Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0009957

Physical Location & Seq

Genomic Coordinates Forward (+)

8511553 .. 8514668

Gene Structure 3116 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG108000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGAACTCTCGCGAGCTCACTCTGGTCTCCACCGCCACCGTCATCGGTGCCCTAGCCTCTGCGCTAGCCATCCGCGTCTTCTTCACAAAACCTAAGAAGCAGTCCCCAAAACTCAATTCCTCGCAAAACGGCGTCGTTTCCAGGAAGTGCTGTTATCAGAGCCCTTTTGACCCCTCAAAACGCAAAGGGTATTTGACATGGGACGATTACTTTATGGCAATTGCGTTTTTATCAGCTGAAAGATCCAAAGACCCTAACAGGCAGGTTGGAGCATGCTTGGTGAGTCAGAGTGGTATAATTCTAGGAATTGGGTATAATGGTTTCCCAAGAGGTTGTTCGGACGACAAGCTCCCTTGGGCAAAGATATCCAGAACTGGGGATCCTTTGGAGACAAAATATCCATATGTTTGTCATGCTGAAGTCAATGCAATCCTAAACACCAATCATGCTTCTGCTGCTGGACAGAGGCTTTATGTGACCATGTTCCCCTGCAATGAGTGTGCCAAGATAATAATTCAGGTTCATCACTCTGTTCTCTTTTGTTATCGTTTATGGTACATGCAACATAGATGCCCTTGGTCGTGTCATTCTCTGCTACAACCCACAATCGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00240 ko01100 map00240 map01100

Pfam Domains

Protein Families

dCMP_cyt_deam_1

Protein Analysis

204

Amino Acids

22.86

Weight (kDa)

9.2

Isoelectric Point (pI)

43.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
dCMP_cyt_deam_1	PF00383	66 - 176	1.4e-21	Cytidine and deoxycytidylate deaminase zinc-binding region
MafB19-deam	PF14437	67 - 173	4.8e-09	MafB19-like deaminase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0009957)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48540
fragaria_vesca	FvH4_5g08340 FvH4_5g08340 FvH4_5g08340 FvH4_5g08340 FvH4_5g08340
malus_domestica	MD14G1156900.v1.1
prunus_persica	Prupe.5G150900_v2.0.a1 Prupe.5G150900_v2.0.a1
pyrus_communis	pycom14g13040
rosa_chinensis	RchiOBHm_Chr7g0190121
rosa_laevigata	RLG00000004564
rosa_multiflora	Rmu_sc0000690.1_g000051 Rmu_sc0004886.1_g000013
rosa_roxburghii	Rroxscaffold_3G00264860
rosa_rugosa	Rorug06G0502400 Rorug06G0502500
rosa_samantha	Rh7AG108000 Rh7BG110300 Rh7DG111100
rosa_wichuraiana	Rw7G009330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	253
AccB1I	GGYRCC	1 cut(s)	47
AccII	CGCG	2 cut(s)	12, 75
AciI	CCGC	2 cut(s)	33, 73
AclWI	GGATC	3 cut(s)	237, 374, 387
AcuI	CTGAAG	1 cut(s)	438
AcyI	GRCGYC	1 cut(s)	132
AfaI	GTAC	1 cut(s)	557
AfiI	CCNNNNNNNGG	1 cut(s)	375
AjnI	CCWGG	1 cut(s)	140
AjuI	GAANNNNNNNTTGG	4 cut(s)	100, 132, 319, 351
AloI	GAACNNNNNNTCC	2 cut(s)	364, 396
AluBI	AGCT	3 cut(s)	16, 236, 349
AluI	AGCT	3 cut(s)	16, 236, 349
Alw21I	GWGCWC	1 cut(s)	18
Alw26I	GTCTC	2 cut(s)	31, 383
AlwI	GGATC	3 cut(s)	237, 374, 387
ApeKI	GCWGC	1 cut(s)	455
AspLEI	GCGC	1 cut(s)	64
AsuHPI	GGTGA	1 cut(s)	292
AsuNHI	GCTAGC	1 cut(s)	64
BaeGI	GKGCMC	1 cut(s)	52
BamHI	GGATCC	1 cut(s)	379
BanI	GGYRCC	1 cut(s)	47
BanII	GRGCYC	2 cut(s)	18, 164
BbsI	GAAGAC	1 cut(s)	70
Bbv12I	GWGCWC	1 cut(s)	18
BbvI	GCAGC	1 cut(s)	442
BccI	CCATC	1 cut(s)	77
BceAI	ACGGC	1 cut(s)	145
BciT130I	CCWGG	1 cut(s)	142
BcoDI	GTCTC	2 cut(s)	31, 383
BfaI	CTAG	3 cut(s)	53, 65, 302
BfuAI	ACCTGC	1 cut(s)	253
BisI	GCNGC	1 cut(s)	456
BlsI	GCNGC	1 cut(s)	457
Bme1390I	CCNGG	1 cut(s)	142
BmiI	GGNNCC	2 cut(s)	49, 381
BmrFI	CCNGG	1 cut(s)	142
BmrI	ACTGGG	1 cut(s)	384
BmsI	GCATC	1 cut(s)	560
BmtI	GCTAGC	1 cut(s)	68
BmuI	ACTGGG	1 cut(s)	384
BpiI	GAAGAC	1 cut(s)	70
BsaHI	GRCGYC	1 cut(s)	132
BsaI	GGTCTC	1 cut(s)	31
BsaJI	CCNNGG	2 cut(s)	353, 575
Bsc4I	CCNNNNNNNGG	1 cut(s)	375
Bse1I	ACTGG	1 cut(s)	379
Bse3DI	GCAATG	1 cut(s)	499
BseBI	CCWGG	1 cut(s)	142
BseDI	CCNNGG	2 cut(s)	353, 575
BseGI	GGATG	1 cut(s)	69
BseLI	CCNNNNNNNGG	1 cut(s)	375
BseMI	GCAATG	1 cut(s)	499
BseNI	ACTGG	1 cut(s)	379
BseSI	GKGCMC	1 cut(s)	52
BseXI	GCAGC	1 cut(s)	442
Bsh1236I	CGCG	2 cut(s)	12, 75
BshNI	GGYRCC	1 cut(s)	47
BsiHKAI	GWGCWC	1 cut(s)	18
BslFI	GGGAC	2 cut(s)	88, 215
BslI	CCNNNNNNNGG	1 cut(s)	375
BsmAI	GTCTC	2 cut(s)	31, 383
BsmFI	GGGAC	2 cut(s)	88, 215
Bso31I	GGTCTC	1 cut(s)	31
Bsp1286I	GDGCHC	3 cut(s)	18, 52, 164
Bsp143I	GATC	2 cut(s)	242, 379
Bsp68I	TCGCGA	1 cut(s)	12
BspACI	CCGC	2 cut(s)	33, 73
BspFNI	CGCG	2 cut(s)	12, 75
BspLI	GGNNCC	2 cut(s)	49, 381
BspMI	ACCTGC	1 cut(s)	253
BspOI	GCTAGC	1 cut(s)	68
BspPI	GGATC	3 cut(s)	237, 374, 387
BspT107I	GGYRCC	1 cut(s)	47
BspTNI	GGTCTC	1 cut(s)	31
BsrDI	GCAATG	1 cut(s)	499
BsrI	ACTGG	1 cut(s)	379
BssECI	CCNNGG	2 cut(s)	353, 575
BssMI	GATC	2 cut(s)	242, 379
BssNI	GRCGYC	1 cut(s)	132
BssT1I	CCWWGG	2 cut(s)	353, 575
Bst2UI	CCWGG	1 cut(s)	142
Bst4CI	ACNGT	1 cut(s)	40
BstACI	GRCGYC	1 cut(s)	132
BstC8I	GCNNGC	3 cut(s)	14, 66, 274
BstDEI	CTNAG	1 cut(s)	93
BstF5I	GGATG	1 cut(s)	69
BstFNI	CGCG	2 cut(s)	12, 75
BstHHI	GCGC	1 cut(s)	64
BstKTI	GATC	2 cut(s)	245, 382
BstMAI	GTCTC	2 cut(s)	31, 383
BstMBI	GATC	2 cut(s)	242, 379
BstMWI	GCNNNNNNNGC	1 cut(s)	455
BstNI	CCWGG	1 cut(s)	142
BstNSI	RCATGY	2 cut(s)	276, 562
BstSCI	CCNGG	1 cut(s)	140
BstSLI	GKGCMC	1 cut(s)	52
BstUI	CGCG	2 cut(s)	12, 75
BstV1I	GCAGC	1 cut(s)	442
BstV2I	GAAGAC	1 cut(s)	70
BstX2I	RGATCY	2 cut(s)	242, 379
BstYI	RGATCY	2 cut(s)	242, 379
BtsCI	GGATG	1 cut(s)	69
BtuMI	TCGCGA	1 cut(s)	12
BveI	ACCTGC	1 cut(s)	253
Cac8I	GCNNGC	3 cut(s)	14, 66, 274
CfoI	GCGC	1 cut(s)	64
CseI	GACGC	2 cut(s)	64, 121
Csp6I	GTAC	1 cut(s)	556
CviAII	CATG	6 cut(s)	198, 273, 413, 446, 481, 559
CviJI	RGCY	7 cut(s)	16, 56, 68, 162, 236, 349, 469
CviKI_1	RGCY	7 cut(s)	16, 56, 68, 162, 236, 349, 469
CviQI	GTAC	1 cut(s)	556
DdeI	CTNAG	1 cut(s)	93
DpnI	GATC	2 cut(s)	244, 381
DpnII	GATC	2 cut(s)	242, 379
Ecl136II	GAGCTC	1 cut(s)	16
Eco130I	CCWWGG	2 cut(s)	353, 575
Eco24I	GRGCYC	2 cut(s)	18, 164
Eco31I	GGTCTC	1 cut(s)	31
Eco32I	GATATC	1 cut(s)	366
Eco53kI	GAGCTC	1 cut(s)	16
Eco57I	CTGAAG	1 cut(s)	438
EcoICRI	GAGCTC	1 cut(s)	16
EcoRII	CCWGG	1 cut(s)	140
EcoRV	GATATC	1 cut(s)	366
EcoT14I	CCWWGG	2 cut(s)	353, 575
EcoT38I	GRGCYC	2 cut(s)	18, 164
ErhI	CCWWGG	2 cut(s)	353, 575
FaeI	CATG	6 cut(s)	201, 276, 416, 449, 484, 562
FaqI	GGGAC	2 cut(s)	88, 215
FatI	CATG	6 cut(s)	197, 272, 412, 445, 480, 558
FauNDI	CATATG	1 cut(s)	403
Fnu4HI	GCNGC	1 cut(s)	456
FokI	GGATG	1 cut(s)	56
FriOI	GRGCYC	2 cut(s)	18, 164
Fsp4HI	GCNGC	1 cut(s)	456
FspBI	CTAG	3 cut(s)	53, 65, 302
GlaI	GCGC	1 cut(s)	63
GluI	GCNGC	1 cut(s)	456
HgaI	GACGC	2 cut(s)	64, 121
HhaI	GCGC	1 cut(s)	64
Hin1I	GRCGYC	1 cut(s)	132
Hin1II	CATG	6 cut(s)	201, 276, 416, 449, 484, 562
Hin6I	GCGC	1 cut(s)	62
HinP1I	GCGC	1 cut(s)	62
HinfI	GANTC	1 cut(s)	283
HphI	GGTGA	1 cut(s)	292
Hpy188I	TCNGA	3 cut(s)	159, 288, 340
Hpy188III	TCNNGA	2 cut(s)	11, 369
Hpy99I	CGWCG	1 cut(s)	137
HpyCH4III	ACNGT	1 cut(s)	40
HpyCH4V	TGCA	3 cut(s)	428, 492, 562
HpyF10VI	GCNNNNNNNGC	1 cut(s)	455
HpyF3I	CTNAG	1 cut(s)	93
Hsp92I	GRCGYC	1 cut(s)	132
Hsp92II	CATG	6 cut(s)	201, 276, 416, 449, 484, 562
HspAI	GCGC	1 cut(s)	62
Kzo9I	GATC	2 cut(s)	242, 379
LmnI	GCTCC	2 cut(s)	269, 354
Lsp1109I	GCAGC	1 cut(s)	442
LweI	GCATC	1 cut(s)	560
MaeI	CTAG	3 cut(s)	53, 65, 302
MaeIII	GTNAC	1 cut(s)	475
MalI	GATC	2 cut(s)	244, 381
MboI	GATC	2 cut(s)	242, 379
MboII	GAAGA	2 cut(s)	70, 73
MfeI	CAATTG	1 cut(s)	219
MflI	RGATCY	2 cut(s)	242, 379
MhlI	GDGCHC	3 cut(s)	18, 52, 164
MluCI	AATT	5 cut(s)	115, 219, 297, 306, 513
MlyI	GAGTC	1 cut(s)	292
MmeI	TCCRAC	1 cut(s)	247
MnlI	CCTC	5 cut(s)	67, 130, 184, 323, 459
MspA1I	CMGCKG	1 cut(s)	236
MspR9I	CCNGG	1 cut(s)	142
MunI	CAATTG	1 cut(s)	219
MvaI	CCWGG	1 cut(s)	142
MvnI	CGCG	2 cut(s)	12, 75
MwoI	GCNNNNNNNGC	1 cut(s)	455
NdeI	CATATG	1 cut(s)	403
NdeII	GATC	2 cut(s)	242, 379
NheI	GCTAGC	1 cut(s)	64
NlaIII	CATG	6 cut(s)	201, 276, 416, 449, 484, 562
NlaIV	GGNNCC	2 cut(s)	49, 381
NmuCI	GTSAC	1 cut(s)	475
NruI	TCGCGA	1 cut(s)	12
NspI	RCATGY	2 cut(s)	276, 562
PaeI	GCATGC	1 cut(s)	276
PfoI	TCCNGGA	1 cut(s)	140
PkrI	GCNGC	1 cut(s)	457
PleI	GAGTC	1 cut(s)	291
PpsI	GAGTC	1 cut(s)	291
Psp124BI	GAGCTC	1 cut(s)	18
Psp6I	CCWGG	1 cut(s)	140
PspGI	CCWGG	1 cut(s)	140
PspN4I	GGNNCC	2 cut(s)	49, 381
PsuI	RGATCY	2 cut(s)	242, 379
PvuII	CAGCTG	1 cut(s)	236
RruI	TCGCGA	1 cut(s)	12
RsaI	GTAC	1 cut(s)	557
RsaNI	GTAC	1 cut(s)	556
SacI	GAGCTC	1 cut(s)	18
SatI	GCNGC	1 cut(s)	456
Sau3AI	GATC	2 cut(s)	242, 379
SchI	GAGTC	1 cut(s)	292
ScrFI	CCNGG	1 cut(s)	142
SduI	GDGCHC	3 cut(s)	18, 52, 164
SetI	ASST	7 cut(s)	18, 94, 238, 267, 334, 351, 522
SfaNI	GCATC	1 cut(s)	560
SphI	GCATGC	1 cut(s)	276
Sse9I	AATT	5 cut(s)	115, 219, 297, 306, 513
SsiI	CCGC	2 cut(s)	33, 73
SspMI	CTAG	3 cut(s)	53, 65, 302
SstI	GAGCTC	1 cut(s)	18
StyD4I	CCNGG	1 cut(s)	140
StyI	CCWWGG	2 cut(s)	353, 575
TaaI	ACNGT	1 cut(s)	40
TaqI	TCGA	1 cut(s)	609
TasI	AATT	5 cut(s)	115, 219, 297, 306, 513
TseFI	GTSAC	1 cut(s)	475
TseI	GCWGC	1 cut(s)	455
Tsp45I	GTSAC	1 cut(s)	475
TspDTI	ATGAA	2 cut(s)	17, 512
XceI	RCATGY	2 cut(s)	276, 562
XspI	CTAG	3 cut(s)	53, 65, 302

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.