Rh6CG174600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0000268
Physical Location & Seq
Forward (+)
24707492 .. 24709889
2398 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG174600.1

Sequence Viewer

Length: 1119 bp
ATGAAGGGTTATCTGAAAAACGGTGTGAAATTATTTGAACTTATTCCGACACTTGATAGGGCATTGTTACGGCTTAGGAACAAGGTTGTGGAAGAGGATTTTAAGTCCAATAATTCTAATCATGTCCTTACTTCTTCACTTCGAAAATTGGAAGATCATGCAGCTAACTTTGTTTACGTTCTCATTTTCGTTAGAAAAATCCAAGCGGATGAGTTGATTGCTTGCGGTAAGAATGTGAAGAAAGATAATGAGTTTAAGAAATTGGTGGCTTCTAAGTGGCATACACTCACGCCTACTGAAAAAGCCAAGTACAGTATTCCAGGCCCTGATGTTTCATCTAGAACTACGAAGAAAAGTAGGAATACATCCAAATCCTCAGCTACCATATCCACTCGATGCAGTCCACACCAGTTTCAACAAGTTGTTTCTAAATTTTCTGGGGAACAGATTGCAGCAATAACTGAATTGGGCTTTGGTACATTAGTGCAATTGTCATGCACACGAGTACGCCGAGATTTATGTCGATTTTTGATTGATAAGTTTGACACTGAGGAGTGTTTGATTGAGCTGCATGGTAAGAGTATGAAAATGAGTTCTTCAGATTTTAAACAGATTATGAGTGTACCTGAAGGAGGAACAGATGTAGACTTCAGTGGCTCAATTGAAGACCCTGACATGAAACCATTGGTTGATTATTATGTCGGAAATTCTGGGTATATAGAAATTTCAGACATAATTGCAAAGTTAGATGGAGTAAACGTAGTAGATGATCACTTTGGAGTCAGCTTCATTCTATTGGCATTGGGAACCTTGCTTTGCCCAAATACATCAACACATCTCAATCCAAAGTACCTTCTTGCATTGAAGAATATGAAGAATATAAGAAGTATGAACTGGGCAAGTTTTTCATTTGAATTTCTATTGGAAAGTGTGCGGTTGTTCAAGCAGAACAAAGCTAAGTACATATCTGGATGTGTGTTGTTCTTCCAACTATATTATTATAATGTCATCGGATATGGAAGGACACTTGTTGATTGTGAGAAGCCTTCAATTGTAGTTTGGGGAGAGGAGCAATCAGCAAAATTAATTAAATGGATATTGTGGAAAGGGGGGTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMG_box

Protein Analysis

372

Amino Acids

42.02

Weight (kDa)

9.05

Isoelectric Point (pI)

34.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000268)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g23642 FvH4_2g09911 FvH4_2g09911 FvH4_2g09911 FvH4_3g18421 FvH4_4g05321 FvH4_6g28332 FvH4_7g31231
prunus_persica Prupe.2G063700_v2.0.a1 Prupe.5G238300_v2.0.a1 Prupe.6G153700_v2.0.a1 Prupe.7G017400_v2.0.a1 Prupe.7G070100_v2.0.a1 Prupe.7G070100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0345471 RchiOBHm_Chr1g0366901 RchiOBHm_Chr2g0162601 RchiOBHm_Chr6g0266661 RchiOBHm_Chr6g0266671
rosa_laevigata RLG00000005047 RLG00000007971 RLG00000008530 RLG00000009009 RLG00000009046 RLG00000014086 RLG00000017162 RLG00000017163 RLG00000017440 RLG00000019098 RLG00000022623 RLG00000024566 RLG00000027733 RLG00000029878 RLG00000029945 RLG00000030127 RLG00000030157 RLG00000031078 RLG00000031080 RLG00000034338 RLG00000034670
rosa_multiflora Rmu_sc0002106.1_g000007 Rmu_sc0002531.1_g000064 Rmu_sc0003433.1_g000005 Rmu_sc0004704.1_g000001 Rmu_sc0004704.1_g000002 Rmu_sc0004888.1_g000042 Rmu_sc0005599.1_g000031 Rmu_sc0006413.1_g000014 Rmu_sc0006413.1_g000018
rosa_roxburghii Rroxscaffold_1G00031940 Rroxscaffold_1G00032500 Rroxscaffold_1G00074770 Rroxscaffold_1G00074780 Rroxscaffold_1G00075150 Rroxscaffold_2G00125060 Rroxscaffold_2G00125070 Rroxscaffold_2G00125800 Rroxscaffold_2G00125820 Rroxscaffold_2G00139560 Rroxscaffold_2G00140550 Rroxscaffold_4G00314090 Rroxscaffold_6G00390050 Rroxscaffold_6G00390520 Rroxscaffold_6G00390530 Rroxscaffold_6G00428030 Rroxscaffold_7G00201570 Rroxscaffold_7G00201580 Rroxscaffold_7G00207070 Rroxscaffold_7G00207080 Rroxscaffold_7G00207240
rosa_rugosa Rorug01G0408000 Rorug01G0408100 Rorug01G0408100 Rorug01G0408200 Rorug02G0155200 Rorug02G0181500 Rorug02G0288400 Rorug03G0208600 Rorug03G0272300 Rorug06G0005500 Rorug06G0005600 Rorug06G0026300.1 Rorug06G0026400 Rorug06G0026500 Rorug06G0026600 Rorug06G0026600 Rorug06G0026600 Rorug06G0145800 Rorug07G0305200
rosa_samantha Rh1AG062100 Rh1BG131900 Rh1BG157000 Rh1CG021100 Rh1CG321600 Rh1DG188200 Rh2DG388300 Rh3AG320500 Rh3BG355400 Rh3CG352400 Rh3CG353200 Rh4AG045800 Rh4DG171700 Rh5AG196000 Rh5AG196100 Rh5CG346800 Rh6BG147600 Rh6BG147700 Rh6CG143200 Rh6CG143500 Rh6CG174600 Rh6CG391800 Rh6DG132100 Rh6DG132300 Rh6DG167100 Rh6DG167200 Rh7AG211600 Rh7BG307000 Rh7BG307300 Rh7BG398300
rosa_wichuraiana Rw0G001830 Rw0G001840 Rw0G018160 Rw0G018170 Rw3G028040 Rw5G017860 Rw5G026710 Rw6G012630 Rw6G012650 Rw6G012780 Rw6G012800 Rw7G019130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1002
AccI GTMKAC 1 cut(s) 645
AciI CCGC 3 cut(s) 206, 225, 934
AcsI RAATTY 4 cut(s) 431, 706, 723, 914
AcuI CTGAAG 3 cut(s) 582, 634, 648
AfaI GTAC 6 cut(s) 311, 478, 507, 624, 851, 962
AfiI CCNNNNNNNGG 1 cut(s) 632
AgsI TTSAA 7 cut(s) 38, 416, 665, 865, 914, 943, 1050
AjnI CCWGG 1 cut(s) 319
AjuI GAANNNNNNNTTGG 2 cut(s) 456, 488
AluBI AGCT 5 cut(s) 164, 380, 568, 786, 956
AluI AGCT 5 cut(s) 164, 380, 568, 786, 956
AlwNI CAGNNNCTG 1 cut(s) 326
AoxI GGCC 1 cut(s) 322
ApeKI GCWGC 3 cut(s) 161, 452, 568
ApoI RAATTY 4 cut(s) 431, 706, 723, 914
AseI ATTAAT 1 cut(s) 1085
Asp700I GAANNNNTTC 1 cut(s) 42
AspS9I GGNCC 1 cut(s) 323
AsuII TTCGAA 1 cut(s) 142
BaeI ACNNNNGTAYC 2 cut(s) 468, 501
BauI CACGAG 1 cut(s) 501
BbsI GAAGAC 1 cut(s) 672
BbvCI CCTCAGC 1 cut(s) 376
BbvI GCAGC 3 cut(s) 173, 464, 555
BccI CCATC 1 cut(s) 743
BceAI ACGGC 1 cut(s) 86
BciT130I CCWGG 1 cut(s) 321
BclI TGATCA 1 cut(s) 769
BfaI CTAG 1 cut(s) 339
BisI GCNGC 3 cut(s) 162, 453, 569
BlsI GCNGC 3 cut(s) 163, 454, 570
Bme1390I CCNGG 1 cut(s) 321
BmgT120I GGNCC 1 cut(s) 323
BmiI GGNNCC 1 cut(s) 808
BmrFI CCNGG 1 cut(s) 321
BmrI ACTGGG 1 cut(s) 904
BmsI GCATC 1 cut(s) 386
BmuI ACTGGG 1 cut(s) 904
BpiI GAAGAC 1 cut(s) 672
Bpu10I CCTNAGC 2 cut(s) 74, 376
Bpu14I TTCGAA 1 cut(s) 142
BsaXI ACNNNNNCTCC 2 cut(s) 744, 774
Bsc4I CCNNNNNNNGG 1 cut(s) 632
Bse1I ACTGG 2 cut(s) 409, 899
BseBI CCWGG 1 cut(s) 321
BseGI GGATG 3 cut(s) 214, 365, 977
BseLI CCNNNNNNNGG 1 cut(s) 632
BseMII CTCAG 2 cut(s) 390, 540
BseNI ACTGG 2 cut(s) 409, 899
BseRI GAGGAG 2 cut(s) 566, 1082
BseXI GCAGC 3 cut(s) 173, 464, 555
BshFI GGCC 1 cut(s) 324
BslI CCNNNNNNNGG 1 cut(s) 632
BsnI GGCC 1 cut(s) 324
Bsp119I TTCGAA 1 cut(s) 142
Bsp143I GATC 2 cut(s) 154, 769
BspACI CCGC 3 cut(s) 206, 225, 934
BspANI GGCC 1 cut(s) 324
BspCNI CTCAG 2 cut(s) 389, 541
BspHI TCATGA 1 cut(s) 1115
BspLI GGNNCC 1 cut(s) 808
BspT104I TTCGAA 1 cut(s) 142
BsrI ACTGG 2 cut(s) 409, 899
BssMI GATC 2 cut(s) 154, 769
BssSI CACGAG 1 cut(s) 501
Bst2BI CACGAG 1 cut(s) 501
Bst2UI CCWGG 1 cut(s) 321
Bst4CI ACNGT 2 cut(s) 23, 314
Bst6I CTCTTC 1 cut(s) 87
BstBI TTCGAA 1 cut(s) 142
BstC8I GCNNGC 1 cut(s) 223
BstDEI CTNAG 5 cut(s) 74, 273, 376, 549, 957
BstENI CCTNNNNNAGG 1 cut(s) 630
BstF5I GGATG 3 cut(s) 214, 365, 977
BstKTI GATC 2 cut(s) 157, 772
BstMBI GATC 2 cut(s) 154, 769
BstNI CCWGG 1 cut(s) 321
BstSCI CCNGG 1 cut(s) 319
BstV1I GCAGC 3 cut(s) 173, 464, 555
BstV2I GAAGAC 1 cut(s) 672
BsuRI GGCC 1 cut(s) 324
BtsCI GGATG 3 cut(s) 214, 365, 977
BtsIMutI CAGTG 2 cut(s) 546, 658
Cac8I GCNNGC 1 cut(s) 223
CaiI CAGNNNCTG 1 cut(s) 326
CciI TCATGA 1 cut(s) 1115
Cfr13I GGNCC 1 cut(s) 323
Csp6I GTAC 6 cut(s) 310, 477, 506, 623, 850, 961
CviAII CATG 6 cut(s) 122, 158, 495, 572, 676, 1116
CviQI GTAC 6 cut(s) 310, 477, 506, 623, 850, 961
DdeI CTNAG 5 cut(s) 74, 273, 376, 549, 957
DpnI GATC 2 cut(s) 156, 771
DpnII GATC 2 cut(s) 154, 769
DraI TTTAAA 1 cut(s) 607
Eam1104I CTCTTC 1 cut(s) 87
EarI CTCTTC 1 cut(s) 87
Eco57I CTGAAG 3 cut(s) 582, 634, 648
EcoNI CCTNNNNNAGG 1 cut(s) 630
EcoO109I RGGNCCY 1 cut(s) 323
EcoRII CCWGG 1 cut(s) 319
FaeI CATG 6 cut(s) 125, 161, 498, 575, 679, 1119
FatI CATG 6 cut(s) 121, 157, 494, 571, 675, 1115
FbaI TGATCA 1 cut(s) 769
FblI GTMKAC 1 cut(s) 645
Fnu4HI GCNGC 3 cut(s) 162, 453, 569
FokI GGATG 3 cut(s) 221, 352, 984
Fsp4HI GCNGC 3 cut(s) 162, 453, 569
FspBI CTAG 1 cut(s) 339
GluI GCNGC 3 cut(s) 162, 453, 569
HaeIII GGCC 1 cut(s) 324
Hin1II CATG 6 cut(s) 125, 161, 498, 575, 679, 1119
HinfI GANTC 1 cut(s) 780
Hpy166II GTNNAC 5 cut(s) 175, 404, 623, 646, 757
Hpy188I TCNGA 6 cut(s) 15, 48, 601, 704, 730, 1013
Hpy188III TCNNGA 3 cut(s) 339, 969, 1116
Hpy8I GTNNAC 5 cut(s) 175, 404, 623, 646, 757
HpyAV CCTTC 4 cut(s) 623, 863, 1014, 1056
HpyCH4III ACNGT 2 cut(s) 23, 314
HpyCH4IV ACGT 2 cut(s) 177, 759
HpyCH4V TGCA 8 cut(s) 161, 399, 452, 487, 498, 571, 740, 860
HpyF3I CTNAG 5 cut(s) 74, 273, 376, 549, 957
HpySE526I ACGT 2 cut(s) 177, 759
Hsp92II CATG 6 cut(s) 125, 161, 498, 575, 679, 1119
Ksp22I TGATCA 1 cut(s) 769
Kzo9I GATC 2 cut(s) 154, 769
LmnI GCTCC 1 cut(s) 1069
Lsp1109I GCAGC 3 cut(s) 173, 464, 555
LweI GCATC 1 cut(s) 386
MaeI CTAG 1 cut(s) 339
MaeII ACGT 2 cut(s) 177, 759
MaeIII GTNAC 1 cut(s) 66
MalI GATC 2 cut(s) 156, 771
MboI GATC 2 cut(s) 154, 769
MfeI CAATTG 3 cut(s) 488, 660, 1050
MlyI GAGTC 1 cut(s) 789
MmeI TCCRAC 3 cut(s) 71, 682, 1012
MnlI CCTC 5 cut(s) 88, 385, 544, 626, 1060
MroXI GAANNNNTTC 1 cut(s) 42
MseI TTAA 5 cut(s) 102, 255, 606, 1085, 1089
MspR9I CCNGG 1 cut(s) 321
MunI CAATTG 3 cut(s) 488, 660, 1050
MvaI CCWGG 1 cut(s) 321
NdeII GATC 2 cut(s) 154, 769
NlaIII CATG 6 cut(s) 125, 161, 498, 575, 679, 1119
NlaIV GGNNCC 1 cut(s) 808
NmeAIII GCCGAG 1 cut(s) 536
NspV TTCGAA 1 cut(s) 142
PacI TTAATTAA 1 cut(s) 1089
PagI TCATGA 1 cut(s) 1115
PcsI WCGNNNNNNNCGW 1 cut(s) 508
PdmI GAANNNNTTC 1 cut(s) 42
PkrI GCNGC 3 cut(s) 163, 454, 570
PleI GAGTC 1 cut(s) 788
PpsI GAGTC 1 cut(s) 788
PshBI ATTAAT 1 cut(s) 1085
PsiI TTATAA 1 cut(s) 1002
Psp6I CCWGG 1 cut(s) 319
PspGI CCWGG 1 cut(s) 319
PspN4I GGNNCC 1 cut(s) 808
PspPI GGNCC 1 cut(s) 323
PstNI CAGNNNCTG 1 cut(s) 326
RsaI GTAC 6 cut(s) 311, 478, 507, 624, 851, 962
RsaNI GTAC 6 cut(s) 310, 477, 506, 623, 850, 961
SaqAI TTAA 5 cut(s) 102, 255, 606, 1085, 1089
SatI GCNGC 3 cut(s) 162, 453, 569
Sau3AI GATC 2 cut(s) 154, 769
Sau96I GGNCC 1 cut(s) 323
SchI GAGTC 1 cut(s) 789
ScrFI CCNGG 1 cut(s) 321
SfaNI GCATC 1 cut(s) 386
SfuI TTCGAA 1 cut(s) 142
SsiI CCGC 3 cut(s) 206, 225, 934
SspMI CTAG 1 cut(s) 339
StyD4I CCNGG 1 cut(s) 319
TaaI ACNGT 2 cut(s) 23, 314
TaiI ACGT 2 cut(s) 180, 762
TaqI TCGA 3 cut(s) 142, 394, 523
TatI WGTACW 2 cut(s) 309, 960
Tru1I TTAA 5 cut(s) 102, 255, 606, 1085, 1089
Tru9I TTAA 5 cut(s) 102, 255, 606, 1085, 1089
TscAI CASTG 2 cut(s) 553, 658
TseI GCWGC 3 cut(s) 161, 452, 568
TspDTI ATGAA 8 cut(s) 17, 324, 599, 692, 778, 887, 897, 905
TspRI CASTG 2 cut(s) 553, 658
VspI ATTAAT 1 cut(s) 1085
XagI CCTNNNNNAGG 1 cut(s) 630
XapI RAATTY 4 cut(s) 431, 706, 723, 914
XbaI TCTAGA 1 cut(s) 338
XmiI GTMKAC 1 cut(s) 645
XmnI GAANNNNTTC 1 cut(s) 42
XspI CTAG 1 cut(s) 339
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.