Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000690.1

Orthogroup ID

OG0009957

Physical Location & Seq

Genomic Coordinates Forward (+)

196801 .. 198325

Gene Structure 1525 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000690.1_g000051.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

atggtggaaagctcaggtggtggtacggcaggcattccgcaaataatcaaacaaaaaaaaccgggatggctacatcagaatgaaatatgtcaatatattcaagaccacaacagctatgttaccactaagcaaccaccatttaagccaccaagtggatcaattattctttataatagaaatgtggtgaagggtttcagaaatgatgcccatgaatgggaaaaaaagaaggaatcgcatgcaactctaaaggtaaccttatatatgttacgcaatgcgacaaatgaacgtcctaacaaaagacctggcttagaggttcttcaatttgcgaattgtgggtgcaatggttttaccatgtgtgaccgcaatggtgatgatgagactcaatctattcaaacagatgagagctatcaagactttctaagtctgcttgagataaatgatgaaaacatgacatatgcaccccaaaatggtagactagagacaaatgatgtggagataaaagatgagaatgcggagagttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

173

Amino Acids

19.65

Weight (kDa)

5.25

Isoelectric Point (pI)

41.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009957)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48540
fragaria_vesca	FvH4_5g08340 FvH4_5g08340 FvH4_5g08340 FvH4_5g08340 FvH4_5g08340
malus_domestica	MD14G1156900.v1.1
prunus_persica	Prupe.5G150900_v2.0.a1 Prupe.5G150900_v2.0.a1
pyrus_communis	pycom14g13040
rosa_chinensis	RchiOBHm_Chr7g0190121
rosa_laevigata	RLG00000004564
rosa_multiflora	Rmu_sc0000690.1_g000051 Rmu_sc0004886.1_g000013
rosa_roxburghii	Rroxscaffold_3G00264860
rosa_rugosa	Rorug06G0502400 Rorug06G0502500
rosa_samantha	Rh7AG108000 Rh7BG110300 Rh7DG111100
rosa_wichuraiana	Rw7G009330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	171
AccB7I	CCANNNNNTGG	1 cut(s)	152
AccI	GTMKAC	1 cut(s)	472
AciI	CCGC	3 cut(s)	38, 361, 512
AclWI	GGATC	1 cut(s)	163
AdeI	CACNNNGTG	1 cut(s)	152
AfaI	GTAC	1 cut(s)	25
AfiI	CCNNNNNNNGG	4 cut(s)	152, 213, 214, 467
AgsI	TTSAA	3 cut(s)	101, 320, 392
AjnI	CCWGG	1 cut(s)	301
AluBI	AGCT	3 cut(s)	12, 114, 405
AluI	AGCT	3 cut(s)	12, 114, 405
Alw26I	GTCTC	2 cut(s)	371, 473
AlwI	GGATC	1 cut(s)	163
Asp700I	GAANNNNTTC	1 cut(s)	191
AsuC2I	CCSGG	1 cut(s)	63
AsuHPI	GGTGA	2 cut(s)	196, 380
BccI	CCATC	1 cut(s)	60
BceAI	ACGGC	1 cut(s)	42
BciT130I	CCWGG	1 cut(s)	303
BcnI	CCSGG	1 cut(s)	63
BcoDI	GTCTC	2 cut(s)	371, 473
BfaI	CTAG	1 cut(s)	476
Bme1390I	CCNGG	2 cut(s)	63, 303
BmrFI	CCNGG	2 cut(s)	63, 303
BmsI	GCATC	1 cut(s)	193
Bpu10I	CCTNAGC	1 cut(s)	13
BpuEI	CTTGAG	1 cut(s)	449
BpuMI	CCSGG	1 cut(s)	63
Bsc4I	CCNNNNNNNGG	4 cut(s)	152, 213, 214, 467
Bse3DI	GCAATG	3 cut(s)	277, 346, 370
BseBI	CCWGG	1 cut(s)	303
BseGI	GGATG	1 cut(s)	71
BseLI	CCNNNNNNNGG	4 cut(s)	152, 213, 214, 467
BseMI	GCAATG	3 cut(s)	277, 346, 370
BseMII	CTCAG	1 cut(s)	27
BsiSI	CCGG	1 cut(s)	62
BslI	CCNNNNNNNGG	4 cut(s)	152, 213, 214, 467
BsmAI	GTCTC	2 cut(s)	371, 473
BsmI	GAATGC	2 cut(s)	33, 514
Bsp143I	GATC	1 cut(s)	155
BspACI	CCGC	3 cut(s)	38, 361, 512
BspCNI	CTCAG	1 cut(s)	26
BspPI	GGATC	1 cut(s)	163
BsrDI	GCAATG	3 cut(s)	277, 346, 370
BssMI	GATC	1 cut(s)	155
Bst2UI	CCWGG	1 cut(s)	303
BstC8I	GCNNGC	2 cut(s)	31, 237
BstDEI	CTNAG	4 cut(s)	13, 126, 307, 419
BstEII	GGTNACC	1 cut(s)	250
BstF5I	GGATG	1 cut(s)	71
BstKTI	GATC	1 cut(s)	158
BstMAI	GTCTC	2 cut(s)	371, 473
BstMBI	GATC	1 cut(s)	155
BstNI	CCWGG	1 cut(s)	303
BstNSI	RCATGY	1 cut(s)	239
BstPI	GGTNACC	1 cut(s)	250
BstSCI	CCNGG	2 cut(s)	61, 301
BtsCI	GGATG	1 cut(s)	71
Cac8I	GCNNGC	2 cut(s)	31, 237
Csp6I	GTAC	1 cut(s)	24
CspCI	CAANNNNNGTGG	2 cut(s)	471, 506
CviAII	CATG	4 cut(s)	209, 236, 352, 448
CviJI	RGCY	6 cut(s)	12, 70, 114, 145, 306, 405
CviKI_1	RGCY	6 cut(s)	12, 70, 114, 145, 306, 405
CviQI	GTAC	1 cut(s)	24
DdeI	CTNAG	4 cut(s)	13, 126, 307, 419
DpnI	GATC	1 cut(s)	157
DpnII	GATC	1 cut(s)	155
DraIII	CACNNNGTG	1 cut(s)	152
Eco91I	GGTNACC	1 cut(s)	250
EcoO65I	GGTNACC	1 cut(s)	250
EcoRII	CCWGG	1 cut(s)	301
FaeI	CATG	4 cut(s)	212, 239, 355, 451
FalI	AAGNNNNNCTT	2 cut(s)	239, 271
FatI	CATG	4 cut(s)	208, 235, 351, 447
FauNDI	CATATG	1 cut(s)	454
FblI	GTMKAC	1 cut(s)	472
FokI	GGATG	1 cut(s)	78
FspBI	CTAG	1 cut(s)	476
HapII	CCGG	1 cut(s)	62
Hin1II	CATG	4 cut(s)	212, 239, 355, 451
HinfI	GANTC	2 cut(s)	230, 379
HpaII	CCGG	1 cut(s)	62
HphI	GGTGA	2 cut(s)	196, 380
Hpy166II	GTNNAC	1 cut(s)	473
Hpy188I	TCNGA	2 cut(s)	78, 197
Hpy188III	TCNNGA	2 cut(s)	101, 410
Hpy8I	GTNNAC	1 cut(s)	473
HpyAV	CCTTC	2 cut(s)	181, 220
HpyCH4IV	ACGT	1 cut(s)	286
HpyCH4V	TGCA	3 cut(s)	239, 339, 458
HpyF3I	CTNAG	4 cut(s)	13, 126, 307, 419
HpySE526I	ACGT	1 cut(s)	286
Hsp92II	CATG	4 cut(s)	212, 239, 355, 451
Kzo9I	GATC	1 cut(s)	155
LpnPI	CCDG	4 cut(s)	15, 75, 288, 315
LweI	GCATC	1 cut(s)	193
MaeI	CTAG	1 cut(s)	476
MaeII	ACGT	1 cut(s)	286
MaeIII	GTNAC	4 cut(s)	118, 250, 264, 356
MalI	GATC	1 cut(s)	157
MboI	GATC	1 cut(s)	155
MboII	GAAGA	1 cut(s)	308
MluCI	AATT	3 cut(s)	159, 320, 328
MlyI	GAGTC	1 cut(s)	373
MnlI	CCTC	1 cut(s)	304
MroXI	GAANNNNTTC	1 cut(s)	191
MseI	TTAA	1 cut(s)	141
MslI	CAYNNNNRTG	1 cut(s)	78
MspI	CCGG	1 cut(s)	62
MspR9I	CCNGG	2 cut(s)	63, 303
Mva1269I	GAATGC	2 cut(s)	33, 514
MvaI	CCWGG	1 cut(s)	303
NciI	CCSGG	1 cut(s)	63
NdeI	CATATG	1 cut(s)	454
NdeII	GATC	1 cut(s)	155
NlaIII	CATG	4 cut(s)	212, 239, 355, 451
NmuCI	GTSAC	1 cut(s)	356
NspI	RCATGY	1 cut(s)	239
PaeI	GCATGC	1 cut(s)	239
PctI	GAATGC	2 cut(s)	33, 514
PdmI	GAANNNNTTC	1 cut(s)	191
PfeI	GAWTC	1 cut(s)	230
PflMI	CCANNNNNTGG	1 cut(s)	152
PleI	GAGTC	1 cut(s)	373
PpsI	GAGTC	1 cut(s)	373
PsiI	TTATAA	1 cut(s)	171
Psp6I	CCWGG	1 cut(s)	301
PspEI	GGTNACC	1 cut(s)	250
PspGI	CCWGG	1 cut(s)	301
RsaI	GTAC	1 cut(s)	25
RsaNI	GTAC	1 cut(s)	24
RseI	CAYNNNNRTG	1 cut(s)	78
SaqAI	TTAA	1 cut(s)	141
Sau3AI	GATC	1 cut(s)	155
SchI	GAGTC	1 cut(s)	373
ScrFI	CCNGG	2 cut(s)	63, 303
SetI	ASST	9 cut(s)	14, 19, 116, 252, 257, 289, 304, 315, 407
SfaNI	GCATC	1 cut(s)	193
SmiMI	CAYNNNNRTG	1 cut(s)	78
SmlI	CTYRAG	1 cut(s)	428
SmoI	CTYRAG	1 cut(s)	428
SphI	GCATGC	1 cut(s)	239
Sse9I	AATT	3 cut(s)	159, 320, 328
SsiI	CCGC	3 cut(s)	38, 361, 512
SspMI	CTAG	1 cut(s)	476
StyD4I	CCNGG	2 cut(s)	61, 301
TaiI	ACGT	1 cut(s)	289
TasI	AATT	3 cut(s)	159, 320, 328
TfiI	GAWTC	1 cut(s)	230
Tru1I	TTAA	1 cut(s)	141
Tru9I	TTAA	1 cut(s)	141
TseFI	GTSAC	1 cut(s)	356
Tsp45I	GTSAC	1 cut(s)	356
TspDTI	ATGAA	4 cut(s)	96, 225, 297, 456
Van91I	CCANNNNNTGG	1 cut(s)	152
XceI	RCATGY	1 cut(s)	239
XmiI	GTMKAC	1 cut(s)	472
XmnI	GAANNNNTTC	1 cut(s)	191
XspI	CTAG	1 cut(s)	476

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.