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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1820 |
| Acc65I | GGTACC | 2 cut(s) | 1364, 1586 |
| AccB1I | GGYRCC | 5 cut(s) | 563, 1364, 1586, 2221, 2585 |
| AciI | CCGC | 3 cut(s) | 6, 1024, 1059 |
| AclWI | GGATC | 5 cut(s) | 1193, 1446, 1668, 2294, 2307 |
| AcoI | YGGCCR | 2 cut(s) | 474, 1888 |
| AcsI | RAATTY | 8 cut(s) | 300, 467, 689, 1004, 1451, 1673, 2094, 2207 |
| AcuI | CTGAAG | 2 cut(s) | 735, 983 |
| AcyI | GRCGYC | 1 cut(s) | 84 |
| AdeI | CACNNNGTG | 1 cut(s) | 483 |
| AfaI | GTAC | 5 cut(s) | 76, 594, 711, 1366, 1588 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 87, 142, 719, 2015, 2149, 2296, 2539 |
| AflIII | ACRYGT | 2 cut(s) | 153, 1053 |
| AjnI | CCWGG | 2 cut(s) | 1885, 2295 |
| AluBI | AGCT | 6 cut(s) | 308, 1348, 1393, 1570, 1615, 1993 |
| AluI | AGCT | 6 cut(s) | 308, 1348, 1393, 1570, 1615, 1993 |
| Alw21I | GWGCWC | 2 cut(s) | 101, 777 |
| Alw26I | GTCTC | 1 cut(s) | 152 |
| Alw44I | GTGCAC | 1 cut(s) | 97 |
| AlwI | GGATC | 5 cut(s) | 1193, 1446, 1668, 2294, 2307 |
| Ama87I | CYCGRG | 1 cut(s) | 745 |
| AoxI | GGCC | 6 cut(s) | 89, 390, 474, 1133, 1888, 2260 |
| ApaLI | GTGCAC | 1 cut(s) | 97 |
| ApeKI | GCWGC | 2 cut(s) | 1993, 2213 |
| ApoI | RAATTY | 8 cut(s) | 300, 467, 689, 1004, 1451, 1673, 2094, 2207 |
| ArsI | GACNNNNNNTTYG | 6 cut(s) | 1414, 1446, 1636, 1668, 1888, 1920 |
| AseI | ATTAAT | 2 cut(s) | 1175, 2550 |
| Asp718I | GGTACC | 2 cut(s) | 1364, 1586 |
| AspLEI | GCGC | 1 cut(s) | 106 |
| AspS9I | GGNCC | 2 cut(s) | 89, 2006 |
| AsuC2I | CCSGG | 1 cut(s) | 2151 |
| AsuHPI | GGTGA | 2 cut(s) | 62, 2554 |
| AsuII | TTCGAA | 1 cut(s) | 935 |
| AvaI | CYCGRG | 1 cut(s) | 745 |
| AvaII | GGWCC | 1 cut(s) | 2006 |
| AxyI | CCTNAGG | 1 cut(s) | 435 |
| BaeGI | GKGCMC | 1 cut(s) | 101 |
| BalI | TGGCCA | 2 cut(s) | 476, 1890 |
| BamHI | GGATCC | 1 cut(s) | 2299 |
| BanI | GGYRCC | 5 cut(s) | 563, 1364, 1586, 2221, 2585 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 667, 699 |
| BauI | CACGAG | 1 cut(s) | 2676 |
| BbsI | GAAGAC | 3 cut(s) | 124, 285, 1256 |
| Bbv12I | GWGCWC | 2 cut(s) | 101, 777 |
| BbvI | GCAGC | 2 cut(s) | 1980, 2200 |
| BccI | CCATC | 5 cut(s) | 1899, 1930, 2300, 2343, 2576 |
| BceAI | ACGGC | 3 cut(s) | 37, 117, 2235 |
| BciT130I | CCWGG | 2 cut(s) | 1887, 2297 |
| BcnI | CCSGG | 1 cut(s) | 2151 |
| BcoDI | GTCTC | 1 cut(s) | 152 |
| BfoI | RGCGCY | 1 cut(s) | 107 |
| BglII | AGATCT | 5 cut(s) | 505, 958, 1114, 1720, 2080 |
| BisI | GCNGC | 2 cut(s) | 1994, 2214 |
| BlsI | GCNGC | 2 cut(s) | 1995, 2215 |
| Bme1390I | CCNGG | 3 cut(s) | 1887, 2151, 2297 |
| Bme18I | GGWCC | 1 cut(s) | 2006 |
| BmeT110I | CYCGRG | 1 cut(s) | 745 |
| BmgT120I | GGNCC | 2 cut(s) | 89, 2006 |
| BmiI | GGNNCC | 7 cut(s) | 273, 565, 1366, 1588, 2223, 2301, 2587 |
| BmrFI | CCNGG | 3 cut(s) | 1887, 2151, 2297 |
| BmsI | GCATC | 4 cut(s) | 157, 237, 1819, 1924 |
| BpiI | GAAGAC | 3 cut(s) | 124, 285, 1256 |
| BpmI | CTGGAG | 2 cut(s) | 111, 258 |
| Bpu14I | TTCGAA | 1 cut(s) | 935 |
| BpuEI | CTTGAG | 2 cut(s) | 1885, 2249 |
| BpuMI | CCSGG | 1 cut(s) | 2151 |
| BsaBI | GATNNNNATC | 2 cut(s) | 1221, 2285 |
| BsaHI | GRCGYC | 1 cut(s) | 84 |
| BsaI | GGTCTC | 1 cut(s) | 152 |
| BsaJI | CCNNGG | 3 cut(s) | 141, 2150, 2217 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 62, 92, 109, 139 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 87, 142, 719, 2015, 2149, 2296, 2539 |
| Bse1I | ACTGG | 2 cut(s) | 128, 2327 |
| Bse21I | CCTNAGG | 1 cut(s) | 435 |
| Bse3DI | GCAATG | 1 cut(s) | 2139 |
| Bse8I | GATNNNNATC | 2 cut(s) | 1221, 2285 |
| BseBI | CCWGG | 2 cut(s) | 1887, 2297 |
| BseDI | CCNNGG | 3 cut(s) | 141, 2150, 2217 |
| BseGI | GGATG | 4 cut(s) | 172, 2292, 2354, 2517 |
| BseJI | GATNNNNATC | 2 cut(s) | 1221, 2285 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 87, 142, 719, 2015, 2149, 2296, 2539 |
| BseMI | GCAATG | 1 cut(s) | 2139 |
| BseMII | CTCAG | 4 cut(s) | 38, 75, 180, 2446 |
| BseNI | ACTGG | 2 cut(s) | 128, 2327 |
| BseRI | GAGGAG | 2 cut(s) | 98, 114 |
| BseSI | GKGCMC | 1 cut(s) | 101 |
| BseXI | GCAGC | 2 cut(s) | 1980, 2200 |
| BsgI | GTGCAG | 2 cut(s) | 568, 2651 |
| BshFI | GGCC | 6 cut(s) | 91, 392, 476, 1135, 1890, 2262 |
| BshNI | GGYRCC | 5 cut(s) | 563, 1364, 1586, 2221, 2585 |
| BsiHKAI | GWGCWC | 2 cut(s) | 101, 777 |
| BsiHKCI | CYCGRG | 1 cut(s) | 745 |
| BsiSI | CCGG | 2 cut(s) | 81, 2150 |
| BslFI | GGGAC | 2 cut(s) | 894, 2169 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 87, 142, 719, 2015, 2149, 2296, 2539 |
| BsmAI | GTCTC | 1 cut(s) | 152 |
| BsmFI | GGGAC | 2 cut(s) | 894, 2169 |
| BsmI | GAATGC | 3 cut(s) | 927, 1318, 1540 |
| BsnI | GGCC | 6 cut(s) | 91, 392, 476, 1135, 1890, 2262 |
| Bso31I | GGTCTC | 1 cut(s) | 152 |
| BsoBI | CYCGRG | 1 cut(s) | 745 |
| Bsp119I | TTCGAA | 1 cut(s) | 935 |
| Bsp1286I | GDGCHC | 2 cut(s) | 101, 777 |
| BspACI | CCGC | 3 cut(s) | 6, 1024, 1059 |
| BspANI | GGCC | 6 cut(s) | 91, 392, 476, 1135, 1890, 2262 |
| BspCNI | CTCAG | 4 cut(s) | 37, 74, 181, 2445 |
| BspLI | GGNNCC | 7 cut(s) | 273, 565, 1366, 1588, 2223, 2301, 2587 |
| BspPI | GGATC | 5 cut(s) | 1193, 1446, 1668, 2294, 2307 |
| BspT104I | TTCGAA | 1 cut(s) | 935 |
| BspT107I | GGYRCC | 5 cut(s) | 563, 1364, 1586, 2221, 2585 |
| BspTNI | GGTCTC | 1 cut(s) | 152 |
| BsrDI | GCAATG | 1 cut(s) | 2139 |
| BsrI | ACTGG | 2 cut(s) | 128, 2327 |
| BssECI | CCNNGG | 3 cut(s) | 141, 2150, 2217 |
| BssNI | GRCGYC | 1 cut(s) | 84 |
| BssSI | CACGAG | 1 cut(s) | 2676 |
| Bst2BI | CACGAG | 1 cut(s) | 2676 |
| Bst2UI | CCWGG | 2 cut(s) | 1887, 2297 |
| Bst4CI | ACNGT | 7 cut(s) | 74, 483, 1019, 1147, 1873, 2126, 2371 |
| BstACI | GRCGYC | 1 cut(s) | 84 |
| BstBI | TTCGAA | 1 cut(s) | 935 |
| BstC8I | GCNNGC | 1 cut(s) | 2179 |
| BstDEI | CTNAG | 6 cut(s) | 24, 61, 189, 435, 1799, 2432 |
| BstDSI | CCRYGG | 2 cut(s) | 141, 2217 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 717, 2013 |
| BstF5I | GGATG | 4 cut(s) | 172, 2292, 2354, 2517 |
| BstH2I | RGCGCY | 1 cut(s) | 107 |
| BstHHI | GCGC | 1 cut(s) | 106 |
| BstMAI | GTCTC | 1 cut(s) | 152 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 851, 1990, 2174, 2219 |
| BstNI | CCWGG | 2 cut(s) | 1887, 2297 |
| BstNSI | RCATGY | 3 cut(s) | 157, 993, 1057 |
| BstSCI | CCNGG | 3 cut(s) | 1885, 2149, 2295 |
| BstSLI | GKGCMC | 1 cut(s) | 101 |
| BstV1I | GCAGC | 2 cut(s) | 1980, 2200 |
| BstV2I | GAAGAC | 3 cut(s) | 124, 285, 1256 |
| BstX2I | RGATCY | 9 cut(s) | 505, 958, 1114, 1185, 1438, 1660, 1720, 2080, 2299 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 2322 |
| BstYI | RGATCY | 9 cut(s) | 505, 958, 1114, 1185, 1438, 1660, 1720, 2080, 2299 |
| Bsu36I | CCTNAGG | 1 cut(s) | 435 |
| BsuRI | GGCC | 6 cut(s) | 91, 392, 476, 1135, 1890, 2262 |
| BtgI | CCRYGG | 2 cut(s) | 141, 2217 |
| BtsCI | GGATG | 4 cut(s) | 172, 2292, 2354, 2517 |
| BtsI | GCAGTG | 1 cut(s) | 117 |
| BtsIMutI | CAGTG | 4 cut(s) | 117, 1024, 1869, 2320 |
| Cac8I | GCNNGC | 1 cut(s) | 2179 |
| CfoI | GCGC | 1 cut(s) | 106 |
| Cfr13I | GGNCC | 2 cut(s) | 89, 2006 |
| CseI | GACGC | 3 cut(s) | 73, 1054, 1875 |
| Csp6I | GTAC | 5 cut(s) | 75, 593, 710, 1365, 1587 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 1365, 1400, 1587, 1622 |
| CviQI | GTAC | 5 cut(s) | 75, 593, 710, 1365, 1587 |
| DdeI | CTNAG | 6 cut(s) | 24, 61, 189, 435, 1799, 2432 |
| DraI | TTTAAA | 1 cut(s) | 981 |
| DraIII | CACNNNGTG | 1 cut(s) | 483 |
| EaeI | YGGCCR | 2 cut(s) | 474, 1888 |
| Eco147I | AGGCCT | 2 cut(s) | 1135, 2262 |
| Eco31I | GGTCTC | 1 cut(s) | 152 |
| Eco47I | GGWCC | 1 cut(s) | 2006 |
| Eco57I | CTGAAG | 2 cut(s) | 735, 983 |
| Eco81I | CCTNAGG | 1 cut(s) | 435 |
| Eco88I | CYCGRG | 1 cut(s) | 745 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 717, 2013 |
| EcoRII | CCWGG | 2 cut(s) | 1885, 2295 |
| EcoT22I | ATGCAT | 1 cut(s) | 172 |
| FaqI | GGGAC | 2 cut(s) | 894, 2169 |
| FauNDI | CATATG | 2 cut(s) | 1105, 1708 |
| Fnu4HI | GCNGC | 2 cut(s) | 1994, 2214 |
| FokI | GGATG | 4 cut(s) | 179, 2279, 2361, 2524 |
| Fsp4HI | GCNGC | 2 cut(s) | 1994, 2214 |
| GlaI | GCGC | 1 cut(s) | 105 |
| GluI | GCNGC | 2 cut(s) | 1994, 2214 |
| GsuI | CTGGAG | 2 cut(s) | 111, 258 |
| HaeII | RGCGCY | 1 cut(s) | 107 |
| HaeIII | GGCC | 6 cut(s) | 91, 392, 476, 1135, 1890, 2262 |
| HapII | CCGG | 2 cut(s) | 81, 2150 |
| HgaI | GACGC | 3 cut(s) | 73, 1054, 1875 |
| HhaI | GCGC | 1 cut(s) | 106 |
| Hin1I | GRCGYC | 1 cut(s) | 84 |
| Hin6I | GCGC | 1 cut(s) | 104 |
| HinP1I | GCGC | 1 cut(s) | 104 |
| HinfI | GANTC | 9 cut(s) | 215, 419, 461, 1163, 1301, 1523, 1858, 2072, 2477 |
| HpaII | CCGG | 2 cut(s) | 81, 2150 |
| HphI | GGTGA | 2 cut(s) | 62, 2554 |
| Hpy166II | GTNNAC | 3 cut(s) | 99, 710, 1015 |
| Hpy8I | GTNNAC | 3 cut(s) | 99, 710, 1015 |
| Hpy99I | CGWCG | 5 cut(s) | 58, 89, 1869, 2045, 2493 |
| HpyAV | CCTTC | 3 cut(s) | 382, 710, 763 |
| HpyCH4III | ACNGT | 7 cut(s) | 74, 483, 1019, 1147, 1873, 2126, 2371 |
| HpyCH4IV | ACGT | 2 cut(s) | 1761, 2043 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 851, 1990, 2174, 2219 |
| HpyF3I | CTNAG | 6 cut(s) | 24, 61, 189, 435, 1799, 2432 |
| HpySE526I | ACGT | 2 cut(s) | 1761, 2043 |
| Hsp92I | GRCGYC | 1 cut(s) | 84 |
| HspAI | GCGC | 1 cut(s) | 104 |
| KpnI | GGTACC | 2 cut(s) | 1368, 1590 |
| LmnI | GCTCC | 3 cut(s) | 111, 127, 277 |
| Lsp1109I | GCAGC | 2 cut(s) | 1980, 2200 |
| LweI | GCATC | 4 cut(s) | 157, 237, 1819, 1924 |
| MaeII | ACGT | 2 cut(s) | 1761, 2043 |
| MaeIII | GTNAC | 2 cut(s) | 68, 1141 |
| MfeI | CAATTG | 3 cut(s) | 575, 648, 1560 |
| MflI | RGATCY | 9 cut(s) | 505, 958, 1114, 1185, 1438, 1660, 1720, 2080, 2299 |
| MhlI | GDGCHC | 2 cut(s) | 101, 777 |
| MlsI | TGGCCA | 2 cut(s) | 476, 1890 |
| MluNI | TGGCCA | 2 cut(s) | 476, 1890 |
| MlyI | GAGTC | 3 cut(s) | 224, 455, 1172 |
| MmeI | TCCRAC | 2 cut(s) | 219, 1908 |
| Mox20I | TGGCCA | 2 cut(s) | 476, 1890 |
| Mph1103I | ATGCAT | 1 cut(s) | 172 |
| MscI | TGGCCA | 2 cut(s) | 476, 1890 |
| MseI | TTAA | 9 cut(s) | 873, 980, 1175, 1179, 1221, 1748, 1958, 2172, 2550 |
| MslI | CAYNNNNRTG | 3 cut(s) | 1260, 2426, 2510 |
| Msp20I | TGGCCA | 2 cut(s) | 476, 1890 |
| MspI | CCGG | 2 cut(s) | 81, 2150 |
| MspR9I | CCNGG | 3 cut(s) | 1887, 2151, 2297 |
| MunI | CAATTG | 3 cut(s) | 575, 648, 1560 |
| Mva1269I | GAATGC | 3 cut(s) | 927, 1318, 1540 |
| MvaI | CCWGG | 2 cut(s) | 1887, 2297 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 851, 1990, 2174, 2219 |
| NciI | CCSGG | 1 cut(s) | 2151 |
| NdeI | CATATG | 2 cut(s) | 1105, 1708 |
| NlaIV | GGNNCC | 7 cut(s) | 273, 565, 1366, 1588, 2223, 2301, 2587 |
| NmeAIII | GCCGAG | 1 cut(s) | 418 |
| NmuCI | GTSAC | 1 cut(s) | 68 |
| NsiI | ATGCAT | 1 cut(s) | 172 |
| NspI | RCATGY | 3 cut(s) | 157, 993, 1057 |
| NspV | TTCGAA | 1 cut(s) | 935 |
| PacI | TTAATTAA | 1 cut(s) | 1179 |
| PaeR7I | CTCGAG | 1 cut(s) | 745 |
| PceI | AGGCCT | 2 cut(s) | 1135, 2262 |
| PciI | ACATGT | 2 cut(s) | 153, 1053 |
| PctI | GAATGC | 3 cut(s) | 927, 1318, 1540 |
| PfeI | GAWTC | 6 cut(s) | 419, 1301, 1523, 1858, 2072, 2477 |
| PfoI | TCCNGGA | 1 cut(s) | 2295 |
| PkrI | GCNGC | 2 cut(s) | 1995, 2215 |
| PleI | GAGTC | 3 cut(s) | 223, 455, 1171 |
| PpsI | GAGTC | 3 cut(s) | 223, 455, 1171 |
| PscI | ACATGT | 2 cut(s) | 153, 1053 |
| PshBI | ATTAAT | 2 cut(s) | 1175, 2550 |
| PsiI | TTATAA | 1 cut(s) | 1820 |
| Psp6I | CCWGG | 2 cut(s) | 1885, 2295 |
| PspGI | CCWGG | 2 cut(s) | 1885, 2295 |
| PspN4I | GGNNCC | 7 cut(s) | 273, 565, 1366, 1588, 2223, 2301, 2587 |
| PspPI | GGNCC | 2 cut(s) | 89, 2006 |
| PspXI | VCTCGAGB | 1 cut(s) | 745 |
| PsuI | RGATCY | 9 cut(s) | 505, 958, 1114, 1185, 1438, 1660, 1720, 2080, 2299 |
| RsaI | GTAC | 5 cut(s) | 76, 594, 711, 1366, 1588 |
| RsaNI | GTAC | 5 cut(s) | 75, 593, 710, 1365, 1587 |
| RseI | CAYNNNNRTG | 3 cut(s) | 1260, 2426, 2510 |
| SaqAI | TTAA | 9 cut(s) | 873, 980, 1175, 1179, 1221, 1748, 1958, 2172, 2550 |
| SatI | GCNGC | 2 cut(s) | 1994, 2214 |
| Sau96I | GGNCC | 2 cut(s) | 89, 2006 |
| SchI | GAGTC | 3 cut(s) | 224, 455, 1172 |
| ScrFI | CCNGG | 3 cut(s) | 1887, 2151, 2297 |
| SduI | GDGCHC | 2 cut(s) | 101, 777 |
| SfaNI | GCATC | 4 cut(s) | 157, 237, 1819, 1924 |
| Sfr274I | CTCGAG | 1 cut(s) | 745 |
| SfuI | TTCGAA | 1 cut(s) | 935 |
| SinI | GGWCC | 1 cut(s) | 2006 |
| SlaI | CTCGAG | 1 cut(s) | 745 |
| SmiI | ATTTAAAT | 1 cut(s) | 981 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 1260, 2426, 2510 |
| SmlI | CTYRAG | 3 cut(s) | 745, 1900, 2264 |
| SmoI | CTYRAG | 3 cut(s) | 745, 1900, 2264 |
| SseBI | AGGCCT | 2 cut(s) | 1135, 2262 |
| SsiI | CCGC | 3 cut(s) | 6, 1024, 1059 |
| SspI | AATATT | 3 cut(s) | 1096, 1327, 1549 |
| StuI | AGGCCT | 2 cut(s) | 1135, 2262 |
| StyD4I | CCNGG | 3 cut(s) | 1885, 2149, 2295 |
| SwaI | ATTTAAAT | 1 cut(s) | 981 |
| TaaI | ACNGT | 7 cut(s) | 74, 483, 1019, 1147, 1873, 2126, 2371 |
| TaiI | ACGT | 2 cut(s) | 1764, 2046 |
| TfiI | GAWTC | 6 cut(s) | 419, 1301, 1523, 1858, 2072, 2477 |
| Tru1I | TTAA | 9 cut(s) | 873, 980, 1175, 1179, 1221, 1748, 1958, 2172, 2550 |
| Tru9I | TTAA | 9 cut(s) | 873, 980, 1175, 1179, 1221, 1748, 1958, 2172, 2550 |
| TscAI | CASTG | 4 cut(s) | 124, 1024, 1876, 2327 |
| TseFI | GTSAC | 1 cut(s) | 68 |
| TseI | GCWGC | 2 cut(s) | 1993, 2213 |
| Tsp45I | GTSAC | 1 cut(s) | 68 |
| TspGWI | ACGGA | 1 cut(s) | 84 |
| TspRI | CASTG | 4 cut(s) | 124, 1024, 1876, 2327 |
| VneI | GTGCAC | 1 cut(s) | 97 |
| VpaK11BI | GGWCC | 1 cut(s) | 2006 |
| VspI | ATTAAT | 2 cut(s) | 1175, 2550 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 717, 2013 |
| XapI | RAATTY | 8 cut(s) | 300, 467, 689, 1004, 1451, 1673, 2094, 2207 |
| XbaI | TCTAGA | 2 cut(s) | 2068, 2083 |
| XceI | RCATGY | 3 cut(s) | 157, 993, 1057 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 605 |
| XhoI | CTCGAG | 1 cut(s) | 745 |
| Zsp2I | ATGCAT | 1 cut(s) | 172 |