCAGTCCCCAAAACTCAATTCCTCCCAAAACGGCGTCGTTTCCAGGAAGTGCTGTTCTCAGAGCCCTTTCGACCCCTCAAAACGCAAAGGGTATTTGACATGGGATGATTACTTTATGGCAATTGCGTTTTTATCAGCTGAAAGATCCAAAGACCCTAACAGGCAGGTTGGAGCATGCTTGGTGAGTCAAAGTGGTATAATTCTAGGAATTGGGTATAATGGTTTCCCAAGAGGTTGTTCGGACGACAAGCTCCCTTGGGCAAAGATATCCAGAACTGGGGATCCTTTGGAGACAAAATATCCTTATGTTTGTCATGCTGAAGTCAATGCAATCCTAAACACCAATCATGCTTCTGCTGCTGGACAGAGGCTTTATGTGACCATGTTCCCTTGCAATGAGTGTGCCAAGATAATCATTCAGTCAGGAGTTGCTGAAGTTGTATATTTTGTGGAAAAGAGGTTAAACAATCCAGATATCACGTACATTGCTTCTCACAAACTACTCTCAATGGCTGGTGTTAAAGTCAGGAAACATCAACCACAAATGAACCAAATTCTAATCAACTTTGAGGAGCCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00240 ko01100 map00240 map01100

Pfam Domains

Protein Families

dCMP_cyt_deam_1

Protein Analysis

291

Amino Acids

32.3

Weight (kDa)

9.7

Isoelectric Point (pI)

36.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
dCMP_cyt_deam_1	PF00383	132 - 248	7e-24	Cytidine and deoxycytidylate deaminase zinc-binding region
MafB19-deam	PF14437	133 - 255	1.2e-12	MafB19-like deaminase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009957)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48540
fragaria_vesca	FvH4_5g08340 FvH4_5g08340 FvH4_5g08340 FvH4_5g08340 FvH4_5g08340
malus_domestica	MD14G1156900.v1.1
prunus_persica	Prupe.5G150900_v2.0.a1 Prupe.5G150900_v2.0.a1
pyrus_communis	pycom14g13040
rosa_chinensis	RchiOBHm_Chr7g0190121
rosa_laevigata	RLG00000004564
rosa_multiflora	Rmu_sc0000690.1_g000051 Rmu_sc0004886.1_g000013
rosa_roxburghii	Rroxscaffold_3G00264860
rosa_rugosa	Rorug06G0502400 Rorug06G0502500
rosa_samantha	Rh7AG108000 Rh7BG110300 Rh7DG111100
rosa_wichuraiana	Rw7G009330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	451
AccB1I	GGYRCC	1 cut(s)	245
AccII	CGCG	3 cut(s)	85, 168, 273
AciI	CCGC	5 cut(s)	83, 124, 168, 231, 271
AclWI	GGATC	5 cut(s)	99, 112, 435, 572, 585
AcsI	RAATTY	2 cut(s)	160, 849
AcuI	CTGAAG	2 cut(s)	636, 750
AcvI	CACGTG	1 cut(s)	68
AcyI	GRCGYC	1 cut(s)	330
AfaI	GTAC	2 cut(s)	9, 779
AfiI	CCNNNNNNNGG	1 cut(s)	573
AjnI	CCWGG	1 cut(s)	338
AjuI	GAANNNNNNNTTGG	4 cut(s)	298, 330, 517, 549
AloI	GAACNNNNNNTCC	6 cut(s)	163, 195, 334, 366, 562, 594
AluBI	AGCT	5 cut(s)	147, 194, 214, 434, 547
AluI	AGCT	5 cut(s)	147, 194, 214, 434, 547
Alw21I	GWGCWC	1 cut(s)	216
Alw26I	GTCTC	3 cut(s)	146, 229, 581
AlwI	GGATC	5 cut(s)	99, 112, 435, 572, 585
Ama87I	CYCGRG	2 cut(s)	148, 209
AoxI	GGCC	2 cut(s)	17, 70
ApeKI	GCWGC	1 cut(s)	653
ApoI	RAATTY	2 cut(s)	160, 849
AspLEI	GCGC	1 cut(s)	262
AspS9I	GGNCC	2 cut(s)	17, 33
AsuHPI	GGTGA	1 cut(s)	490
AsuNHI	GCTAGC	1 cut(s)	262
AvaI	CYCGRG	2 cut(s)	148, 209
AvaII	GGWCC	1 cut(s)	33
BaeGI	GKGCMC	1 cut(s)	250
BamHI	GGATCC	2 cut(s)	104, 577
BanI	GGYRCC	1 cut(s)	245
BanII	GRGCYC	3 cut(s)	216, 362, 873
BbrPI	CACGTG	1 cut(s)	68
BbsI	GAAGAC	1 cut(s)	268
Bbv12I	GWGCWC	1 cut(s)	216
BbvI	GCAGC	1 cut(s)	640
BccI	CCATC	1 cut(s)	275
BceAI	ACGGC	1 cut(s)	343
BciT130I	CCWGG	1 cut(s)	340
BcoDI	GTCTC	3 cut(s)	146, 229, 581
BfaI	CTAG	3 cut(s)	251, 263, 500
BfuAI	ACCTGC	1 cut(s)	451
BisI	GCNGC	1 cut(s)	654
BlsI	GCNGC	1 cut(s)	655
Bme1390I	CCNGG	1 cut(s)	340
Bme18I	GGWCC	1 cut(s)	33
BmeT110I	CYCGRG	2 cut(s)	148, 209
BmgT120I	GGNCC	2 cut(s)	17, 33
BmiI	GGNNCC	4 cut(s)	106, 247, 579, 870
BmrFI	CCNGG	1 cut(s)	340
BmrI	ACTGGG	1 cut(s)	582
BmtI	GCTAGC	1 cut(s)	266
BmuI	ACTGGG	1 cut(s)	582
BpiI	GAAGAC	1 cut(s)	268
BpmI	CTGGAG	1 cut(s)	210
BsaAI	YACGTR	2 cut(s)	68, 777
BsaHI	GRCGYC	1 cut(s)	330
BsaI	GGTCTC	1 cut(s)	229
BsaJI	CCNNGG	1 cut(s)	551
Bsc4I	CCNNNNNNNGG	1 cut(s)	573
Bse1I	ACTGG	2 cut(s)	160, 577
Bse3DI	GCAATG	2 cut(s)	697, 780
BseBI	CCWGG	1 cut(s)	340
BseDI	CCNNGG	1 cut(s)	551
BseGI	GGATG	2 cut(s)	267, 406
BseLI	CCNNNNNNNGG	1 cut(s)	573
BseMI	GCAATG	2 cut(s)	697, 780
BseMII	CTCAG	3 cut(s)	123, 157, 368
BseNI	ACTGG	2 cut(s)	160, 577
BseSI	GKGCMC	1 cut(s)	250
BseXI	GCAGC	1 cut(s)	640
Bsh1236I	CGCG	3 cut(s)	85, 168, 273
BshFI	GGCC	2 cut(s)	19, 72
BshNI	GGYRCC	1 cut(s)	245
BsiHKAI	GWGCWC	1 cut(s)	216
BsiHKCI	CYCGRG	2 cut(s)	148, 209
BslFI	GGGAC	1 cut(s)	286
BslI	CCNNNNNNNGG	1 cut(s)	573
BsmAI	GTCTC	3 cut(s)	146, 229, 581
BsmBI	CGTCTC	1 cut(s)	146
BsmFI	GGGAC	1 cut(s)	286
BsnI	GGCC	2 cut(s)	19, 72
Bso31I	GGTCTC	1 cut(s)	229
BsoBI	CYCGRG	2 cut(s)	148, 209
Bsp1286I	GDGCHC	4 cut(s)	216, 250, 362, 873
Bsp143I	GATC	3 cut(s)	104, 440, 577
BspACI	CCGC	5 cut(s)	83, 124, 168, 231, 271
BspANI	GGCC	2 cut(s)	19, 72
BspCNI	CTCAG	3 cut(s)	122, 156, 367
BspFNI	CGCG	3 cut(s)	85, 168, 273
BspLI	GGNNCC	4 cut(s)	106, 247, 579, 870
BspMI	ACCTGC	1 cut(s)	451
BspOI	GCTAGC	1 cut(s)	266
BspPI	GGATC	5 cut(s)	99, 112, 435, 572, 585
BspT107I	GGYRCC	1 cut(s)	245
BspTNI	GGTCTC	1 cut(s)	229
BsrDI	GCAATG	2 cut(s)	697, 780
BsrI	ACTGG	2 cut(s)	160, 577
BssECI	CCNNGG	1 cut(s)	551
BssMI	GATC	3 cut(s)	104, 440, 577
BssNI	GRCGYC	1 cut(s)	330
BssT1I	CCWWGG	1 cut(s)	551
Bst2UI	CCWGG	1 cut(s)	340
Bst4CI	ACNGT	1 cut(s)	238
BstACI	GRCGYC	1 cut(s)	330
BstBAI	YACGTR	2 cut(s)	68, 777
BstC8I	GCNNGC	3 cut(s)	83, 264, 472
BstDEI	CTNAG	4 cut(s)	109, 143, 291, 354
BstF5I	GGATG	2 cut(s)	267, 406
BstFNI	CGCG	3 cut(s)	85, 168, 273
BstHHI	GCGC	1 cut(s)	262
BstKTI	GATC	3 cut(s)	107, 443, 580
BstMAI	GTCTC	3 cut(s)	146, 229, 581
BstMBI	GATC	3 cut(s)	104, 440, 577
BstMWI	GCNNNNNNNGC	2 cut(s)	78, 653
BstNI	CCWGG	1 cut(s)	340
BstNSI	RCATGY	1 cut(s)	474
BstSCI	CCNGG	1 cut(s)	338
BstSLI	GKGCMC	1 cut(s)	250
BstUI	CGCG	3 cut(s)	85, 168, 273
BstV1I	GCAGC	1 cut(s)	640
BstV2I	GAAGAC	1 cut(s)	268
BstX2I	RGATCY	3 cut(s)	104, 440, 577
BstYI	RGATCY	3 cut(s)	104, 440, 577
BsuRI	GGCC	2 cut(s)	19, 72
BtsCI	GGATG	2 cut(s)	267, 406
BtsIMutI	CAGTG	1 cut(s)	117
BveI	ACCTGC	1 cut(s)	451
Cac8I	GCNNGC	3 cut(s)	83, 264, 472
CfoI	GCGC	1 cut(s)	262
Cfr13I	GGNCC	2 cut(s)	17, 33
CseI	GACGC	2 cut(s)	262, 319
Csp6I	GTAC	2 cut(s)	8, 778
CviAII	CATG	5 cut(s)	396, 471, 611, 644, 679
CviQI	GTAC	2 cut(s)	8, 778
DdeI	CTNAG	4 cut(s)	109, 143, 291, 354
DpnI	GATC	3 cut(s)	106, 442, 579
DpnII	GATC	3 cut(s)	104, 440, 577
Ecl136II	GAGCTC	1 cut(s)	214
Eco130I	CCWWGG	1 cut(s)	551
Eco24I	GRGCYC	3 cut(s)	216, 362, 873
Eco31I	GGTCTC	1 cut(s)	229
Eco32I	GATATC	2 cut(s)	564, 772
Eco47I	GGWCC	1 cut(s)	33
Eco53kI	GAGCTC	1 cut(s)	214
Eco57I	CTGAAG	2 cut(s)	636, 750
Eco72I	CACGTG	1 cut(s)	68
Eco88I	CYCGRG	2 cut(s)	148, 209
EcoICRI	GAGCTC	1 cut(s)	214
EcoRII	CCWGG	1 cut(s)	338
EcoRV	GATATC	2 cut(s)	564, 772
EcoT14I	CCWWGG	1 cut(s)	551
EcoT38I	GRGCYC	3 cut(s)	216, 362, 873
ErhI	CCWWGG	1 cut(s)	551
Esp3I	CGTCTC	1 cut(s)	146
FaeI	CATG	5 cut(s)	399, 474, 614, 647, 682
FaqI	GGGAC	1 cut(s)	286
FatI	CATG	5 cut(s)	395, 470, 610, 643, 678
FauI	CCCGC	3 cut(s)	90, 131, 161
Fnu4HI	GCNGC	1 cut(s)	654
FokI	GGATG	2 cut(s)	254, 413
FriOI	GRGCYC	3 cut(s)	216, 362, 873
Fsp4HI	GCNGC	1 cut(s)	654
FspBI	CTAG	3 cut(s)	251, 263, 500
GlaI	GCGC	1 cut(s)	261
GluI	GCNGC	1 cut(s)	654
GsuI	CTGGAG	1 cut(s)	210
HaeIII	GGCC	2 cut(s)	19, 72
HgaI	GACGC	2 cut(s)	262, 319
HhaI	GCGC	1 cut(s)	262
Hin1I	GRCGYC	1 cut(s)	330
Hin1II	CATG	5 cut(s)	399, 474, 614, 647, 682
Hin6I	GCGC	1 cut(s)	260
HinP1I	GCGC	1 cut(s)	260
HinfI	GANTC	1 cut(s)	481
HphI	GGTGA	1 cut(s)	490
Hpy188I	TCNGA	3 cut(s)	47, 357, 538
Hpy188III	TCNNGA	6 cut(s)	150, 189, 567, 720, 767, 823
Hpy99I	CGWCG	1 cut(s)	335
HpyAV	CCTTC	1 cut(s)	195
HpyCH4III	ACNGT	1 cut(s)	238
HpyCH4IV	ACGT	2 cut(s)	67, 776
HpyCH4V	TGCA	3 cut(s)	115, 626, 690
HpyF10VI	GCNNNNNNNGC	2 cut(s)	78, 653
HpyF3I	CTNAG	4 cut(s)	109, 143, 291, 354
HpySE526I	ACGT	2 cut(s)	67, 776
Hsp92I	GRCGYC	1 cut(s)	330
Hsp92II	CATG	5 cut(s)	399, 474, 614, 647, 682
HspAI	GCGC	1 cut(s)	260
Kzo9I	GATC	3 cut(s)	104, 440, 577
LmnI	GCTCC	4 cut(s)	191, 467, 552, 868
Lsp1109I	GCAGC	1 cut(s)	640
MaeI	CTAG	3 cut(s)	251, 263, 500
MaeII	ACGT	2 cut(s)	67, 776
MaeIII	GTNAC	1 cut(s)	673
MalI	GATC	3 cut(s)	106, 442, 579
MboI	GATC	3 cut(s)	104, 440, 577
MboII	GAAGA	2 cut(s)	268, 271
MfeI	CAATTG	1 cut(s)	417
MflI	RGATCY	3 cut(s)	104, 440, 577
MhlI	GDGCHC	4 cut(s)	216, 250, 362, 873
MluCI	AATT	8 cut(s)	116, 160, 175, 313, 417, 495, 504, 849
MlyI	GAGTC	1 cut(s)	490
MmeI	TCCRAC	1 cut(s)	445
MnlI	CCTC	9 cut(s)	118, 218, 265, 328, 382, 521, 657, 747, 859
MseI	TTAA	2 cut(s)	758, 816
MspA1I	CMGCKG	1 cut(s)	434
MspR9I	CCNGG	1 cut(s)	340
MunI	CAATTG	1 cut(s)	417
MvaI	CCWGG	1 cut(s)	340
MvnI	CGCG	3 cut(s)	85, 168, 273
MwoI	GCNNNNNNNGC	2 cut(s)	78, 653
NdeII	GATC	3 cut(s)	104, 440, 577
NheI	GCTAGC	1 cut(s)	262
NlaIII	CATG	5 cut(s)	399, 474, 614, 647, 682
NlaIV	GGNNCC	4 cut(s)	106, 247, 579, 870
NmuCI	GTSAC	1 cut(s)	673
NspI	RCATGY	1 cut(s)	474
PaeI	GCATGC	1 cut(s)	474
PaeR7I	CTCGAG	1 cut(s)	209
PfoI	TCCNGGA	1 cut(s)	338
PkrI	GCNGC	1 cut(s)	655
PleI	GAGTC	1 cut(s)	489
PmaCI	CACGTG	1 cut(s)	68
PmlI	CACGTG	1 cut(s)	68
PpsI	GAGTC	1 cut(s)	489
Ppu21I	YACGTR	2 cut(s)	68, 777
Psp124BI	GAGCTC	1 cut(s)	216
Psp6I	CCWGG	1 cut(s)	338
PspCI	CACGTG	1 cut(s)	68
PspGI	CCWGG	1 cut(s)	338
PspN4I	GGNNCC	4 cut(s)	106, 247, 579, 870
PspPI	GGNCC	2 cut(s)	17, 33
PspXI	VCTCGAGB	1 cut(s)	209
PsuI	RGATCY	3 cut(s)	104, 440, 577
PvuII	CAGCTG	1 cut(s)	434
RsaI	GTAC	2 cut(s)	9, 779
RsaNI	GTAC	2 cut(s)	8, 778
SacI	GAGCTC	1 cut(s)	216
SaqAI	TTAA	2 cut(s)	758, 816
SatI	GCNGC	1 cut(s)	654
Sau3AI	GATC	3 cut(s)	104, 440, 577
Sau96I	GGNCC	2 cut(s)	17, 33
SchI	GAGTC	1 cut(s)	490
ScrFI	CCNGG	1 cut(s)	340
SduI	GDGCHC	4 cut(s)	216, 250, 362, 873
Sfr274I	CTCGAG	1 cut(s)	209
SinI	GGWCC	1 cut(s)	33
SlaI	CTCGAG	1 cut(s)	209
SmlI	CTYRAG	1 cut(s)	209
SmoI	CTYRAG	1 cut(s)	209
SphI	GCATGC	1 cut(s)	474
Sse9I	AATT	8 cut(s)	116, 160, 175, 313, 417, 495, 504, 849
SsiI	CCGC	5 cut(s)	83, 124, 168, 231, 271
SspMI	CTAG	3 cut(s)	251, 263, 500
SstI	GAGCTC	1 cut(s)	216
StyD4I	CCNGG	1 cut(s)	338
StyI	CCWWGG	1 cut(s)	551
TaaI	ACNGT	1 cut(s)	238
TaiI	ACGT	2 cut(s)	70, 779
TaqI	TCGA	2 cut(s)	210, 366
TasI	AATT	8 cut(s)	116, 160, 175, 313, 417, 495, 504, 849
Tru1I	TTAA	2 cut(s)	758, 816
Tru9I	TTAA	2 cut(s)	758, 816
TscAI	CASTG	1 cut(s)	117
TseFI	GTSAC	1 cut(s)	673
TseI	GCWGC	1 cut(s)	653
Tsp45I	GTSAC	1 cut(s)	673
TspDTI	ATGAA	2 cut(s)	215, 857
TspGWI	ACGGA	1 cut(s)	117
TspRI	CASTG	1 cut(s)	117
VpaK11BI	GGWCC	1 cut(s)	33
XapI	RAATTY	2 cut(s)	160, 849
XceI	RCATGY	1 cut(s)	474
XcmI	CCANNNNNNNNNTGG	1 cut(s)	27
XhoI	CTCGAG	1 cut(s)	209
XspI	CTAG	3 cut(s)	251, 263, 500

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.