FvH4_5g08340

Deoxycytidylate

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0009957
Physical Location & Seq
Reverse (-)
4851569 .. 4854438
2870 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g08340.t3

Sequence Viewer

Length: 426 bp
ATGCTTGGTGAGTCCAAATGGTATCATTCTAGTCTGATCTGTCTATCCTCAGGGATTGGCTATAATGGGTTCCCGAGGGGTTGTTCGGACGACAAGCTTCCTTGGGCAAAGATGTCCAGAACTGGGGATCCTTTAGAGACGAAATATCCTTATGTTTGTCATGCTGAAGTTAATGCAATCCTAAACACCAATCATGCTTCTGCTTCTGGACAGACGCTTTATGTGACCATGTTCCCCTGCAATGAGTGTGCCAAGATAATCATTCAGTCAGGAGTTTCTGAAGTTGTATATTTTGTGGAGAAGAGGTTAAACAATCCAGATATCACGTATATTGCTTCTCACAAGCTACTATCAATGGCTGGTGTGAAAGTCAGGAAACATCAACCACAAATGAACCAAATTGCAATCAACTTTGAGGAGCCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00240 ko01100 map00240 map01100
Pfam Domains
Protein Families
dCMP_cyt_deam_1

Protein Analysis

142

Amino Acids

15.74

Weight (kDa)

7.66

Isoelectric Point (pI)

35.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
dCMP_cyt_deam_1 PF00383 66 - 150 6.5e-12 Cytidine and deoxycytidylate deaminase zinc-binding region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 122, 135
AcuI CTGAAG 2 cut(s) 186, 300
AfiI CCNNNNNNNGG 1 cut(s) 123
AloI GAACNNNNNNTCC 2 cut(s) 112, 144
AluBI AGCT 2 cut(s) 97, 346
AluI AGCT 2 cut(s) 97, 346
Alw26I GTCTC 1 cut(s) 131
AlwI GGATC 2 cut(s) 122, 135
Ama87I CYCGRG 1 cut(s) 73
AsuHPI GGTGA 1 cut(s) 20
AvaI CYCGRG 1 cut(s) 73
AxyI CCTNAGG 1 cut(s) 49
BamHI GGATCC 1 cut(s) 127
BanII GRGCYC 1 cut(s) 423
BcoDI GTCTC 1 cut(s) 131
BfaI CTAG 1 cut(s) 30
BmeT110I CYCGRG 1 cut(s) 73
BmiI GGNNCC 3 cut(s) 71, 129, 420
BmrI ACTGGG 1 cut(s) 132
BmuI ACTGGG 1 cut(s) 132
BsaAI YACGTR 1 cut(s) 327
BsaJI CCNNGG 2 cut(s) 74, 101
BsaXI ACNNNNNCTCC 2 cut(s) 290, 320
Bsc4I CCNNNNNNNGG 1 cut(s) 123
Bse1I ACTGG 1 cut(s) 127
Bse21I CCTNAGG 1 cut(s) 49
Bse3DI GCAATG 1 cut(s) 247
BseDI CCNNGG 2 cut(s) 74, 101
BseLI CCNNNNNNNGG 1 cut(s) 123
BseMI GCAATG 1 cut(s) 247
BseMII CTCAG 1 cut(s) 63
BseNI ACTGG 1 cut(s) 127
BsiHKCI CYCGRG 1 cut(s) 73
BslI CCNNNNNNNGG 1 cut(s) 123
BsmAI GTCTC 1 cut(s) 131
BsmBI CGTCTC 1 cut(s) 131
BsoBI CYCGRG 1 cut(s) 73
Bsp1286I GDGCHC 1 cut(s) 423
Bsp143I GATC 2 cut(s) 36, 127
BspCNI CTCAG 1 cut(s) 62
BspLI GGNNCC 3 cut(s) 71, 129, 420
BspPI GGATC 2 cut(s) 122, 135
BsrDI GCAATG 1 cut(s) 247
BsrI ACTGG 1 cut(s) 127
BssECI CCNNGG 2 cut(s) 74, 101
BssMI GATC 2 cut(s) 36, 127
BssT1I CCWWGG 1 cut(s) 101
Bst6I CTCTTC 1 cut(s) 296
BstBAI YACGTR 1 cut(s) 327
BstDEI CTNAG 1 cut(s) 49
BstKTI GATC 2 cut(s) 39, 130
BstMAI GTCTC 1 cut(s) 131
BstMBI GATC 2 cut(s) 36, 127
BstX2I RGATCY 1 cut(s) 127
BstYI RGATCY 1 cut(s) 127
Bsu36I CCTNAGG 1 cut(s) 49
CseI GACGC 1 cut(s) 223
CviAII CATG 3 cut(s) 161, 194, 229
CviJI RGCY 5 cut(s) 60, 97, 346, 359, 421
CviKI_1 RGCY 5 cut(s) 60, 97, 346, 359, 421
DdeI CTNAG 1 cut(s) 49
DpnI GATC 2 cut(s) 38, 129
DpnII GATC 2 cut(s) 36, 127
Eam1104I CTCTTC 1 cut(s) 296
EarI CTCTTC 1 cut(s) 296
Eco130I CCWWGG 1 cut(s) 101
Eco24I GRGCYC 1 cut(s) 423
Eco32I GATATC 1 cut(s) 322
Eco57I CTGAAG 2 cut(s) 186, 300
Eco81I CCTNAGG 1 cut(s) 49
Eco88I CYCGRG 1 cut(s) 73
EcoRV GATATC 1 cut(s) 322
EcoT14I CCWWGG 1 cut(s) 101
EcoT38I GRGCYC 1 cut(s) 423
ErhI CCWWGG 1 cut(s) 101
Esp3I CGTCTC 1 cut(s) 131
FaeI CATG 3 cut(s) 164, 197, 232
FaiI YATR 8 cut(s) 63, 153, 162, 195, 222, 230, 289, 330
FatI CATG 3 cut(s) 160, 193, 228
FriOI GRGCYC 1 cut(s) 423
FspBI CTAG 1 cut(s) 30
HgaI GACGC 1 cut(s) 223
Hin1II CATG 3 cut(s) 164, 197, 232
HindIII AAGCTT 1 cut(s) 95
HinfI GANTC 1 cut(s) 11
HphI GGTGA 1 cut(s) 20
Hpy188I TCNGA 3 cut(s) 36, 88, 280
Hpy188III TCNNGA 6 cut(s) 73, 117, 207, 270, 317, 373
HpyCH4IV ACGT 1 cut(s) 326
HpyCH4V TGCA 3 cut(s) 176, 240, 404
HpyF3I CTNAG 1 cut(s) 49
HpySE526I ACGT 1 cut(s) 326
Hsp92II CATG 3 cut(s) 164, 197, 232
Kzo9I GATC 2 cut(s) 36, 127
LmnI GCTCC 1 cut(s) 418
LpnPI CCDG 9 cut(s) 36, 108, 130, 192, 250, 255, 330, 345, 358
MaeI CTAG 1 cut(s) 30
MaeII ACGT 1 cut(s) 326
MaeIII GTNAC 1 cut(s) 223
MalI GATC 2 cut(s) 38, 129
MboI GATC 2 cut(s) 36, 127
MboII GAAGA 1 cut(s) 313
MflI RGATCY 1 cut(s) 127
MhlI GDGCHC 1 cut(s) 423
MluCI AATT 1 cut(s) 399
MlyI GAGTC 1 cut(s) 20
MnlI CCTC 4 cut(s) 58, 69, 297, 409
MseI TTAA 2 cut(s) 171, 308
NdeII GATC 2 cut(s) 36, 127
NlaIII CATG 3 cut(s) 164, 197, 232
NlaIV GGNNCC 3 cut(s) 71, 129, 420
NmuCI GTSAC 1 cut(s) 223
PleI GAGTC 1 cut(s) 19
PpsI GAGTC 1 cut(s) 19
Ppu21I YACGTR 1 cut(s) 327
PspN4I GGNNCC 3 cut(s) 71, 129, 420
PsuI RGATCY 1 cut(s) 127
SaqAI TTAA 2 cut(s) 171, 308
Sau3AI GATC 2 cut(s) 36, 127
SchI GAGTC 1 cut(s) 20
SduI GDGCHC 1 cut(s) 423
SetI ASST 4 cut(s) 99, 308, 329, 348
Sse9I AATT 1 cut(s) 399
SspMI CTAG 1 cut(s) 30
StyI CCWWGG 1 cut(s) 101
TaiI ACGT 1 cut(s) 329
TasI AATT 1 cut(s) 399
Tru1I TTAA 2 cut(s) 171, 308
Tru9I TTAA 2 cut(s) 171, 308
TseFI GTSAC 1 cut(s) 223
Tsp45I GTSAC 1 cut(s) 223
TspDTI ATGAA 1 cut(s) 407
XspI CTAG 1 cut(s) 30
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.