Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004886.1

Orthogroup ID

OG0009957

Physical Location & Seq

Genomic Coordinates Forward (+)

56048 .. 59735

Gene Structure 3688 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004886.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1116 bp

atggtatggggaccaaaccttgtttatgaagttatggtatgggcgtaccgaatgggccaaagcaccattggacctacaaagtccgaacgaacagcaaactcccacgtggcctattttgcccgcgcctcgagaactggaaattttcgcgggaaaaattgttctccttctggagctaaaatgaactctcgcgagctcactctggtctccaccgccaccgtcatcggtgccctagcctctgcgctagccatccgcgtcttcttcacaaaacctaagaagcagtccccaaaactcaattcctcgcaaaacggcgtcgtttccaggaagtgctgttctcagagcccttttgacccctcaaaacgcaaagggtatttgacatgggatgattactttatggcaattgcgtttttatcagctgaaagatccaaagaccctaacaggcaggttggagcatgcttggtgagtcaaagtggtataattctaggaattgggtataatggtttcccaagaggttgttcggacgacaagctcccttgggcaaagatatccaaaactggggatcctttggagacaaaatatccttatgtttgtcatgctgaagtcaatgcaatcctaaacaccaatcatgcttctgctgctggacagaggctttatgtgaccatgttcccctgcaatgagtgtgccaagataatcattcagtcaggagttgctgaagttgtatattttgtggaaaagaggttaaacaatccagatatcacgtacattgcttctcacaaactactctcaatggctggtgttaaacagactccctcattcttcaaagatgaagaaaaagaaaaggagttctctggtgaaggggaaattgaatatccttcttttgatgggacaaatgaacatcctaacaaaagacctggcttagaggttcttcattttgcgaattgtgggtgcaatggttttaccatgtatgaccgcaatggtgatgatgagactaaatctattcaaacagatgagagctatcaagactttctaagtcttcttgagataaatgatgaaaacatgacatatgcaccccaaaatggtagaccagagacaaatgatgtggatcagattctgatttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00240 ko01100 map00240 map01100

Pfam Domains

Protein Families

dCMP_cyt_deam_1

Protein Analysis

371

Amino Acids

41.17

Weight (kDa)

6.99

Isoelectric Point (pI)

36.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009957)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48540
fragaria_vesca	FvH4_5g08340 FvH4_5g08340 FvH4_5g08340 FvH4_5g08340 FvH4_5g08340
malus_domestica	MD14G1156900.v1.1
prunus_persica	Prupe.5G150900_v2.0.a1 Prupe.5G150900_v2.0.a1
pyrus_communis	pycom14g13040
rosa_chinensis	RchiOBHm_Chr7g0190121
rosa_laevigata	RLG00000004564
rosa_multiflora	Rmu_sc0000690.1_g000051 Rmu_sc0004886.1_g000013
rosa_roxburghii	Rroxscaffold_3G00264860
rosa_rugosa	Rorug06G0502400 Rorug06G0502500
rosa_samantha	Rh7AG108000 Rh7BG110300 Rh7DG111100
rosa_wichuraiana	Rw7G009330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	430
AccB1I	GGYRCC	1 cut(s)	224
AccI	GTMKAC	1 cut(s)	1078
AccII	CGCG	4 cut(s)	123, 147, 189, 252
AciI	CCGC	5 cut(s)	121, 147, 210, 250, 967
AclWI	GGATC	4 cut(s)	414, 551, 564, 1107
AcsI	RAATTY	1 cut(s)	139
AcuI	CTGAAG	2 cut(s)	615, 729
AcvI	CACGTG	1 cut(s)	106
AcyI	GRCGYC	1 cut(s)	309
AfaI	GTAC	2 cut(s)	47, 758
AfiI	CCNNNNNNNGG	2 cut(s)	552, 1073
AgsI	TTSAA	3 cut(s)	817, 863, 998
AjnI	CCWGG	2 cut(s)	317, 907
AjuI	GAANNNNNNNTTGG	4 cut(s)	277, 309, 496, 528
AloI	GAACNNNNNNTCC	4 cut(s)	142, 174, 313, 345
AluBI	AGCT	5 cut(s)	173, 193, 413, 526, 1011
AluI	AGCT	5 cut(s)	173, 193, 413, 526, 1011
Alw21I	GWGCWC	1 cut(s)	195
Alw26I	GTCTC	4 cut(s)	208, 560, 977, 1079
AlwI	GGATC	4 cut(s)	414, 551, 564, 1107
AlwNI	CAGNNNCTG	1 cut(s)	1108
Ama87I	CYCGRG	1 cut(s)	127
AoxI	GGCC	2 cut(s)	55, 108
ApeKI	GCWGC	1 cut(s)	632
ApoI	RAATTY	1 cut(s)	139
AspLEI	GCGC	2 cut(s)	125, 241
AspS9I	GGNCC	3 cut(s)	11, 55, 71
AsuHPI	GGTGA	3 cut(s)	469, 860, 986
AsuNHI	GCTAGC	1 cut(s)	241
AvaI	CYCGRG	1 cut(s)	127
AvaII	GGWCC	2 cut(s)	11, 71
BaeGI	GKGCMC	1 cut(s)	229
BamHI	GGATCC	1 cut(s)	556
BanI	GGYRCC	1 cut(s)	224
BanII	GRGCYC	2 cut(s)	195, 341
BbrPI	CACGTG	1 cut(s)	106
BbsI	GAAGAC	2 cut(s)	247, 1022
Bbv12I	GWGCWC	1 cut(s)	195
BbvI	GCAGC	1 cut(s)	619
BccI	CCATC	2 cut(s)	254, 872
BceAI	ACGGC	1 cut(s)	322
BciT130I	CCWGG	2 cut(s)	319, 909
BcoDI	GTCTC	4 cut(s)	208, 560, 977, 1079
BfaI	CTAG	3 cut(s)	230, 242, 479
BfuAI	ACCTGC	1 cut(s)	430
BisI	GCNGC	1 cut(s)	633
BlsI	GCNGC	1 cut(s)	634
Bme1390I	CCNGG	2 cut(s)	319, 909
Bme18I	GGWCC	2 cut(s)	11, 71
BmeT110I	CYCGRG	1 cut(s)	127
BmgT120I	GGNCC	3 cut(s)	11, 55, 71
BmiI	GGNNCC	3 cut(s)	12, 226, 558
BmrFI	CCNGG	2 cut(s)	319, 909
BmrI	ACTGGG	1 cut(s)	561
BmtI	GCTAGC	1 cut(s)	245
BmuI	ACTGGG	1 cut(s)	561
BpiI	GAAGAC	2 cut(s)	247, 1022
BpmI	CTGGAG	1 cut(s)	189
BpuEI	CTTGAG	1 cut(s)	1055
BsaAI	YACGTR	2 cut(s)	106, 756
BsaBI	GATNNNNATC	1 cut(s)	1098
BsaHI	GRCGYC	1 cut(s)	309
BsaI	GGTCTC	1 cut(s)	208
BsaJI	CCNNGG	1 cut(s)	530
Bsc4I	CCNNNNNNNGG	2 cut(s)	552, 1073
Bse1I	ACTGG	2 cut(s)	139, 556
Bse3DI	GCAATG	4 cut(s)	676, 759, 952, 976
Bse8I	GATNNNNATC	1 cut(s)	1098
BseBI	CCWGG	2 cut(s)	319, 909
BseDI	CCNNGG	1 cut(s)	530
BseGI	GGATG	3 cut(s)	246, 385, 892
BseJI	GATNNNNATC	1 cut(s)	1098
BseLI	CCNNNNNNNGG	2 cut(s)	552, 1073
BseMI	GCAATG	4 cut(s)	676, 759, 952, 976
BseMII	CTCAG	1 cut(s)	347
BseNI	ACTGG	2 cut(s)	139, 556
BseSI	GKGCMC	1 cut(s)	229
BseXI	GCAGC	1 cut(s)	619
Bsh1236I	CGCG	4 cut(s)	123, 147, 189, 252
BshFI	GGCC	2 cut(s)	57, 110
BshNI	GGYRCC	1 cut(s)	224
BsiHKAI	GWGCWC	1 cut(s)	195
BsiHKCI	CYCGRG	1 cut(s)	127
BslFI	GGGAC	3 cut(s)	24, 265, 895
BslI	CCNNNNNNNGG	2 cut(s)	552, 1073
BsmAI	GTCTC	4 cut(s)	208, 560, 977, 1079
BsmFI	GGGAC	3 cut(s)	24, 265, 895
BsnI	GGCC	2 cut(s)	57, 110
Bso31I	GGTCTC	1 cut(s)	208
BsoBI	CYCGRG	1 cut(s)	127
Bsp1286I	GDGCHC	3 cut(s)	195, 229, 341
Bsp143I	GATC	3 cut(s)	419, 556, 1099
Bsp68I	TCGCGA	1 cut(s)	189
BspACI	CCGC	5 cut(s)	121, 147, 210, 250, 967
BspANI	GGCC	2 cut(s)	57, 110
BspCNI	CTCAG	1 cut(s)	346
BspFNI	CGCG	4 cut(s)	123, 147, 189, 252
BspLI	GGNNCC	3 cut(s)	12, 226, 558
BspMI	ACCTGC	1 cut(s)	430
BspOI	GCTAGC	1 cut(s)	245
BspPI	GGATC	4 cut(s)	414, 551, 564, 1107
BspT107I	GGYRCC	1 cut(s)	224
BspTNI	GGTCTC	1 cut(s)	208
BsrDI	GCAATG	4 cut(s)	676, 759, 952, 976
BsrI	ACTGG	2 cut(s)	139, 556
BssECI	CCNNGG	1 cut(s)	530
BssMI	GATC	3 cut(s)	419, 556, 1099
BssNI	GRCGYC	1 cut(s)	309
BssT1I	CCWWGG	1 cut(s)	530
Bst2UI	CCWGG	2 cut(s)	319, 909
Bst4CI	ACNGT	1 cut(s)	217
BstACI	GRCGYC	1 cut(s)	309
BstBAI	YACGTR	2 cut(s)	106, 756
BstC8I	GCNNGC	4 cut(s)	121, 191, 243, 451
BstDEI	CTNAG	4 cut(s)	270, 333, 913, 1025
BstF5I	GGATG	3 cut(s)	246, 385, 892
BstFNI	CGCG	4 cut(s)	123, 147, 189, 252
BstHHI	GCGC	2 cut(s)	125, 241
BstKTI	GATC	3 cut(s)	422, 559, 1102
BstMAI	GTCTC	4 cut(s)	208, 560, 977, 1079
BstMBI	GATC	3 cut(s)	419, 556, 1099
BstMWI	GCNNNNNNNGC	2 cut(s)	116, 632
BstNI	CCWGG	2 cut(s)	319, 909
BstNSI	RCATGY	1 cut(s)	453
BstSCI	CCNGG	2 cut(s)	317, 907
BstSLI	GKGCMC	1 cut(s)	229
BstUI	CGCG	4 cut(s)	123, 147, 189, 252
BstV1I	GCAGC	1 cut(s)	619
BstV2I	GAAGAC	2 cut(s)	247, 1022
BstX2I	RGATCY	2 cut(s)	419, 556
BstYI	RGATCY	2 cut(s)	419, 556
BsuRI	GGCC	2 cut(s)	57, 110
BtsCI	GGATG	3 cut(s)	246, 385, 892
BtuMI	TCGCGA	1 cut(s)	189
BveI	ACCTGC	1 cut(s)	430
Cac8I	GCNNGC	4 cut(s)	121, 191, 243, 451
CaiI	CAGNNNCTG	1 cut(s)	1108
CfoI	GCGC	2 cut(s)	125, 241
Cfr13I	GGNCC	3 cut(s)	11, 55, 71
CseI	GACGC	2 cut(s)	241, 298
Csp6I	GTAC	2 cut(s)	46, 757
CspCI	CAANNNNNGTGG	2 cut(s)	1077, 1112
CviAII	CATG	7 cut(s)	375, 450, 590, 623, 658, 958, 1054
CviQI	GTAC	2 cut(s)	46, 757
DdeI	CTNAG	4 cut(s)	270, 333, 913, 1025
DpnI	GATC	3 cut(s)	421, 558, 1101
DpnII	GATC	3 cut(s)	419, 556, 1099
Ecl136II	GAGCTC	1 cut(s)	193
Eco130I	CCWWGG	1 cut(s)	530
Eco24I	GRGCYC	2 cut(s)	195, 341
Eco31I	GGTCTC	1 cut(s)	208
Eco32I	GATATC	2 cut(s)	543, 751
Eco47I	GGWCC	2 cut(s)	11, 71
Eco53kI	GAGCTC	1 cut(s)	193
Eco57I	CTGAAG	2 cut(s)	615, 729
Eco72I	CACGTG	1 cut(s)	106
Eco88I	CYCGRG	1 cut(s)	127
EcoICRI	GAGCTC	1 cut(s)	193
EcoRII	CCWGG	2 cut(s)	317, 907
EcoRV	GATATC	2 cut(s)	543, 751
EcoT14I	CCWWGG	1 cut(s)	530
EcoT38I	GRGCYC	2 cut(s)	195, 341
ErhI	CCWWGG	1 cut(s)	530
FaeI	CATG	7 cut(s)	378, 453, 593, 626, 661, 961, 1057
FaqI	GGGAC	3 cut(s)	24, 265, 895
FatI	CATG	7 cut(s)	374, 449, 589, 622, 657, 957, 1053
FauI	CCCGC	2 cut(s)	128, 140
FauNDI	CATATG	1 cut(s)	1060
FblI	GTMKAC	1 cut(s)	1078
Fnu4HI	GCNGC	1 cut(s)	633
FokI	GGATG	3 cut(s)	233, 392, 879
FriOI	GRGCYC	2 cut(s)	195, 341
Fsp4HI	GCNGC	1 cut(s)	633
FspBI	CTAG	3 cut(s)	230, 242, 479
GlaI	GCGC	2 cut(s)	124, 240
GluI	GCNGC	1 cut(s)	633
GsuI	CTGGAG	1 cut(s)	189
HaeIII	GGCC	2 cut(s)	57, 110
HgaI	GACGC	2 cut(s)	241, 298
HhaI	GCGC	2 cut(s)	125, 241
Hin1I	GRCGYC	1 cut(s)	309
Hin1II	CATG	7 cut(s)	378, 453, 593, 626, 661, 961, 1057
Hin6I	GCGC	2 cut(s)	123, 239
HinP1I	GCGC	2 cut(s)	123, 239
HinfI	GANTC	3 cut(s)	460, 802, 1105
HphI	GGTGA	3 cut(s)	469, 860, 986
Hpy166II	GTNNAC	1 cut(s)	1079
Hpy188I	TCNGA	5 cut(s)	85, 336, 517, 1104, 1110
Hpy188III	TCNNGA	7 cut(s)	129, 168, 188, 699, 746, 1016, 1034
Hpy8I	GTNNAC	1 cut(s)	1079
Hpy99I	CGWCG	1 cut(s)	314
HpyAV	CCTTC	3 cut(s)	174, 845, 879
HpyCH4III	ACNGT	1 cut(s)	217
HpyCH4IV	ACGT	2 cut(s)	105, 755
HpyCH4V	TGCA	4 cut(s)	605, 669, 945, 1064
HpyF10VI	GCNNNNNNNGC	2 cut(s)	116, 632
HpyF3I	CTNAG	4 cut(s)	270, 333, 913, 1025
HpySE526I	ACGT	2 cut(s)	105, 755
Hsp92I	GRCGYC	1 cut(s)	309
Hsp92II	CATG	7 cut(s)	378, 453, 593, 626, 661, 961, 1057
HspAI	GCGC	2 cut(s)	123, 239
Kzo9I	GATC	3 cut(s)	419, 556, 1099
LmnI	GCTCC	3 cut(s)	170, 446, 531
Lsp1109I	GCAGC	1 cut(s)	619
MaeI	CTAG	3 cut(s)	230, 242, 479
MaeII	ACGT	2 cut(s)	105, 755
MaeIII	GTNAC	1 cut(s)	652
MalI	GATC	3 cut(s)	421, 558, 1101
MboI	GATC	3 cut(s)	419, 556, 1099
MboII	GAAGA	6 cut(s)	247, 250, 805, 836, 914, 1022
MfeI	CAATTG	1 cut(s)	396
MflI	RGATCY	2 cut(s)	419, 556
MhlI	GDGCHC	3 cut(s)	195, 229, 341
MluCI	AATT	8 cut(s)	139, 154, 292, 396, 474, 483, 858, 934
MlyI	GAGTC	2 cut(s)	469, 796
MmeI	TCCRAC	1 cut(s)	424
MnlI	CCTC	9 cut(s)	136, 244, 307, 361, 500, 636, 726, 817, 910
MseI	TTAA	3 cut(s)	737, 795, 1114
MspA1I	CMGCKG	1 cut(s)	413
MspR9I	CCNGG	2 cut(s)	319, 909
MunI	CAATTG	1 cut(s)	396
MvaI	CCWGG	2 cut(s)	319, 909
MvnI	CGCG	4 cut(s)	123, 147, 189, 252
MwoI	GCNNNNNNNGC	2 cut(s)	116, 632
NdeI	CATATG	1 cut(s)	1060
NdeII	GATC	3 cut(s)	419, 556, 1099
NheI	GCTAGC	1 cut(s)	241
NlaIII	CATG	7 cut(s)	378, 453, 593, 626, 661, 961, 1057
NlaIV	GGNNCC	3 cut(s)	12, 226, 558
NmuCI	GTSAC	1 cut(s)	652
NruI	TCGCGA	1 cut(s)	189
NspI	RCATGY	1 cut(s)	453
PaeI	GCATGC	1 cut(s)	453
PaeR7I	CTCGAG	1 cut(s)	127
PfeI	GAWTC	1 cut(s)	1105
PfoI	TCCNGGA	1 cut(s)	317
PkrI	GCNGC	1 cut(s)	634
PleI	GAGTC	2 cut(s)	468, 796
PmaCI	CACGTG	1 cut(s)	106
PmlI	CACGTG	1 cut(s)	106
PpsI	GAGTC	2 cut(s)	468, 796
Ppu21I	YACGTR	2 cut(s)	106, 756
Psp124BI	GAGCTC	1 cut(s)	195
Psp6I	CCWGG	2 cut(s)	317, 907
PspCI	CACGTG	1 cut(s)	106
PspGI	CCWGG	2 cut(s)	317, 907
PspN4I	GGNNCC	3 cut(s)	12, 226, 558
PspPI	GGNCC	3 cut(s)	11, 55, 71
PstNI	CAGNNNCTG	1 cut(s)	1108
PsuI	RGATCY	2 cut(s)	419, 556
PvuII	CAGCTG	1 cut(s)	413
RruI	TCGCGA	1 cut(s)	189
RsaI	GTAC	2 cut(s)	47, 758
RsaNI	GTAC	2 cut(s)	46, 757
SacI	GAGCTC	1 cut(s)	195
SaqAI	TTAA	3 cut(s)	737, 795, 1114
SatI	GCNGC	1 cut(s)	633
Sau3AI	GATC	3 cut(s)	419, 556, 1099
Sau96I	GGNCC	3 cut(s)	11, 55, 71
SchI	GAGTC	2 cut(s)	469, 796
ScrFI	CCNGG	2 cut(s)	319, 909
SduI	GDGCHC	3 cut(s)	195, 229, 341
Sfr274I	CTCGAG	1 cut(s)	127
SinI	GGWCC	2 cut(s)	11, 71
SlaI	CTCGAG	1 cut(s)	127
SmlI	CTYRAG	2 cut(s)	127, 1034
SmoI	CTYRAG	2 cut(s)	127, 1034
SphI	GCATGC	1 cut(s)	453
Sse9I	AATT	8 cut(s)	139, 154, 292, 396, 474, 483, 858, 934
SsiI	CCGC	5 cut(s)	121, 147, 210, 250, 967
SspMI	CTAG	3 cut(s)	230, 242, 479
SstI	GAGCTC	1 cut(s)	195
StyD4I	CCNGG	2 cut(s)	317, 907
StyI	CCWWGG	1 cut(s)	530
TaaI	ACNGT	1 cut(s)	217
TaiI	ACGT	2 cut(s)	108, 758
TaqI	TCGA	1 cut(s)	128
TasI	AATT	8 cut(s)	139, 154, 292, 396, 474, 483, 858, 934
TfiI	GAWTC	1 cut(s)	1105
Tru1I	TTAA	3 cut(s)	737, 795, 1114
Tru9I	TTAA	3 cut(s)	737, 795, 1114
TseFI	GTSAC	1 cut(s)	652
TseI	GCWGC	1 cut(s)	632
Tsp45I	GTSAC	1 cut(s)	652
TspDTI	ATGAA	6 cut(s)	42, 194, 837, 903, 914, 1062
VpaK11BI	GGWCC	2 cut(s)	11, 71
XapI	RAATTY	1 cut(s)	139
XceI	RCATGY	1 cut(s)	453
XcmI	CCANNNNNNNNNTGG	1 cut(s)	65
XhoI	CTCGAG	1 cut(s)	127
XmiI	GTMKAC	1 cut(s)	1078
XspI	CTAG	3 cut(s)	230, 242, 479

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.