Rh3BG355400

PCI domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0000268
Physical Location & Seq
Reverse (-)
42196931 .. 42204578
7648 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG355400.1

Sequence Viewer

Length: 240 bp
ATGGAGGATAAGCCAAGAAAGCTGCAAGATATTGGTCCTTTCGCAGGGTGTTATGATCTTTATGATGACGACCTTCGTATAGTTCACTTTTGTCGTAGTGTGATACGGAGTATTGAAACTGCACAGATATTTGATTTTGAGGAATTCCCTAAGAGAGATAAGTTCCGGTTTTGGTTTGGGGGTCAGTGGGTCACCCACTGGAGTGTTGTATGCTTGAATTTAAGGACAATGGATGGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000160 GO:0000956 GO:0000972 GO:0000973 GO:0002376 GO:0002520 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006354 GO:0006355 GO:0006366 GO:0006368 GO:0006401 GO:0006402 GO:0006403 GO:0006405 GO:0006406 GO:0006611 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0006996 GO:0007088 GO:0007154 GO:0007165 GO:0007275 GO:0007346 GO:0008104 GO:0008150 GO:0008152 GO:0008298 GO:0009056 GO:0009057 GO:0009058 GO:0009059 GO:0009719 GO:0009723 GO:0009725 GO:0009755 GO:0009873 GO:0009889 GO:0009891 GO:0009892 GO:0009893 GO:0009894 GO:0009987 GO:0010033 GO:0010466 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010564 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0010941 GO:0010951 GO:0010965 GO:0015031 GO:0015833 GO:0015931 GO:0016043 GO:0016070 GO:0016071 GO:0016973 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019439 GO:0022622 GO:0023052 GO:0030071 GO:0030162 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031328 GO:0031329 GO:0031503 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0032774 GO:0032870 GO:0032991 GO:0033036 GO:0033043 GO:0033044 GO:0033045 GO:0033047 GO:0034613 GO:0034641 GO:0034645 GO:0034654 GO:0034655 GO:0035556 GO:0042221 GO:0042886 GO:0042981 GO:0043066 GO:0043067 GO:0043069 GO:0043086 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043487 GO:0043488 GO:0044092 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044265 GO:0044270 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0045787 GO:0045861 GO:0045893 GO:0045931 GO:0045935 GO:0046483 GO:0046700 GO:0046907 GO:0048364 GO:0048513 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048534 GO:0048536 GO:0048731 GO:0048856 GO:0050657 GO:0050658 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051028 GO:0051128 GO:0051168 GO:0051169 GO:0051171 GO:0051172 GO:0051173 GO:0051179 GO:0051234 GO:0051236 GO:0051246 GO:0051248 GO:0051252 GO:0051254 GO:0051276 GO:0051336 GO:0051346 GO:0051641 GO:0051649 GO:0051716 GO:0051726 GO:0051783 GO:0051983 GO:0052547 GO:0052548 GO:0060255 GO:0060548 GO:0060968 GO:0061013 GO:0065007 GO:0065008 GO:0065009 GO:0070390 GO:0070727 GO:0070887 GO:0071025 GO:0071027 GO:0071028 GO:0071033 GO:0071166 GO:0071310 GO:0071369 GO:0071426 GO:0071427 GO:0071495 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0080090 GO:0090068 GO:0090231 GO:0090232 GO:0090266 GO:0090267 GO:0090304 GO:0097159 GO:0097659 GO:0099402 GO:1901360 GO:1901361 GO:1901362 GO:1901363 GO:1901575 GO:1901576 GO:1901976 GO:1901978 GO:1901987 GO:1901990 GO:1902099 GO:1902680 GO:1903311 GO:1903504 GO:1903506 GO:1903508 GO:1905818 GO:2000112 GO:2000116 GO:2000117 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PCI

Protein Analysis

79

Amino Acids

9.49

Weight (kDa)

5.55

Isoelectric Point (pI)

54.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000268)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g23642 FvH4_2g09911 FvH4_2g09911 FvH4_2g09911 FvH4_3g18421 FvH4_4g05321 FvH4_6g28332 FvH4_7g31231
prunus_persica Prupe.2G063700_v2.0.a1 Prupe.5G238300_v2.0.a1 Prupe.6G153700_v2.0.a1 Prupe.7G017400_v2.0.a1 Prupe.7G070100_v2.0.a1 Prupe.7G070100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0345471 RchiOBHm_Chr1g0366901 RchiOBHm_Chr2g0162601 RchiOBHm_Chr6g0266661 RchiOBHm_Chr6g0266671
rosa_laevigata RLG00000005047 RLG00000007971 RLG00000008530 RLG00000009009 RLG00000009046 RLG00000014086 RLG00000017162 RLG00000017163 RLG00000017440 RLG00000019098 RLG00000022623 RLG00000024566 RLG00000027733 RLG00000029878 RLG00000029945 RLG00000030127 RLG00000030157 RLG00000031078 RLG00000031080 RLG00000034338 RLG00000034670
rosa_multiflora Rmu_sc0002106.1_g000007 Rmu_sc0002531.1_g000064 Rmu_sc0003433.1_g000005 Rmu_sc0004704.1_g000001 Rmu_sc0004704.1_g000002 Rmu_sc0004888.1_g000042 Rmu_sc0005599.1_g000031 Rmu_sc0006413.1_g000014 Rmu_sc0006413.1_g000018
rosa_roxburghii Rroxscaffold_1G00031940 Rroxscaffold_1G00032500 Rroxscaffold_1G00074770 Rroxscaffold_1G00074780 Rroxscaffold_1G00075150 Rroxscaffold_2G00125060 Rroxscaffold_2G00125070 Rroxscaffold_2G00125800 Rroxscaffold_2G00125820 Rroxscaffold_2G00139560 Rroxscaffold_2G00140550 Rroxscaffold_4G00314090 Rroxscaffold_6G00390050 Rroxscaffold_6G00390520 Rroxscaffold_6G00390530 Rroxscaffold_6G00428030 Rroxscaffold_7G00201570 Rroxscaffold_7G00201580 Rroxscaffold_7G00207070 Rroxscaffold_7G00207080 Rroxscaffold_7G00207240
rosa_rugosa Rorug01G0408000 Rorug01G0408100 Rorug01G0408100 Rorug01G0408200 Rorug02G0155200 Rorug02G0181500 Rorug02G0288400 Rorug03G0208600 Rorug03G0272300 Rorug06G0005500 Rorug06G0005600 Rorug06G0026300.1 Rorug06G0026400 Rorug06G0026500 Rorug06G0026600 Rorug06G0026600 Rorug06G0026600 Rorug06G0145800 Rorug07G0305200
rosa_samantha Rh1AG062100 Rh1BG131900 Rh1BG157000 Rh1CG021100 Rh1CG321600 Rh1DG188200 Rh2DG388300 Rh3AG320500 Rh3BG355400 Rh3CG352400 Rh3CG353200 Rh4AG045800 Rh4DG171700 Rh5AG196000 Rh5AG196100 Rh5CG346800 Rh6BG147600 Rh6BG147700 Rh6CG143200 Rh6CG143500 Rh6CG174600 Rh6CG391800 Rh6DG132100 Rh6DG132300 Rh6DG167100 Rh6DG167200 Rh7AG211600 Rh7BG307000 Rh7BG307300 Rh7BG398300
rosa_wichuraiana Rw0G001830 Rw0G001840 Rw0G018160 Rw0G018170 Rw3G028040 Rw5G017860 Rw5G026710 Rw6G012630 Rw6G012650 Rw6G012780 Rw6G012800 Rw7G019130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 143, 217
AfiI CCNNNNNNNGG 1 cut(s) 44
AgsI TTSAA 2 cut(s) 116, 217
AleI CACNNNNGTG 1 cut(s) 201
AluBI AGCT 1 cut(s) 22
AluI AGCT 1 cut(s) 22
ApeKI GCWGC 1 cut(s) 22
ApoI RAATTY 2 cut(s) 143, 217
AspS9I GGNCC 1 cut(s) 35
AsuHPI GGTGA 1 cut(s) 184
AvaII GGWCC 1 cut(s) 35
BbvI GCAGC 1 cut(s) 9
BccI CCATC 1 cut(s) 227
BisI GCNGC 1 cut(s) 23
BlsI GCNGC 1 cut(s) 24
Bme18I GGWCC 1 cut(s) 35
BmgT120I GGNCC 1 cut(s) 35
BpmI CTGGAG 1 cut(s) 220
BsaWI WCCGGW 1 cut(s) 165
Bsc4I CCNNNNNNNGG 1 cut(s) 44
Bse1I ACTGG 1 cut(s) 203
BseGI GGATG 1 cut(s) 238
BseLI CCNNNNNNNGG 1 cut(s) 44
BseNI ACTGG 1 cut(s) 203
BseXI GCAGC 1 cut(s) 9
BsgI GTGCAG 1 cut(s) 105
BsiSI CCGG 1 cut(s) 166
BslI CCNNNNNNNGG 1 cut(s) 44
Bsp143I GATC 1 cut(s) 55
BsrI ACTGG 1 cut(s) 203
BssMI GATC 1 cut(s) 55
BstDEI CTNAG 1 cut(s) 150
BstEII GGTNACC 1 cut(s) 190
BstENI CCTNNNNNAGG 1 cut(s) 42
BstF5I GGATG 1 cut(s) 238
BstKTI GATC 1 cut(s) 58
BstMBI GATC 1 cut(s) 55
BstMWI GCNNNNNNNGC 1 cut(s) 19
BstPI GGTNACC 1 cut(s) 190
BstV1I GCAGC 1 cut(s) 9
BtsCI GGATG 1 cut(s) 238
BtsIMutI CAGTG 2 cut(s) 191, 196
Cfr13I GGNCC 1 cut(s) 35
CviJI RGCY 2 cut(s) 13, 22
CviKI_1 RGCY 2 cut(s) 13, 22
DdeI CTNAG 1 cut(s) 150
DpnI GATC 1 cut(s) 57
DpnII GATC 1 cut(s) 55
Eco47I GGWCC 1 cut(s) 35
Eco91I GGTNACC 1 cut(s) 190
EcoNI CCTNNNNNAGG 1 cut(s) 42
EcoO65I GGTNACC 1 cut(s) 190
EcoRI GAATTC 1 cut(s) 143
FaiI YATR 4 cut(s) 54, 63, 80, 211
Fnu4HI GCNGC 1 cut(s) 23
Fsp4HI GCNGC 1 cut(s) 23
GluI GCNGC 1 cut(s) 23
GsuI CTGGAG 1 cut(s) 220
HapII CCGG 1 cut(s) 166
HpaII CCGG 1 cut(s) 166
HphI GGTGA 1 cut(s) 184
Hpy166II GTNNAC 1 cut(s) 85
Hpy8I GTNNAC 1 cut(s) 85
HpyAV CCTTC 1 cut(s) 83
HpyCH4V TGCA 2 cut(s) 25, 122
HpyF10VI GCNNNNNNNGC 1 cut(s) 19
HpyF3I CTNAG 1 cut(s) 150
Kzo9I GATC 1 cut(s) 55
LpnPI CCDG 3 cut(s) 30, 179, 184
Lsp1109I GCAGC 1 cut(s) 9
MaeIII GTNAC 1 cut(s) 190
MalI GATC 1 cut(s) 57
MboI GATC 1 cut(s) 55
MluCI AATT 2 cut(s) 143, 217
MnlI CCTC 1 cut(s) 133
MseI TTAA 1 cut(s) 221
MslI CAYNNNNRTG 1 cut(s) 201
MspI CCGG 1 cut(s) 166
MwoI GCNNNNNNNGC 1 cut(s) 19
NdeII GATC 1 cut(s) 55
NmuCI GTSAC 1 cut(s) 190
OliI CACNNNNGTG 1 cut(s) 201
PkrI GCNGC 1 cut(s) 24
PspEI GGTNACC 1 cut(s) 190
PspPI GGNCC 1 cut(s) 35
RseI CAYNNNNRTG 1 cut(s) 201
SaqAI TTAA 1 cut(s) 221
SatI GCNGC 1 cut(s) 23
Sau3AI GATC 1 cut(s) 55
Sau96I GGNCC 1 cut(s) 35
SetI ASST 2 cut(s) 24, 75
SgeI CNNG 6 cut(s) 27, 38, 57, 178, 211, 226
SinI GGWCC 1 cut(s) 35
SmiMI CAYNNNNRTG 1 cut(s) 201
Sse9I AATT 2 cut(s) 143, 217
TasI AATT 2 cut(s) 143, 217
Tru1I TTAA 1 cut(s) 221
Tru9I TTAA 1 cut(s) 221
TscAI CASTG 2 cut(s) 191, 203
TseFI GTSAC 1 cut(s) 190
TseI GCWGC 1 cut(s) 22
Tsp45I GTSAC 1 cut(s) 190
TspGWI ACGGA 1 cut(s) 121
TspRI CASTG 2 cut(s) 191, 203
VpaK11BI GGWCC 1 cut(s) 35
XagI CCTNNNNNAGG 1 cut(s) 42
XapI RAATTY 2 cut(s) 143, 217
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.