AT3G49760
BZIP Family

basic region leucin zipper

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0015240
Physical Location & Seq
Reverse (-)
18455231 .. 18456125
895 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G49760.1

Sequence Viewer

Length: 471 bp
ATGATGTCTACTATTTCCCCGGTTTTCTCAACCGAACCGGGTCTATTAACCTCTGTCCTCCCAGCTTTTGAAACCAGTTTCACTCCATGGGACATTTCACACCTCTTCTCGGTCTTCGATTCATTAATCGATCCAAAACCGGTTTCGACCCATGACTATGGTTCAGTAAACCAGATCGGTTCAGACATGTCTCCGACCGACAATACCGACGAGCGGAAAAAGAAACGGAAATTATCGAACCGGGAATCGGCTAAGCGGTCAAGAGAGAAGAAACAAAAGCACTTGGAGGAGATGAGTATCCAGCTAAACCAACTCAAAATTCAGAACCAAGAATTGAAGAACCAGCTTCGGTACGTTTTATACCATTGTCAACGAACGAAGATGGAAAATGATCGTCTACTTATGGAGCACCGTATACTGCATGATAAGTTGTTGAACATCAGACAAGTTTTGATGTTTCGTCAAACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
bZIP_1 bZIP_2

Protein Analysis

156

Amino Acids

18.36

Weight (kDa)

9.41

Isoelectric Point (pI)

48.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bZIP_2 PF07716 69 - 116 2.4e-08 Basic region leucine zipper
bZIP_1 PF00170 72 - 130 3.5e-08 bZIP transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015240)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G49760
malus_domestica MD02G1189300.v1.1 MD15G1300200.v1.1
prunus_persica Prupe.6G217300_v2.0.a1
pyrus_communis pycom02g15350 pycom15g26280
rosa_chinensis RchiOBHm_Chr2g0108691
rosa_laevigata RLG00000017685
rosa_multiflora Rmu_co8051662.1_g000001
rosa_roxburghii Rroxscaffold_2G00134910
rosa_rugosa Rorug02G0155200
rosa_samantha Rh2AG204900 Rh2BG216800 Rh2CG208000 Rh2DG211200
rosa_wichuraiana Rw2G016320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 214
AccI GTMKAC 3 cut(s) 8, 397, 415
AciI CCGC 2 cut(s) 214, 256
AclWI GGATC 1 cut(s) 125
AcsI RAATTY 1 cut(s) 318
AfaI GTAC 1 cut(s) 353
AfiI CCNNNNNNNGG 3 cut(s) 109, 213, 247
AflIII ACRYGT 1 cut(s) 186
AgeI ACCGGT 1 cut(s) 139
AgsI TTSAA 3 cut(s) 71, 337, 436
AjuI GAANNNNNNNTTGG 4 cut(s) 127, 159, 303, 335
AluBI AGCT 3 cut(s) 65, 304, 346
AluI AGCT 3 cut(s) 65, 304, 346
Alw21I GWGCWC 1 cut(s) 411
Alw26I GTCTC 1 cut(s) 195
AlwI GGATC 1 cut(s) 125
ApoI RAATTY 1 cut(s) 318
AseI ATTAAT 1 cut(s) 125
AsiGI ACCGGT 1 cut(s) 139
AsuC2I CCSGG 3 cut(s) 20, 39, 242
BbsI GAAGAC 1 cut(s) 106
Bbv12I GWGCWC 1 cut(s) 411
BccI CCATC 1 cut(s) 376
BciVI GTATCC 1 cut(s) 308
BcnI CCSGG 3 cut(s) 20, 39, 242
BcoDI GTCTC 1 cut(s) 195
BfuI GTATCC 1 cut(s) 308
BlpI GCTNAGC 1 cut(s) 252
Bme1390I CCNGG 3 cut(s) 20, 39, 242
BmrFI CCNGG 3 cut(s) 20, 39, 242
BpiI GAAGAC 1 cut(s) 106
Bpu1102I GCTNAGC 1 cut(s) 252
BpuMI CCSGG 3 cut(s) 20, 39, 242
Bsa29I ATCGAT 1 cut(s) 129
BsaBI GATNNNNATC 1 cut(s) 296
BsaJI CCNNGG 2 cut(s) 18, 86
BsaWI WCCGGW 1 cut(s) 139
Bsc4I CCNNNNNNNGG 3 cut(s) 109, 213, 247
Bse118I RCCGGY 1 cut(s) 139
Bse1I ACTGG 1 cut(s) 75
Bse8I GATNNNNATC 1 cut(s) 296
BseCI ATCGAT 1 cut(s) 129
BseDI CCNNGG 2 cut(s) 18, 86
BseJI GATNNNNATC 1 cut(s) 296
BseLI CCNNNNNNNGG 3 cut(s) 109, 213, 247
BseNI ACTGG 1 cut(s) 75
BseRI GAGGAG 1 cut(s) 302
BseYI CCCAGC 1 cut(s) 61
Bsh1285I CGRYCG 1 cut(s) 198
BshTI ACCGGT 1 cut(s) 139
BshVI ATCGAT 1 cut(s) 129
BsiEI CGRYCG 1 cut(s) 198
BsiHKAI GWGCWC 1 cut(s) 411
BsiSI CCGG 4 cut(s) 20, 38, 140, 241
BslFI GGGAC 1 cut(s) 104
BslI CCNNNNNNNGG 3 cut(s) 109, 213, 247
BsmAI GTCTC 1 cut(s) 195
BsmFI GGGAC 1 cut(s) 104
Bsp1286I GDGCHC 1 cut(s) 411
Bsp143I GATC 3 cut(s) 130, 174, 391
Bsp1720I GCTNAGC 1 cut(s) 252
Bsp19I CCATGG 1 cut(s) 86
BspACI CCGC 2 cut(s) 214, 256
BspDI ATCGAT 1 cut(s) 129
BspPI GGATC 1 cut(s) 125
BsrBI CCGCTC 1 cut(s) 214
BsrFI RCCGGY 1 cut(s) 139
BsrI ACTGG 1 cut(s) 75
BssAI RCCGGY 1 cut(s) 139
BssECI CCNNGG 2 cut(s) 18, 86
BssMI GATC 3 cut(s) 130, 174, 391
BssNAI GTATAC 1 cut(s) 416
BssT1I CCWWGG 1 cut(s) 86
Bst1107I GTATAC 1 cut(s) 416
Bst4CI ACNGT 1 cut(s) 413
Bst6I CTCTTC 1 cut(s) 110
BstDEI CTNAG 1 cut(s) 252
BstDSI CCRYGG 1 cut(s) 86
BstKTI GATC 3 cut(s) 133, 177, 394
BstMAI GTCTC 1 cut(s) 195
BstMBI GATC 3 cut(s) 130, 174, 391
BstMCI CGRYCG 1 cut(s) 198
BstNSI RCATGY 1 cut(s) 190
BstSCI CCNGG 3 cut(s) 18, 37, 240
BstV2I GAAGAC 1 cut(s) 106
BstXI CCANNNNNNTGG 1 cut(s) 158
BstZ17I GTATAC 1 cut(s) 416
Bsu15I ATCGAT 1 cut(s) 129
BsuI GTATCC 1 cut(s) 308
BsuTUI ATCGAT 1 cut(s) 129
BtgI CCRYGG 1 cut(s) 86
Cfr10I RCCGGY 1 cut(s) 139
ClaI ATCGAT 1 cut(s) 129
Csp6I GTAC 1 cut(s) 352
CspAI ACCGGT 1 cut(s) 139
CviAII CATG 4 cut(s) 87, 152, 187, 422
CviJI RGCY 4 cut(s) 65, 251, 304, 346
CviKI_1 RGCY 4 cut(s) 65, 251, 304, 346
CviQI GTAC 1 cut(s) 352
DdeI CTNAG 1 cut(s) 252
DpnI GATC 3 cut(s) 132, 176, 393
DpnII GATC 3 cut(s) 130, 174, 391
Eam1104I CTCTTC 1 cut(s) 110
EarI CTCTTC 1 cut(s) 110
Eco130I CCWWGG 1 cut(s) 86
EcoT14I CCWWGG 1 cut(s) 86
ErhI CCWWGG 1 cut(s) 86
FaeI CATG 4 cut(s) 90, 155, 190, 425
FaiI YATR 8 cut(s) 88, 153, 159, 188, 361, 404, 416, 423
FaqI GGGAC 1 cut(s) 104
FatI CATG 4 cut(s) 86, 151, 186, 421
FblI GTMKAC 3 cut(s) 8, 397, 415
GsaI CCCAGC 1 cut(s) 65
HapII CCGG 4 cut(s) 20, 38, 140, 241
Hin1II CATG 4 cut(s) 90, 155, 190, 425
HincII GTYRAC 1 cut(s) 371
HindII GTYRAC 1 cut(s) 371
HinfI GANTC 2 cut(s) 119, 245
HpaII CCGG 4 cut(s) 20, 38, 140, 241
Hpy166II GTNNAC 5 cut(s) 9, 169, 371, 398, 416
Hpy188I TCNGA 4 cut(s) 184, 195, 324, 443
Hpy188III TCNNGA 1 cut(s) 261
Hpy8I GTNNAC 5 cut(s) 9, 169, 371, 398, 416
Hpy99I CGWCG 1 cut(s) 212
HpyCH4III ACNGT 1 cut(s) 413
HpyCH4IV ACGT 1 cut(s) 354
HpyCH4V TGCA 1 cut(s) 421
HpyF3I CTNAG 1 cut(s) 252
HpySE526I ACGT 1 cut(s) 354
Hsp92II CATG 4 cut(s) 90, 155, 190, 425
Kzo9I GATC 3 cut(s) 130, 174, 391
LmnI GCTCC 1 cut(s) 406
LpnPI CCDG 9 cut(s) 33, 51, 75, 88, 153, 185, 254, 314, 356
MaeII ACGT 1 cut(s) 354
MalI GATC 3 cut(s) 132, 176, 393
MbiI CCGCTC 1 cut(s) 214
MboI GATC 3 cut(s) 130, 174, 391
MboII GAAGA 5 cut(s) 97, 106, 280, 349, 391
MhlI GDGCHC 1 cut(s) 411
MluCI AATT 3 cut(s) 230, 318, 332
MmeI TCCRAC 1 cut(s) 218
MnlI CCTC 4 cut(s) 61, 68, 113, 280
MseI TTAA 2 cut(s) 47, 125
MslI CAYNNNNRTG 1 cut(s) 156
MspI CCGG 4 cut(s) 20, 38, 140, 241
MspR9I CCNGG 3 cut(s) 20, 39, 242
NciI CCSGG 3 cut(s) 20, 39, 242
NcoI CCATGG 1 cut(s) 86
NdeII GATC 3 cut(s) 130, 174, 391
NlaIII CATG 4 cut(s) 90, 155, 190, 425
NspI RCATGY 1 cut(s) 190
PciI ACATGT 1 cut(s) 186
PfeI GAWTC 2 cut(s) 119, 245
PinAI ACCGGT 1 cut(s) 139
PscI ACATGT 1 cut(s) 186
PshBI ATTAAT 1 cut(s) 125
PspFI CCCAGC 1 cut(s) 61
RsaI GTAC 1 cut(s) 353
RsaNI GTAC 1 cut(s) 352
RseI CAYNNNNRTG 1 cut(s) 156
SaqAI TTAA 2 cut(s) 47, 125
Sau3AI GATC 3 cut(s) 130, 174, 391
ScrFI CCNGG 3 cut(s) 20, 39, 242
SduI GDGCHC 1 cut(s) 411
SetI ASST 7 cut(s) 53, 67, 105, 306, 348, 357, 470
SmiMI CAYNNNNRTG 1 cut(s) 156
Sse9I AATT 3 cut(s) 230, 318, 332
SsiI CCGC 2 cut(s) 214, 256
StyD4I CCNGG 3 cut(s) 18, 37, 240
StyI CCWWGG 1 cut(s) 86
TaaI ACNGT 1 cut(s) 413
TaiI ACGT 1 cut(s) 357
TaqI TCGA 4 cut(s) 117, 129, 146, 236
TaqII GACCGA 2 cut(s) 100, 212
TasI AATT 3 cut(s) 230, 318, 332
TfiI GAWTC 2 cut(s) 119, 245
Tru1I TTAA 2 cut(s) 47, 125
Tru9I TTAA 2 cut(s) 47, 125
TspDTI ATGAA 1 cut(s) 111
TspGWI ACGGA 1 cut(s) 241
VspI ATTAAT 1 cut(s) 125
XapI RAATTY 1 cut(s) 318
XceI RCATGY 1 cut(s) 190
XmiI GTMKAC 3 cut(s) 8, 397, 415
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.