Rorug02G0155200
BZIP Family

basic region leucin zipper

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000268
Physical Location & Seq
Forward (+)
13834141 .. 13836978
2838 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0155200.1

Sequence Viewer

Length: 642 bp
ATGGCAAGTGGTTTTGGGGAATCAACAAGCGTGCCGCCCCAAAGCCAGTCTTGCTCGGGGAATAATGCCAATGATGCAGGGGATTTCGAGTGCAACATCTGCTTCGAATTGGCGCAAGATCCAATCATAACTCTTTGCGGTCATCTCTTCTGCTGGCCTTGTCTCTACAGATGGCTCCACCATCACTCACATTGCCAAGAATGCCCGGTGTGCAAGGCCCTCGTACAGGAAGACAAGTTGGTTCCTCTTTATGGCAGGGGCAAGACACAGACTGATCCAAGATCAAAATCGTATCCGGGTATCAATATTCCTAATCGCCCTGCTGGGCAGAGGCCTGAGACTGCTCCTCCCCAGGAGAACAATCAGTTTCCCAATTACAGCTTTGGGTTTATGGGAGGATTTATGCCAACGGCAACTGCCAGGATTGGTAACTTCACTTTGGCCACTGCATTTGGTGGTCTGATACCCTCATTGCTTAATATTCATTATCATGGGTTTCCAGATGCTACTGTATATGGAACAACTTCTGGTTTTCCTTACGGGTTCAGCAGTTCATTTCATGGGGGCCATGCCCATGGGTTCCCTCAGCCAGCAACTCAAAGGCAGCAGCTGCTGTTTGTATTGGCATTGATGACGGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
bZIP_1 bZIP_2

Protein Analysis

213

Amino Acids

23.23

Weight (kDa)

6.53

Isoelectric Point (pI)

58.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C3HC4_3 PF13920 29 - 76 1.4e-06 Zinc finger, C3HC4 type (RING finger)
zf-C3HC4_2 PF13923 30 - 71 2.7e-07 Zinc finger, C3HC4 type (RING finger)
zf-RING_2 PF13639 30 - 72 2.3e-07 Ring finger domain
zf-RING_5 PF14634 30 - 72 3.5e-06 zinc-RING finger domain
zf-RING_UBOX PF13445 31 - 69 2.3e-07 RING-type zinc-finger
zf-C3HC4 PF00097 31 - 71 4.4e-07 Zinc finger, C3HC4 type (RING finger)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000268)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g23642 FvH4_2g09911 FvH4_2g09911 FvH4_2g09911 FvH4_3g18421 FvH4_4g05321 FvH4_6g28332 FvH4_7g31231
prunus_persica Prupe.2G063700_v2.0.a1 Prupe.5G238300_v2.0.a1 Prupe.6G153700_v2.0.a1 Prupe.7G017400_v2.0.a1 Prupe.7G070100_v2.0.a1 Prupe.7G070100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0345471 RchiOBHm_Chr1g0366901 RchiOBHm_Chr2g0162601 RchiOBHm_Chr6g0266661 RchiOBHm_Chr6g0266671
rosa_laevigata RLG00000005047 RLG00000007971 RLG00000008530 RLG00000009009 RLG00000009046 RLG00000014086 RLG00000017162 RLG00000017163 RLG00000017440 RLG00000019098 RLG00000022623 RLG00000024566 RLG00000027733 RLG00000029878 RLG00000029945 RLG00000030127 RLG00000030157 RLG00000031078 RLG00000031080 RLG00000034338 RLG00000034670
rosa_multiflora Rmu_sc0002106.1_g000007 Rmu_sc0002531.1_g000064 Rmu_sc0003433.1_g000005 Rmu_sc0004704.1_g000001 Rmu_sc0004704.1_g000002 Rmu_sc0004888.1_g000042 Rmu_sc0005599.1_g000031 Rmu_sc0006413.1_g000014 Rmu_sc0006413.1_g000018
rosa_roxburghii Rroxscaffold_1G00031940 Rroxscaffold_1G00032500 Rroxscaffold_1G00074770 Rroxscaffold_1G00074780 Rroxscaffold_1G00075150 Rroxscaffold_2G00125060 Rroxscaffold_2G00125070 Rroxscaffold_2G00125800 Rroxscaffold_2G00125820 Rroxscaffold_2G00139560 Rroxscaffold_2G00140550 Rroxscaffold_4G00314090 Rroxscaffold_6G00390050 Rroxscaffold_6G00390520 Rroxscaffold_6G00390530 Rroxscaffold_6G00428030 Rroxscaffold_7G00201570 Rroxscaffold_7G00201580 Rroxscaffold_7G00207070 Rroxscaffold_7G00207080 Rroxscaffold_7G00207240
rosa_rugosa Rorug01G0408000 Rorug01G0408100 Rorug01G0408100 Rorug01G0408200 Rorug02G0155200 Rorug02G0181500 Rorug02G0288400 Rorug03G0208600 Rorug03G0272300 Rorug06G0005500 Rorug06G0005600 Rorug06G0026300.1 Rorug06G0026400 Rorug06G0026500 Rorug06G0026600 Rorug06G0026600 Rorug06G0026600 Rorug06G0145800 Rorug07G0305200
rosa_samantha Rh1AG062100 Rh1BG131900 Rh1BG157000 Rh1CG021100 Rh1CG321600 Rh1DG188200 Rh2DG388300 Rh3AG320500 Rh3BG355400 Rh3CG352400 Rh3CG353200 Rh4AG045800 Rh4DG171700 Rh5AG196000 Rh5AG196100 Rh5CG346800 Rh6BG147600 Rh6BG147700 Rh6CG143200 Rh6CG143500 Rh6CG174600 Rh6CG391800 Rh6DG132100 Rh6DG132300 Rh6DG167100 Rh6DG167200 Rh7AG211600 Rh7BG307000 Rh7BG307300 Rh7BG398300
rosa_wichuraiana Rw0G001830 Rw0G001840 Rw0G018160 Rw0G018170 Rw3G028040 Rw5G017860 Rw5G026710 Rw6G012630 Rw6G012650 Rw6G012780 Rw6G012800 Rw7G019130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 35, 138
AclWI GGATC 2 cut(s) 113, 269
AcoI YGGCCR 1 cut(s) 441
AfaI GTAC 1 cut(s) 225
AfiI CCNNNNNNNGG 2 cut(s) 226, 251
AjnI CCWGG 2 cut(s) 351, 419
AluBI AGCT 2 cut(s) 381, 610
AluI AGCT 2 cut(s) 381, 610
Alw26I GTCTC 2 cut(s) 167, 332
AlwI GGATC 2 cut(s) 113, 269
AlwNI CAGNNNCTG 2 cut(s) 610, 613
Ama87I CYCGRG 1 cut(s) 55
AoxI GGCC 5 cut(s) 155, 216, 332, 441, 565
ApeKI GCWGC 3 cut(s) 604, 607, 610
Asp700I GAANNNNTTC 1 cut(s) 523
AspLEI GCGC 1 cut(s) 115
AspS9I GGNCC 2 cut(s) 217, 565
AsuC2I CCSGG 2 cut(s) 206, 297
AsuII TTCGAA 1 cut(s) 105
AvaI CYCGRG 1 cut(s) 55
BalI TGGCCA 1 cut(s) 443
BbsI GAAGAC 1 cut(s) 237
BbvCI CCTCAGC 1 cut(s) 585
BbvI GCAGC 3 cut(s) 597, 616, 619
BccI CCATC 2 cut(s) 165, 189
BceAI ACGGC 1 cut(s) 426
BcgI CGANNNNNNTGC 2 cut(s) 202, 236
BciT130I CCWGG 2 cut(s) 353, 421
BciVI GTATCC 1 cut(s) 303
BcnI CCSGG 2 cut(s) 206, 297
BcoDI GTCTC 2 cut(s) 167, 332
BfmI CTRYAG 1 cut(s) 166
BfuI GTATCC 1 cut(s) 303
BisI GCNGC 4 cut(s) 35, 605, 608, 611
BlsI GCNGC 4 cut(s) 36, 606, 609, 612
Bme1390I CCNGG 4 cut(s) 206, 297, 353, 421
BmeT110I CYCGRG 1 cut(s) 55
BmgT120I GGNCC 2 cut(s) 217, 565
BmiI GGNNCC 4 cut(s) 176, 243, 566, 581
BmrFI CCNGG 4 cut(s) 206, 297, 353, 421
BmsI GCATC 2 cut(s) 64, 493
BpiI GAAGAC 1 cut(s) 237
Bpu10I CCTNAGC 1 cut(s) 585
Bpu14I TTCGAA 1 cut(s) 105
BpuMI CCSGG 2 cut(s) 206, 297
BsaBI GATNNNNATC 1 cut(s) 286
BsaJI CCNNGG 2 cut(s) 351, 574
BsaXI ACNNNNNCTCC 2 cut(s) 331, 361
Bsc4I CCNNNNNNNGG 2 cut(s) 226, 251
Bse1I ACTGG 1 cut(s) 46
Bse3DI GCAATG 2 cut(s) 190, 470
Bse8I GATNNNNATC 1 cut(s) 286
BseBI CCWGG 2 cut(s) 353, 421
BseDI CCNNGG 2 cut(s) 351, 574
BseJI GATNNNNATC 1 cut(s) 286
BseLI CCNNNNNNNGG 2 cut(s) 226, 251
BseMI GCAATG 2 cut(s) 190, 470
BseMII CTCAG 2 cut(s) 327, 599
BseNI ACTGG 1 cut(s) 46
BseRI GAGGAG 1 cut(s) 336
BseXI GCAGC 3 cut(s) 597, 616, 619
BseYI CCCAGC 1 cut(s) 323
BshFI GGCC 5 cut(s) 157, 218, 334, 443, 567
BsiHKCI CYCGRG 1 cut(s) 55
BsiSI CCGG 2 cut(s) 206, 296
BslI CCNNNNNNNGG 2 cut(s) 226, 251
BsmAI GTCTC 2 cut(s) 167, 332
BsmI GAATGC 1 cut(s) 206
BsnI GGCC 5 cut(s) 157, 218, 334, 443, 567
BsoBI CYCGRG 1 cut(s) 55
Bsp119I TTCGAA 1 cut(s) 105
Bsp143I GATC 3 cut(s) 118, 274, 281
Bsp19I CCATGG 1 cut(s) 574
BspACI CCGC 2 cut(s) 35, 138
BspANI GGCC 5 cut(s) 157, 218, 334, 443, 567
BspCNI CTCAG 2 cut(s) 328, 598
BspLI GGNNCC 4 cut(s) 176, 243, 566, 581
BspPI GGATC 2 cut(s) 113, 269
BspT104I TTCGAA 1 cut(s) 105
BsrDI GCAATG 2 cut(s) 190, 470
BsrI ACTGG 1 cut(s) 46
BssECI CCNNGG 2 cut(s) 351, 574
BssMI GATC 3 cut(s) 118, 274, 281
BssT1I CCWWGG 1 cut(s) 574
Bst2UI CCWGG 2 cut(s) 353, 421
Bst4CI ACNGT 2 cut(s) 511, 637
Bst6I CTCTTC 1 cut(s) 152
BstAPI GCANNNNNTGC 2 cut(s) 99, 610
BstBI TTCGAA 1 cut(s) 105
BstC8I GCNNGC 3 cut(s) 32, 155, 591
BstDEI CTNAG 2 cut(s) 336, 585
BstDSI CCRYGG 1 cut(s) 574
BstENI CCTNNNNNAGG 1 cut(s) 224
BstHHI GCGC 1 cut(s) 115
BstKTI GATC 3 cut(s) 121, 277, 284
BstMAI GTCTC 2 cut(s) 167, 332
BstMBI GATC 3 cut(s) 118, 274, 281
BstMWI GCNNNNNNNGC 6 cut(s) 51, 74, 99, 201, 210, 610
BstNI CCWGG 2 cut(s) 353, 421
BstSCI CCNGG 4 cut(s) 204, 295, 351, 419
BstSFI CTRYAG 1 cut(s) 166
BstV1I GCAGC 3 cut(s) 597, 616, 619
BstV2I GAAGAC 1 cut(s) 237
BstX2I RGATCY 1 cut(s) 118
BstXI CCANNNNNNTGG 1 cut(s) 575
BstYI RGATCY 1 cut(s) 118
BsuI GTATCC 1 cut(s) 303
BsuRI GGCC 5 cut(s) 157, 218, 334, 443, 567
BtgI CCRYGG 1 cut(s) 574
BtsI GCAGTG 1 cut(s) 444
BtsIMutI CAGTG 1 cut(s) 444
Cac8I GCNNGC 3 cut(s) 32, 155, 591
CaiI CAGNNNCTG 2 cut(s) 610, 613
CfoI GCGC 1 cut(s) 115
Cfr13I GGNCC 2 cut(s) 217, 565
Csp6I GTAC 1 cut(s) 224
CspCI CAANNNNNGTGG 2 cut(s) 433, 468
CviAII CATG 4 cut(s) 491, 560, 569, 575
CviQI GTAC 1 cut(s) 224
DdeI CTNAG 2 cut(s) 336, 585
DpnI GATC 3 cut(s) 120, 276, 283
DpnII GATC 3 cut(s) 118, 274, 281
EaeI YGGCCR 1 cut(s) 441
Eam1104I CTCTTC 1 cut(s) 152
EarI CTCTTC 1 cut(s) 152
Eco130I CCWWGG 1 cut(s) 574
Eco147I AGGCCT 1 cut(s) 334
Eco88I CYCGRG 1 cut(s) 55
EcoNI CCTNNNNNAGG 1 cut(s) 224
EcoO109I RGGNCCY 1 cut(s) 217
EcoRII CCWGG 2 cut(s) 351, 419
EcoT14I CCWWGG 1 cut(s) 574
ErhI CCWWGG 1 cut(s) 574
FaeI CATG 4 cut(s) 494, 563, 572, 578
FalI AAGNNNNNCTT 2 cut(s) 34, 66
FatI CATG 4 cut(s) 490, 559, 568, 574
Fnu4HI GCNGC 4 cut(s) 35, 605, 608, 611
Fsp4HI GCNGC 4 cut(s) 35, 605, 608, 611
GlaI GCGC 1 cut(s) 114
GluI GCNGC 4 cut(s) 35, 605, 608, 611
GsaI CCCAGC 1 cut(s) 327
HaeIII GGCC 5 cut(s) 157, 218, 334, 443, 567
HapII CCGG 2 cut(s) 206, 296
HhaI GCGC 1 cut(s) 115
Hin1II CATG 4 cut(s) 494, 563, 572, 578
Hin6I GCGC 1 cut(s) 113
HinP1I GCGC 1 cut(s) 113
HinfI GANTC 1 cut(s) 20
HpaII CCGG 2 cut(s) 206, 296
Hpy188I TCNGA 1 cut(s) 462
Hpy188III TCNNGA 1 cut(s) 500
HpyCH4III ACNGT 2 cut(s) 511, 637
HpyCH4V TGCA 4 cut(s) 77, 93, 213, 449
HpyF10VI GCNNNNNNNGC 6 cut(s) 51, 74, 99, 201, 210, 610
HpyF3I CTNAG 2 cut(s) 336, 585
Hsp92II CATG 4 cut(s) 494, 563, 572, 578
HspAI GCGC 1 cut(s) 113
Kzo9I GATC 3 cut(s) 118, 274, 281
LmnI GCTCC 2 cut(s) 180, 349
Lsp1109I GCAGC 3 cut(s) 597, 616, 619
LweI GCATC 2 cut(s) 64, 493
MaeIII GTNAC 1 cut(s) 428
MalI GATC 3 cut(s) 120, 276, 283
MboI GATC 3 cut(s) 118, 274, 281
MboII GAAGA 2 cut(s) 139, 242
MflI RGATCY 1 cut(s) 118
MlsI TGGCCA 1 cut(s) 443
MluCI AATT 2 cut(s) 107, 373
MluNI TGGCCA 1 cut(s) 443
MnlI CCTC 7 cut(s) 230, 255, 324, 357, 389, 478, 594
Mox20I TGGCCA 1 cut(s) 443
MroXI GAANNNNTTC 1 cut(s) 523
MscI TGGCCA 1 cut(s) 443
MseI TTAA 1 cut(s) 477
MslI CAYNNNNRTG 2 cut(s) 489, 573
Msp20I TGGCCA 1 cut(s) 443
MspA1I CMGCKG 1 cut(s) 610
MspI CCGG 2 cut(s) 206, 296
MspR9I CCNGG 4 cut(s) 206, 297, 353, 421
Mva1269I GAATGC 1 cut(s) 206
MvaI CCWGG 2 cut(s) 353, 421
MwoI GCNNNNNNNGC 6 cut(s) 51, 74, 99, 201, 210, 610
NciI CCSGG 2 cut(s) 206, 297
NcoI CCATGG 1 cut(s) 574
NdeII GATC 3 cut(s) 118, 274, 281
NlaIII CATG 4 cut(s) 494, 563, 572, 578
NlaIV GGNNCC 4 cut(s) 176, 243, 566, 581
NspV TTCGAA 1 cut(s) 105
PceI AGGCCT 1 cut(s) 334
PctI GAATGC 1 cut(s) 206
PdmI GAANNNNTTC 1 cut(s) 523
PfeI GAWTC 1 cut(s) 20
PkrI GCNGC 4 cut(s) 36, 606, 609, 612
Psp6I CCWGG 2 cut(s) 351, 419
PspFI CCCAGC 1 cut(s) 323
PspGI CCWGG 2 cut(s) 351, 419
PspN4I GGNNCC 4 cut(s) 176, 243, 566, 581
PspPI GGNCC 2 cut(s) 217, 565
PstNI CAGNNNCTG 2 cut(s) 610, 613
PsuI RGATCY 1 cut(s) 118
PvuII CAGCTG 1 cut(s) 610
RsaI GTAC 1 cut(s) 225
RsaNI GTAC 1 cut(s) 224
RseI CAYNNNNRTG 2 cut(s) 489, 573
SaqAI TTAA 1 cut(s) 477
SatI GCNGC 4 cut(s) 35, 605, 608, 611
Sau3AI GATC 3 cut(s) 118, 274, 281
Sau96I GGNCC 2 cut(s) 217, 565
ScrFI CCNGG 4 cut(s) 206, 297, 353, 421
SetI ASST 2 cut(s) 383, 612
SfaNI GCATC 2 cut(s) 64, 493
SfcI CTRYAG 1 cut(s) 166
SfuI TTCGAA 1 cut(s) 105
SmiMI CAYNNNNRTG 2 cut(s) 489, 573
Sse9I AATT 2 cut(s) 107, 373
SseBI AGGCCT 1 cut(s) 334
SsiI CCGC 2 cut(s) 35, 138
SspI AATATT 2 cut(s) 307, 481
StuI AGGCCT 1 cut(s) 334
StyD4I CCNGG 4 cut(s) 204, 295, 351, 419
StyI CCWWGG 1 cut(s) 574
TaaI ACNGT 2 cut(s) 511, 637
TaqI TCGA 2 cut(s) 87, 105
TasI AATT 2 cut(s) 107, 373
TauI GCSGC 1 cut(s) 37
TfiI GAWTC 1 cut(s) 20
Tru1I TTAA 1 cut(s) 477
Tru9I TTAA 1 cut(s) 477
TscAI CASTG 1 cut(s) 451
TseI GCWGC 3 cut(s) 604, 607, 610
TspDTI ATGAA 3 cut(s) 473, 543, 548
TspRI CASTG 1 cut(s) 451
XagI CCTNNNNNAGG 1 cut(s) 224
XmnI GAANNNNTTC 1 cut(s) 523
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.