Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0009957

Physical Location & Seq

Genomic Coordinates Forward (+)

13674323 .. 13677311

Gene Structure 2989 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G150900.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGAACTCTCGCGAGCTCGCTCTGGTCTCCACGGCCACTGTTTTCGGGGCCTTGGCCTCTGCGCTCGCTTGCCGCTTCTTACTTTCAAACCCTAAAAAGCAGTCTACCAAGCTTGATTCGTCTGAAAACGGCCCCGTCCCCAGGAAATACTCTTCTCAGAGCCCATTTGACCCCTCAAAACGCAAAGGATATTTGTCATGGGATGATTATTTCATGGCAATTGCATTTTTATCAGCTGAAAGATCCAAAGACCCTAACAGGCAGGTTGGAGCATGCTTGGTGAGTGAAAATGGGGTAATTCTAGGAATTGGGTATAATGGGTTCCCAAGAGGTTGTTCGGATGACAAGCTTCCTTGGGCAAAGAAATCCAGAACTGGGGATCCTTTGGAGACAAAGTATCCTTATGTTTGTCATGCTGAAGTCAATGCTATCCTAAACACCAACCATGCTTCTCCTGCTGGACAGAGGCTTTATGTGACCATGTTCCCCTGCAACGAGTGTGCCAAAATAATCATTCAGTCAGGAGTCTCTGAAGTTATATATTTTGTGGAAAAGCAGTTAAATAATCCAGATGTTGCCTACATTGCTTCTCACAAACTACTTTCATTGGCTGGTGTGAAAGTGTGTTTGTCCATGTACACATGCTGTGTGAAAAATTGGTCAGGAAACATCAACCACGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00240 ko01100 map00240 map01100

Pfam Domains

Protein Families

dCMP_cyt_deam_1

Protein Analysis

228

Amino Acids

24.88

Weight (kDa)

8.91

Isoelectric Point (pI)

43.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009957)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48540
fragaria_vesca	FvH4_5g08340 FvH4_5g08340 FvH4_5g08340 FvH4_5g08340 FvH4_5g08340
malus_domestica	MD14G1156900.v1.1
prunus_persica	Prupe.5G150900_v2.0.a1 Prupe.5G150900_v2.0.a1
pyrus_communis	pycom14g13040
rosa_chinensis	RchiOBHm_Chr7g0190121
rosa_laevigata	RLG00000004564
rosa_multiflora	Rmu_sc0000690.1_g000051 Rmu_sc0004886.1_g000013
rosa_roxburghii	Rroxscaffold_3G00264860
rosa_rugosa	Rorug06G0502400 Rorug06G0502500
rosa_samantha	Rh7AG108000 Rh7BG110300 Rh7DG111100
rosa_wichuraiana	Rw7G009330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	253
AccI	GTMKAC	1 cut(s)	104
AccII	CGCG	1 cut(s)	12
AciI	CCGC	1 cut(s)	73
AclWI	GGATC	3 cut(s)	237, 374, 387
AcoI	YGGCCR	1 cut(s)	33
AcuI	CTGAAG	2 cut(s)	438, 552
AfaI	GTAC	1 cut(s)	638
AfiI	CCNNNNNNNGG	2 cut(s)	141, 375
AgsI	TTSAA	1 cut(s)	87
AjnI	CCWGG	1 cut(s)	140
AjuI	GAANNNNNNNTTGG	2 cut(s)	319, 351
AloI	GAACNNNNNNTCC	2 cut(s)	364, 396
AluBI	AGCT	4 cut(s)	16, 112, 236, 349
AluI	AGCT	4 cut(s)	16, 112, 236, 349
Alw21I	GWGCWC	1 cut(s)	18
Alw26I	GTCTC	3 cut(s)	31, 383, 532
AlwI	GGATC	3 cut(s)	237, 374, 387
AoxI	GGCC	4 cut(s)	33, 48, 54, 130
AspLEI	GCGC	1 cut(s)	64
AspS9I	GGNCC	2 cut(s)	48, 131
AsuHPI	GGTGA	1 cut(s)	292
BamHI	GGATCC	1 cut(s)	379
BanII	GRGCYC	2 cut(s)	18, 164
Bbv12I	GWGCWC	1 cut(s)	18
BceAI	ACGGC	2 cut(s)	48, 145
BciT130I	CCWGG	1 cut(s)	142
BciVI	GTATCC	1 cut(s)	408
BcoDI	GTCTC	3 cut(s)	31, 383, 532
BfaI	CTAG	1 cut(s)	302
BfuAI	ACCTGC	1 cut(s)	253
BfuI	GTATCC	1 cut(s)	408
BisI	GCNGC	1 cut(s)	73
BlsI	GCNGC	1 cut(s)	74
Bme1390I	CCNGG	1 cut(s)	142
BmgT120I	GGNCC	2 cut(s)	48, 131
BmiI	GGNNCC	4 cut(s)	49, 133, 323, 381
BmrFI	CCNGG	1 cut(s)	142
BmrI	ACTGGG	1 cut(s)	384
BmuI	ACTGGG	1 cut(s)	384
BsaI	GGTCTC	1 cut(s)	31
BsaJI	CCNNGG	4 cut(s)	30, 51, 140, 353
BsaXI	ACNNNNNCTCC	2 cut(s)	380, 410
Bsc4I	CCNNNNNNNGG	2 cut(s)	141, 375
Bse1I	ACTGG	1 cut(s)	379
Bse3DI	GCAATG	1 cut(s)	582
BseBI	CCWGG	1 cut(s)	142
BseDI	CCNNGG	4 cut(s)	30, 51, 140, 353
BseGI	GGATG	2 cut(s)	208, 346
BseLI	CCNNNNNNNGG	2 cut(s)	141, 375
BseMI	GCAATG	1 cut(s)	582
BseMII	CTCAG	1 cut(s)	170
BseNI	ACTGG	1 cut(s)	379
Bsh1236I	CGCG	1 cut(s)	12
BshFI	GGCC	4 cut(s)	35, 50, 56, 132
BsiHKAI	GWGCWC	1 cut(s)	18
BslFI	GGGAC	1 cut(s)	122
BslI	CCNNNNNNNGG	2 cut(s)	141, 375
BsmAI	GTCTC	3 cut(s)	31, 383, 532
BsmFI	GGGAC	1 cut(s)	122
BsnI	GGCC	4 cut(s)	35, 50, 56, 132
Bso31I	GGTCTC	1 cut(s)	31
Bsp1286I	GDGCHC	2 cut(s)	18, 164
Bsp1407I	TGTACA	1 cut(s)	636
Bsp143I	GATC	2 cut(s)	242, 379
Bsp68I	TCGCGA	1 cut(s)	12
BspACI	CCGC	1 cut(s)	73
BspANI	GGCC	4 cut(s)	35, 50, 56, 132
BspCNI	CTCAG	1 cut(s)	169
BspFNI	CGCG	1 cut(s)	12
BspLI	GGNNCC	4 cut(s)	49, 133, 323, 381
BspMI	ACCTGC	1 cut(s)	253
BspPI	GGATC	3 cut(s)	237, 374, 387
BspTNI	GGTCTC	1 cut(s)	31
BsrDI	GCAATG	1 cut(s)	582
BsrGI	TGTACA	1 cut(s)	636
BsrI	ACTGG	1 cut(s)	379
BssECI	CCNNGG	4 cut(s)	30, 51, 140, 353
BssMI	GATC	2 cut(s)	242, 379
BssT1I	CCWWGG	2 cut(s)	51, 353
Bst2UI	CCWGG	1 cut(s)	142
Bst4CI	ACNGT	1 cut(s)	40
Bst6I	CTCTTC	1 cut(s)	157
BstAUI	TGTACA	1 cut(s)	636
BstC8I	GCNNGC	5 cut(s)	14, 18, 66, 70, 274
BstDEI	CTNAG	1 cut(s)	156
BstDSI	CCRYGG	1 cut(s)	30
BstF5I	GGATG	2 cut(s)	208, 346
BstFNI	CGCG	1 cut(s)	12
BstHHI	GCGC	1 cut(s)	64
BstKTI	GATC	2 cut(s)	245, 382
BstMAI	GTCTC	3 cut(s)	31, 383, 532
BstMBI	GATC	2 cut(s)	242, 379
BstMWI	GCNNNNNNNGC	2 cut(s)	455, 584
BstNI	CCWGG	1 cut(s)	142
BstNSI	RCATGY	2 cut(s)	276, 645
BstSCI	CCNGG	1 cut(s)	140
BstUI	CGCG	1 cut(s)	12
BstX2I	RGATCY	2 cut(s)	242, 379
BstYI	RGATCY	2 cut(s)	242, 379
BsuI	GTATCC	1 cut(s)	408
BsuRI	GGCC	4 cut(s)	35, 50, 56, 132
BtgI	CCRYGG	1 cut(s)	30
BtsCI	GGATG	2 cut(s)	208, 346
BtsIMutI	CAGTG	1 cut(s)	36
BtuMI	TCGCGA	1 cut(s)	12
BveI	ACCTGC	1 cut(s)	253
Cac8I	GCNNGC	5 cut(s)	14, 18, 66, 70, 274
CfoI	GCGC	1 cut(s)	64
Cfr13I	GGNCC	2 cut(s)	48, 131
Csp6I	GTAC	1 cut(s)	637
CviAII	CATG	9 cut(s)	198, 214, 273, 413, 446, 481, 634, 642, 681
CviQI	GTAC	1 cut(s)	637
DdeI	CTNAG	1 cut(s)	156
DpnI	GATC	2 cut(s)	244, 381
DpnII	GATC	2 cut(s)	242, 379
EaeI	YGGCCR	1 cut(s)	33
Eam1104I	CTCTTC	1 cut(s)	157
EarI	CTCTTC	1 cut(s)	157
Ecl136II	GAGCTC	1 cut(s)	16
Eco130I	CCWWGG	2 cut(s)	51, 353
Eco24I	GRGCYC	2 cut(s)	18, 164
Eco31I	GGTCTC	1 cut(s)	31
Eco53kI	GAGCTC	1 cut(s)	16
Eco57I	CTGAAG	2 cut(s)	438, 552
EcoICRI	GAGCTC	1 cut(s)	16
EcoO109I	RGGNCCY	1 cut(s)	48
EcoRII	CCWGG	1 cut(s)	140
EcoT14I	CCWWGG	2 cut(s)	51, 353
EcoT38I	GRGCYC	2 cut(s)	18, 164
ErhI	CCWWGG	2 cut(s)	51, 353
FaeI	CATG	9 cut(s)	201, 217, 276, 416, 449, 484, 637, 645, 684
FaqI	GGGAC	1 cut(s)	122
FatI	CATG	9 cut(s)	197, 213, 272, 412, 445, 480, 633, 641, 680
FblI	GTMKAC	1 cut(s)	104
Fnu4HI	GCNGC	1 cut(s)	73
FokI	GGATG	2 cut(s)	215, 353
FriOI	GRGCYC	2 cut(s)	18, 164
Fsp4HI	GCNGC	1 cut(s)	73
FspBI	CTAG	1 cut(s)	302
GlaI	GCGC	1 cut(s)	63
GluI	GCNGC	1 cut(s)	73
HaeIII	GGCC	4 cut(s)	35, 50, 56, 132
HhaI	GCGC	1 cut(s)	64
Hin1II	CATG	9 cut(s)	201, 217, 276, 416, 449, 484, 637, 645, 684
Hin6I	GCGC	1 cut(s)	62
HinP1I	GCGC	1 cut(s)	62
HindIII	AAGCTT	2 cut(s)	110, 347
HinfI	GANTC	2 cut(s)	116, 525
HphI	GGTGA	1 cut(s)	292
Hpy166II	GTNNAC	2 cut(s)	105, 639
Hpy188I	TCNGA	4 cut(s)	124, 159, 340, 532
Hpy188III	TCNNGA	5 cut(s)	11, 369, 522, 569, 663
Hpy8I	GTNNAC	2 cut(s)	105, 639
HpyCH4III	ACNGT	1 cut(s)	40
HpyCH4V	TGCA	2 cut(s)	224, 492
HpyF10VI	GCNNNNNNNGC	2 cut(s)	455, 584
HpyF3I	CTNAG	1 cut(s)	156
Hsp92II	CATG	9 cut(s)	201, 217, 276, 416, 449, 484, 637, 645, 684
HspAI	GCGC	1 cut(s)	62
Kzo9I	GATC	2 cut(s)	242, 379
LmnI	GCTCC	1 cut(s)	269
MaeI	CTAG	1 cut(s)	302
MaeIII	GTNAC	1 cut(s)	475
MalI	GATC	2 cut(s)	244, 381
MboI	GATC	2 cut(s)	242, 379
MboII	GAAGA	1 cut(s)	144
MfeI	CAATTG	1 cut(s)	219
MflI	RGATCY	2 cut(s)	242, 379
MhlI	GDGCHC	2 cut(s)	18, 164
MluCI	AATT	4 cut(s)	219, 297, 306, 655
MlyI	GAGTC	1 cut(s)	534
MmeI	TCCRAC	1 cut(s)	247
MnlI	CCTC	4 cut(s)	67, 184, 323, 459
MseI	TTAA	1 cut(s)	560
MspA1I	CMGCKG	1 cut(s)	236
MspR9I	CCNGG	1 cut(s)	142
MunI	CAATTG	1 cut(s)	219
MvaI	CCWGG	1 cut(s)	142
MvnI	CGCG	1 cut(s)	12
MwoI	GCNNNNNNNGC	2 cut(s)	455, 584
NdeII	GATC	2 cut(s)	242, 379
NlaIII	CATG	9 cut(s)	201, 217, 276, 416, 449, 484, 637, 645, 684
NlaIV	GGNNCC	4 cut(s)	49, 133, 323, 381
NmuCI	GTSAC	1 cut(s)	475
NruI	TCGCGA	1 cut(s)	12
NspI	RCATGY	2 cut(s)	276, 645
PaeI	GCATGC	1 cut(s)	276
PfeI	GAWTC	1 cut(s)	116
PkrI	GCNGC	1 cut(s)	74
PleI	GAGTC	1 cut(s)	533
PpsI	GAGTC	1 cut(s)	533
Psp124BI	GAGCTC	1 cut(s)	18
Psp6I	CCWGG	1 cut(s)	140
PspGI	CCWGG	1 cut(s)	140
PspN4I	GGNNCC	4 cut(s)	49, 133, 323, 381
PspPI	GGNCC	2 cut(s)	48, 131
PsrI	GAACNNNNNNTAC	2 cut(s)	305, 337
PsuI	RGATCY	2 cut(s)	242, 379
PvuII	CAGCTG	1 cut(s)	236
RruI	TCGCGA	1 cut(s)	12
RsaI	GTAC	1 cut(s)	638
RsaNI	GTAC	1 cut(s)	637
SacI	GAGCTC	1 cut(s)	18
SaqAI	TTAA	1 cut(s)	560
SatI	GCNGC	1 cut(s)	73
Sau3AI	GATC	2 cut(s)	242, 379
Sau96I	GGNCC	2 cut(s)	48, 131
SchI	GAGTC	1 cut(s)	534
ScrFI	CCNGG	1 cut(s)	142
SduI	GDGCHC	2 cut(s)	18, 164
SetI	ASST	6 cut(s)	18, 114, 238, 267, 334, 351
SphI	GCATGC	1 cut(s)	276
Sse9I	AATT	4 cut(s)	219, 297, 306, 655
SsiI	CCGC	1 cut(s)	73
SspMI	CTAG	1 cut(s)	302
SstI	GAGCTC	1 cut(s)	18
StyD4I	CCNGG	1 cut(s)	140
StyI	CCWWGG	2 cut(s)	51, 353
TaaI	ACNGT	1 cut(s)	40
TasI	AATT	4 cut(s)	219, 297, 306, 655
TatI	WGTACW	1 cut(s)	636
TauI	GCSGC	1 cut(s)	75
TfiI	GAWTC	1 cut(s)	116
Tru1I	TTAA	1 cut(s)	560
Tru9I	TTAA	1 cut(s)	560
TscAI	CASTG	1 cut(s)	43
TseFI	GTSAC	1 cut(s)	475
Tsp45I	GTSAC	1 cut(s)	475
TspDTI	ATGAA	3 cut(s)	17, 202, 594
TspRI	CASTG	1 cut(s)	43
XceI	RCATGY	2 cut(s)	276, 645
XmiI	GTMKAC	1 cut(s)	104
XspI	CTAG	1 cut(s)	302

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.