Rroxscaffold_2G00125060

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000268
Physical Location & Seq
Reverse (-)
59641785 .. 59642494
710 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00125060.1

Sequence Viewer

Length: 576 bp
ATGGGAAACAAGCATGGTGTGGAAGATGCGTTTCCAGAGAGAGCAGATGTGGAGCTTTTGAAAAATGTTGTTAGTCGCATTGAGAAATTAGTTGAAGAACTCAAAAATATTGTTGTTGATACTGTCCCTACAAAAGTTGTGGAAGAGCTGAGGGGATTAAAAGAATTTTTGAAGTCATTAAAGGTGGGCGTCAATGATGGTGTGGAAAAGGAAGGAGAAGATATTGAACAGAAAAACGGAGACACGTTTGCAAATCAGAAACATTATCGACACATGCAGAGCCCAGATAGATCATCTTGCCAAATGCTCAGCCCTGACAATCAGCCACAATACACAGAGGCTAACGAACCCCAAGTCGGTATTAAAAACATTAAGAAAGAGATTTCATTGCCTGAACTCTGTCCGGATCCCCTTTTGAAGTACGGTGATAAAATAGAACGTCTAACAGCACAACTTTTACATGAAAAGCCGAGAAAGATACAAGATATTGGTCCTTTTAAAGGGTGTCGTGACCTTTCCAATGAAGAAGTAGATCTAATAGCTTTCATATATCTCAAAGTCTGGAATGAAGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

191

Amino Acids

21.84

Weight (kDa)

5.2

Isoelectric Point (pI)

42.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000268)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g23642 FvH4_2g09911 FvH4_2g09911 FvH4_2g09911 FvH4_3g18421 FvH4_4g05321 FvH4_6g28332 FvH4_7g31231
prunus_persica Prupe.2G063700_v2.0.a1 Prupe.5G238300_v2.0.a1 Prupe.6G153700_v2.0.a1 Prupe.7G017400_v2.0.a1 Prupe.7G070100_v2.0.a1 Prupe.7G070100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0345471 RchiOBHm_Chr1g0366901 RchiOBHm_Chr2g0162601 RchiOBHm_Chr6g0266661 RchiOBHm_Chr6g0266671
rosa_laevigata RLG00000005047 RLG00000007971 RLG00000008530 RLG00000009009 RLG00000009046 RLG00000014086 RLG00000017162 RLG00000017163 RLG00000017440 RLG00000019098 RLG00000022623 RLG00000024566 RLG00000027733 RLG00000029878 RLG00000029945 RLG00000030127 RLG00000030157 RLG00000031078 RLG00000031080 RLG00000034338 RLG00000034670
rosa_multiflora Rmu_sc0002106.1_g000007 Rmu_sc0002531.1_g000064 Rmu_sc0003433.1_g000005 Rmu_sc0004704.1_g000001 Rmu_sc0004704.1_g000002 Rmu_sc0004888.1_g000042 Rmu_sc0005599.1_g000031 Rmu_sc0006413.1_g000014 Rmu_sc0006413.1_g000018
rosa_roxburghii Rroxscaffold_1G00031940 Rroxscaffold_1G00032500 Rroxscaffold_1G00074770 Rroxscaffold_1G00074780 Rroxscaffold_1G00075150 Rroxscaffold_2G00125060 Rroxscaffold_2G00125070 Rroxscaffold_2G00125800 Rroxscaffold_2G00125820 Rroxscaffold_2G00139560 Rroxscaffold_2G00140550 Rroxscaffold_4G00314090 Rroxscaffold_6G00390050 Rroxscaffold_6G00390520 Rroxscaffold_6G00390530 Rroxscaffold_6G00428030 Rroxscaffold_7G00201570 Rroxscaffold_7G00201580 Rroxscaffold_7G00207070 Rroxscaffold_7G00207080 Rroxscaffold_7G00207240
rosa_rugosa Rorug01G0408000 Rorug01G0408100 Rorug01G0408100 Rorug01G0408200 Rorug02G0155200 Rorug02G0181500 Rorug02G0288400 Rorug03G0208600 Rorug03G0272300 Rorug06G0005500 Rorug06G0005600 Rorug06G0026300.1 Rorug06G0026400 Rorug06G0026500 Rorug06G0026600 Rorug06G0026600 Rorug06G0026600 Rorug06G0145800 Rorug07G0305200
rosa_samantha Rh1AG062100 Rh1BG131900 Rh1BG157000 Rh1CG021100 Rh1CG321600 Rh1DG188200 Rh2DG388300 Rh3AG320500 Rh3BG355400 Rh3CG352400 Rh3CG353200 Rh4AG045800 Rh4DG171700 Rh5AG196000 Rh5AG196100 Rh5CG346800 Rh6BG147600 Rh6BG147700 Rh6CG143200 Rh6CG143500 Rh6CG174600 Rh6CG391800 Rh6DG132100 Rh6DG132300 Rh6DG167100 Rh6DG167200 Rh7AG211600 Rh7BG307000 Rh7BG307300 Rh7BG398300
rosa_wichuraiana Rw0G001830 Rw0G001840 Rw0G018160 Rw0G018170 Rw3G028040 Rw5G017860 Rw5G026710 Rw6G012630 Rw6G012650 Rw6G012780 Rw6G012800 Rw7G019130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 403
AclWI GGATC 2 cut(s) 401, 414
AcsI RAATTY 1 cut(s) 164
AcyI GRCGYC 1 cut(s) 189
AfaI GTAC 1 cut(s) 422
AfiI CCNNNNNNNGG 2 cut(s) 356, 500
AflIII ACRYGT 1 cut(s) 243
AgsI TTSAA 5 cut(s) 61, 95, 172, 227, 418
AluBI AGCT 3 cut(s) 55, 148, 542
AluI AGCT 3 cut(s) 55, 148, 542
Alw26I GTCTC 1 cut(s) 234
AlwI GGATC 2 cut(s) 401, 414
Aor13HI TCCGGA 1 cut(s) 403
ApoI RAATTY 1 cut(s) 164
ArsI GACNNNNNNTTYG 2 cut(s) 339, 371
AspS9I GGNCC 1 cut(s) 491
AsuHPI GGTGA 1 cut(s) 437
AvaII GGWCC 1 cut(s) 491
BamHI GGATCC 1 cut(s) 406
BanII GRGCYC 1 cut(s) 284
BbvCI CCTCAGC 1 cut(s) 149
BccI CCATC 1 cut(s) 191
BcoDI GTCTC 1 cut(s) 234
BglII AGATCT 1 cut(s) 532
BlpI GCTNAGC 1 cut(s) 308
Bme18I GGWCC 1 cut(s) 491
BmgT120I GGNCC 1 cut(s) 491
BmiI GGNNCC 1 cut(s) 408
BmsI GCATC 1 cut(s) 16
Bpu10I CCTNAGC 1 cut(s) 149
Bpu1102I GCTNAGC 1 cut(s) 308
BsaHI GRCGYC 1 cut(s) 189
BsaWI WCCGGW 1 cut(s) 403
Bsc4I CCNNNNNNNGG 2 cut(s) 356, 500
Bse3DI GCAATG 1 cut(s) 386
BseAI TCCGGA 1 cut(s) 403
BseLI CCNNNNNNNGG 2 cut(s) 356, 500
BseMI GCAATG 1 cut(s) 386
BseMII CTCAG 2 cut(s) 140, 322
BsiSI CCGG 1 cut(s) 404
BslFI GGGAC 1 cut(s) 110
BslI CCNNNNNNNGG 2 cut(s) 356, 500
BsmAI GTCTC 1 cut(s) 234
BsmFI GGGAC 1 cut(s) 110
Bsp1286I GDGCHC 1 cut(s) 284
Bsp13I TCCGGA 1 cut(s) 403
Bsp143I GATC 3 cut(s) 290, 406, 532
Bsp1720I GCTNAGC 1 cut(s) 308
BspCNI CTCAG 2 cut(s) 141, 321
BspEI TCCGGA 1 cut(s) 403
BspLI GGNNCC 1 cut(s) 408
BspPI GGATC 2 cut(s) 401, 414
BspQI GCTCTTC 1 cut(s) 138
BsrDI GCAATG 1 cut(s) 386
BssMI GATC 3 cut(s) 290, 406, 532
BssNI GRCGYC 1 cut(s) 189
Bst4CI ACNGT 2 cut(s) 124, 425
Bst6I CTCTTC 2 cut(s) 138, 564
BstACI GRCGYC 1 cut(s) 189
BstDEI CTNAG 2 cut(s) 149, 308
BstENI CCTNNNNNAGG 1 cut(s) 498
BstKTI GATC 3 cut(s) 293, 409, 535
BstMAI GTCTC 1 cut(s) 234
BstMBI GATC 3 cut(s) 290, 406, 532
BstNSI RCATGY 1 cut(s) 277
BstX2I RGATCY 2 cut(s) 406, 532
BstYI RGATCY 2 cut(s) 406, 532
Cfr13I GGNCC 1 cut(s) 491
CseI GACGC 1 cut(s) 178
Csp6I GTAC 1 cut(s) 421
CspCI CAANNNNNGTGG 2 cut(s) 120, 155
CviAII CATG 3 cut(s) 14, 274, 461
CviJI RGCY 8 cut(s) 55, 148, 282, 312, 325, 341, 469, 542
CviKI_1 RGCY 8 cut(s) 55, 148, 282, 312, 325, 341, 469, 542
CviQI GTAC 1 cut(s) 421
DdeI CTNAG 2 cut(s) 149, 308
DpnI GATC 3 cut(s) 292, 408, 534
DpnII GATC 3 cut(s) 290, 406, 532
DraI TTTAAA 1 cut(s) 499
Eam1104I CTCTTC 2 cut(s) 138, 564
EarI CTCTTC 2 cut(s) 138, 564
Eco24I GRGCYC 1 cut(s) 284
Eco47I GGWCC 1 cut(s) 491
EcoNI CCTNNNNNAGG 1 cut(s) 498
EcoT38I GRGCYC 1 cut(s) 284
FaeI CATG 3 cut(s) 17, 277, 464
FaiI YATR 5 cut(s) 15, 275, 462, 548, 550
FaqI GGGAC 1 cut(s) 110
FatI CATG 3 cut(s) 13, 273, 460
FriOI GRGCYC 1 cut(s) 284
HapII CCGG 1 cut(s) 404
HgaI GACGC 1 cut(s) 178
Hin1I GRCGYC 1 cut(s) 189
Hin1II CATG 3 cut(s) 17, 277, 464
HpaII CCGG 1 cut(s) 404
HphI GGTGA 1 cut(s) 437
Hpy188I TCNGA 1 cut(s) 258
Hpy188III TCNNGA 4 cut(s) 35, 404, 509, 562
HpyAV CCTTC 1 cut(s) 206
HpyCH4III ACNGT 2 cut(s) 124, 425
HpyCH4IV ACGT 2 cut(s) 245, 439
HpyCH4V TGCA 2 cut(s) 251, 277
HpyF3I CTNAG 2 cut(s) 149, 308
HpySE526I ACGT 2 cut(s) 245, 439
Hsp92I GRCGYC 1 cut(s) 189
Hsp92II CATG 3 cut(s) 17, 277, 464
Kpn2I TCCGGA 1 cut(s) 403
Kzo9I GATC 3 cut(s) 290, 406, 532
LguI GCTCTTC 1 cut(s) 138
LmnI GCTCC 1 cut(s) 52
LpnPI CCDG 6 cut(s) 48, 297, 327, 405, 417, 547
LweI GCATC 1 cut(s) 16
MaeII ACGT 2 cut(s) 245, 439
MaeIII GTNAC 1 cut(s) 509
MalI GATC 3 cut(s) 292, 408, 534
MboI GATC 3 cut(s) 290, 406, 532
MboII GAAGA 5 cut(s) 35, 107, 155, 230, 536
MflI RGATCY 2 cut(s) 406, 532
MhlI GDGCHC 1 cut(s) 284
MluCI AATT 2 cut(s) 86, 164
MnlI CCTC 2 cut(s) 144, 331
MroI TCCGGA 1 cut(s) 403
MseI TTAA 5 cut(s) 158, 179, 363, 372, 498
MspI CCGG 1 cut(s) 404
NdeII GATC 3 cut(s) 290, 406, 532
NlaIII CATG 3 cut(s) 17, 277, 464
NlaIV GGNNCC 1 cut(s) 408
NmeAIII GCCGAG 1 cut(s) 495
NmuCI GTSAC 1 cut(s) 509
NspI RCATGY 1 cut(s) 277
PciSI GCTCTTC 1 cut(s) 138
PspN4I GGNNCC 1 cut(s) 408
PspPI GGNCC 1 cut(s) 491
PsuI RGATCY 2 cut(s) 406, 532
RsaI GTAC 1 cut(s) 422
RsaNI GTAC 1 cut(s) 421
SapI GCTCTTC 1 cut(s) 138
SaqAI TTAA 5 cut(s) 158, 179, 363, 372, 498
Sau3AI GATC 3 cut(s) 290, 406, 532
Sau96I GGNCC 1 cut(s) 491
SduI GDGCHC 1 cut(s) 284
SetI ASST 7 cut(s) 57, 150, 186, 248, 442, 516, 544
SfaNI GCATC 1 cut(s) 16
SinI GGWCC 1 cut(s) 491
Sse9I AATT 2 cut(s) 86, 164
SspI AATATT 1 cut(s) 109
TaaI ACNGT 2 cut(s) 124, 425
TaiI ACGT 2 cut(s) 248, 442
TaqI TCGA 1 cut(s) 268
TasI AATT 2 cut(s) 86, 164
Tru1I TTAA 5 cut(s) 158, 179, 363, 372, 498
Tru9I TTAA 5 cut(s) 158, 179, 363, 372, 498
TseFI GTSAC 1 cut(s) 509
Tsp45I GTSAC 1 cut(s) 509
TspDTI ATGAA 4 cut(s) 375, 477, 535, 537
TspGWI ACGGA 1 cut(s) 252
VpaK11BI GGWCC 1 cut(s) 491
XagI CCTNNNNNAGG 1 cut(s) 498
XapI RAATTY 1 cut(s) 164
XceI RCATGY 1 cut(s) 277
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.