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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 2 cut(s) | 999, 1521 |
| AccB1I | GGYRCC | 2 cut(s) | 947, 1583 |
| AciI | CCGC | 1 cut(s) | 264 |
| AclI | AACGTT | 1 cut(s) | 1166 |
| AclWI | GGATC | 3 cut(s) | 680, 1089, 1244 |
| AcsI | RAATTY | 2 cut(s) | 494, 1022 |
| AcuI | CTGAAG | 2 cut(s) | 459, 1349 |
| AdeI | CACNNNGTG | 1 cut(s) | 660 |
| AfaI | GTAC | 7 cut(s) | 182, 299, 711, 989, 1119, 1294, 1350 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 1545 |
| AjnI | CCWGG | 1 cut(s) | 1539 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 120, 152, 597, 629 |
| Alw21I | GWGCWC | 2 cut(s) | 656, 1523 |
| Alw26I | GTCTC | 3 cut(s) | 272, 397, 883 |
| Alw44I | GTGCAC | 1 cut(s) | 652 |
| AlwI | GGATC | 3 cut(s) | 680, 1089, 1244 |
| AoxI | GGCC | 2 cut(s) | 1323, 1456 |
| ApaLI | GTGCAC | 1 cut(s) | 652 |
| ApeKI | GCWGC | 5 cut(s) | 593, 628, 1129, 1196, 1381 |
| ApoI | RAATTY | 2 cut(s) | 494, 1022 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 492, 524 |
| AseI | ATTAAT | 1 cut(s) | 1226 |
| AspA2I | CCTAGG | 1 cut(s) | 290 |
| AspS9I | GGNCC | 1 cut(s) | 1324 |
| AsuHPI | GGTGA | 2 cut(s) | 52, 523 |
| AvrII | CCTAGG | 1 cut(s) | 290 |
| BaeGI | GKGCMC | 2 cut(s) | 656, 950 |
| BanI | GGYRCC | 2 cut(s) | 947, 1583 |
| Bbv12I | GWGCWC | 2 cut(s) | 656, 1523 |
| BbvI | GCAGC | 5 cut(s) | 580, 640, 1141, 1183, 1393 |
| BccI | CCATC | 2 cut(s) | 745, 764 |
| BciT130I | CCWGG | 1 cut(s) | 1541 |
| BclI | TGATCA | 2 cut(s) | 1104, 1302 |
| BcoDI | GTCTC | 3 cut(s) | 272, 397, 883 |
| BfaI | CTAG | 4 cut(s) | 75, 291, 318, 1058 |
| BfmI | CTRYAG | 1 cut(s) | 594 |
| BfuAI | ACCTGC | 2 cut(s) | 999, 1521 |
| BisI | GCNGC | 5 cut(s) | 594, 629, 1130, 1197, 1382 |
| BlnI | CCTAGG | 1 cut(s) | 290 |
| BlpI | GCTNAGC | 1 cut(s) | 1517 |
| BlsI | GCNGC | 5 cut(s) | 595, 630, 1131, 1198, 1383 |
| Bme1390I | CCNGG | 1 cut(s) | 1541 |
| BmgT120I | GGNCC | 1 cut(s) | 1324 |
| BmiI | GGNNCC | 2 cut(s) | 949, 1585 |
| BmrFI | CCNGG | 1 cut(s) | 1541 |
| BmrI | ACTGGG | 1 cut(s) | 77 |
| BmsI | GCATC | 3 cut(s) | 682, 704, 1368 |
| BmuI | ACTGGG | 1 cut(s) | 77 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1517 |
| BpuEI | CTTGAG | 2 cut(s) | 254, 342 |
| BsaBI | GATNNNNATC | 1 cut(s) | 257 |
| BsaI | GGTCTC | 1 cut(s) | 272 |
| BsaJI | CCNNGG | 3 cut(s) | 290, 1539, 1588 |
| BsaWI | WCCGGW | 1 cut(s) | 172 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 1545 |
| Bse1I | ACTGG | 3 cut(s) | 72, 1011, 1472 |
| Bse3DI | GCAATG | 1 cut(s) | 1191 |
| Bse8I | GATNNNNATC | 1 cut(s) | 257 |
| BseBI | CCWGG | 1 cut(s) | 1541 |
| BseDI | CCNNGG | 3 cut(s) | 290, 1539, 1588 |
| BseGI | GGATG | 4 cut(s) | 250, 394, 1118, 1383 |
| BseJI | GATNNNNATC | 1 cut(s) | 257 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 1545 |
| BseMI | GCAATG | 1 cut(s) | 1191 |
| BseMII | CTCAG | 3 cut(s) | 340, 813, 1508 |
| BseNI | ACTGG | 3 cut(s) | 72, 1011, 1472 |
| BseRI | GAGGAG | 1 cut(s) | 237 |
| BseSI | GKGCMC | 2 cut(s) | 656, 950 |
| BseXI | GCAGC | 5 cut(s) | 580, 640, 1141, 1183, 1393 |
| BseYI | CCCAGC | 2 cut(s) | 458, 943 |
| BshFI | GGCC | 2 cut(s) | 1325, 1458 |
| BshNI | GGYRCC | 2 cut(s) | 947, 1583 |
| BsiHKAI | GWGCWC | 2 cut(s) | 656, 1523 |
| BsiSI | CCGG | 1 cut(s) | 173 |
| BslFI | GGGAC | 4 cut(s) | 155, 166, 181, 1522 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 1545 |
| BsmAI | GTCTC | 3 cut(s) | 272, 397, 883 |
| BsmFI | GGGAC | 4 cut(s) | 155, 166, 181, 1522 |
| BsnI | GGCC | 2 cut(s) | 1325, 1458 |
| Bso31I | GGTCTC | 1 cut(s) | 272 |
| Bsp1286I | GDGCHC | 3 cut(s) | 656, 950, 1523 |
| Bsp1407I | TGTACA | 2 cut(s) | 180, 1348 |
| Bsp143I | GATC | 7 cut(s) | 16, 685, 1094, 1104, 1144, 1236, 1302 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1517 |
| Bsp19I | CCATGG | 1 cut(s) | 1588 |
| BspACI | CCGC | 1 cut(s) | 264 |
| BspANI | GGCC | 2 cut(s) | 1325, 1458 |
| BspCNI | CTCAG | 3 cut(s) | 339, 812, 1509 |
| BspLI | GGNNCC | 2 cut(s) | 949, 1585 |
| BspMAI | CTGCAG | 1 cut(s) | 598 |
| BspMI | ACCTGC | 2 cut(s) | 999, 1521 |
| BspPI | GGATC | 3 cut(s) | 680, 1089, 1244 |
| BspT107I | GGYRCC | 2 cut(s) | 947, 1583 |
| BspTNI | GGTCTC | 1 cut(s) | 272 |
| BsrDI | GCAATG | 1 cut(s) | 1191 |
| BsrGI | TGTACA | 2 cut(s) | 180, 1348 |
| BsrI | ACTGG | 3 cut(s) | 72, 1011, 1472 |
| BssECI | CCNNGG | 3 cut(s) | 290, 1539, 1588 |
| BssMI | GATC | 7 cut(s) | 16, 685, 1094, 1104, 1144, 1236, 1302 |
| BssT1I | CCWWGG | 2 cut(s) | 290, 1588 |
| Bst2UI | CCWGG | 1 cut(s) | 1541 |
| Bst4CI | ACNGT | 7 cut(s) | 13, 40, 85, 218, 1279, 1292, 1436 |
| Bst6I | CTCTTC | 2 cut(s) | 142, 435 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 455, 1193 |
| BstAUI | TGTACA | 2 cut(s) | 180, 1348 |
| BstC8I | GCNNGC | 1 cut(s) | 411 |
| BstDEI | CTNAG | 6 cut(s) | 326, 791, 799, 879, 1517, 1573 |
| BstDSI | CCRYGG | 1 cut(s) | 1588 |
| BstF5I | GGATG | 4 cut(s) | 250, 394, 1118, 1383 |
| BstKTI | GATC | 7 cut(s) | 19, 688, 1097, 1107, 1147, 1239, 1305 |
| BstMAI | GTCTC | 3 cut(s) | 272, 397, 883 |
| BstMBI | GATC | 7 cut(s) | 16, 685, 1094, 1104, 1144, 1236, 1302 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 198, 233, 455, 1193, 1590 |
| BstNI | CCWGG | 1 cut(s) | 1541 |
| BstSCI | CCNGG | 1 cut(s) | 1539 |
| BstSFI | CTRYAG | 1 cut(s) | 594 |
| BstSLI | GKGCMC | 2 cut(s) | 656, 950 |
| BstV1I | GCAGC | 5 cut(s) | 580, 640, 1141, 1183, 1393 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 385 |
| BsuRI | GGCC | 2 cut(s) | 1325, 1458 |
| BtgI | CCRYGG | 1 cut(s) | 1588 |
| BtsCI | GGATG | 4 cut(s) | 250, 394, 1118, 1383 |
| BtsI | GCAGTG | 1 cut(s) | 656 |
| BtsIMutI | CAGTG | 3 cut(s) | 656, 1018, 1441 |
| BveI | ACCTGC | 2 cut(s) | 999, 1521 |
| Cac8I | GCNNGC | 1 cut(s) | 411 |
| Cfr13I | GGNCC | 1 cut(s) | 1324 |
| Csp6I | GTAC | 7 cut(s) | 181, 298, 710, 988, 1118, 1293, 1349 |
| CviQI | GTAC | 7 cut(s) | 181, 298, 710, 988, 1118, 1293, 1349 |
| DdeI | CTNAG | 6 cut(s) | 326, 791, 799, 879, 1517, 1573 |
| DpnI | GATC | 7 cut(s) | 18, 687, 1096, 1106, 1146, 1238, 1304 |
| DpnII | GATC | 7 cut(s) | 16, 685, 1094, 1104, 1144, 1236, 1302 |
| DraI | TTTAAA | 1 cut(s) | 556 |
| DraIII | CACNNNGTG | 1 cut(s) | 660 |
| Eam1104I | CTCTTC | 2 cut(s) | 142, 435 |
| EarI | CTCTTC | 2 cut(s) | 142, 435 |
| Eco130I | CCWWGG | 2 cut(s) | 290, 1588 |
| Eco147I | AGGCCT | 1 cut(s) | 1458 |
| Eco31I | GGTCTC | 1 cut(s) | 272 |
| Eco57I | CTGAAG | 2 cut(s) | 459, 1349 |
| EcoRI | GAATTC | 1 cut(s) | 494 |
| EcoRII | CCWGG | 1 cut(s) | 1539 |
| EcoT14I | CCWWGG | 2 cut(s) | 290, 1588 |
| EcoT22I | ATGCAT | 1 cut(s) | 697 |
| ErhI | CCWWGG | 2 cut(s) | 290, 1588 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1413, 1445 |
| FaqI | GGGAC | 4 cut(s) | 155, 166, 181, 1522 |
| FbaI | TGATCA | 2 cut(s) | 1104, 1302 |
| Fnu4HI | GCNGC | 5 cut(s) | 594, 629, 1130, 1197, 1382 |
| FokI | GGATG | 4 cut(s) | 257, 401, 1125, 1390 |
| Fsp4HI | GCNGC | 5 cut(s) | 594, 629, 1130, 1197, 1382 |
| FspBI | CTAG | 4 cut(s) | 75, 291, 318, 1058 |
| GluI | GCNGC | 5 cut(s) | 594, 629, 1130, 1197, 1382 |
| GsaI | CCCAGC | 2 cut(s) | 462, 947 |
| HaeIII | GGCC | 2 cut(s) | 1325, 1458 |
| HapII | CCGG | 1 cut(s) | 173 |
| HindIII | AAGCTT | 1 cut(s) | 728 |
| HinfI | GANTC | 2 cut(s) | 797, 1243 |
| HpaII | CCGG | 1 cut(s) | 173 |
| HphI | GGTGA | 2 cut(s) | 52, 523 |
| Hpy166II | GTNNAC | 6 cut(s) | 183, 654, 1118, 1270, 1349, 1351 |
| Hpy188I | TCNGA | 6 cut(s) | 101, 500, 580, 742, 802, 1288 |
| Hpy188III | TCNNGA | 4 cut(s) | 359, 545, 689, 1240 |
| Hpy8I | GTNNAC | 6 cut(s) | 183, 654, 1118, 1270, 1349, 1351 |
| Hpy99I | CGWCG | 2 cut(s) | 17, 908 |
| HpyAV | CCTTC | 6 cut(s) | 361, 439, 972, 1058, 1448, 1546 |
| HpyCH4III | ACNGT | 7 cut(s) | 13, 40, 85, 218, 1279, 1292, 1436 |
| HpyCH4IV | ACGT | 2 cut(s) | 1166, 1523 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 198, 233, 455, 1193, 1590 |
| HpyF3I | CTNAG | 6 cut(s) | 326, 791, 799, 879, 1517, 1573 |
| HpySE526I | ACGT | 2 cut(s) | 1166, 1523 |
| Ksp22I | TGATCA | 2 cut(s) | 1104, 1302 |
| Kzo9I | GATC | 7 cut(s) | 16, 685, 1094, 1104, 1144, 1236, 1302 |
| LmnI | GCTCC | 1 cut(s) | 224 |
| Lsp1109I | GCAGC | 5 cut(s) | 580, 640, 1141, 1183, 1393 |
| LweI | GCATC | 3 cut(s) | 682, 704, 1368 |
| MaeI | CTAG | 4 cut(s) | 75, 291, 318, 1058 |
| MaeII | ACGT | 2 cut(s) | 1166, 1523 |
| MaeIII | GTNAC | 4 cut(s) | 618, 638, 794, 1360 |
| MalI | GATC | 7 cut(s) | 18, 687, 1096, 1106, 1146, 1238, 1304 |
| MboI | GATC | 7 cut(s) | 16, 685, 1094, 1104, 1144, 1236, 1302 |
| MfeI | CAATTG | 2 cut(s) | 644, 702 |
| MhlI | GDGCHC | 3 cut(s) | 656, 950, 1523 |
| MlyI | GAGTC | 2 cut(s) | 791, 1237 |
| MmeI | TCCRAC | 1 cut(s) | 59 |
| Mph1103I | ATGCAT | 1 cut(s) | 697 |
| MslI | CAYNNNNRTG | 2 cut(s) | 383, 469 |
| MspA1I | CMGCKG | 1 cut(s) | 409 |
| MspI | CCGG | 1 cut(s) | 173 |
| MspR9I | CCNGG | 1 cut(s) | 1541 |
| MunI | CAATTG | 2 cut(s) | 644, 702 |
| MvaI | CCWGG | 1 cut(s) | 1541 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 198, 233, 455, 1193, 1590 |
| NcoI | CCATGG | 1 cut(s) | 1588 |
| NdeII | GATC | 7 cut(s) | 16, 685, 1094, 1104, 1144, 1236, 1302 |
| NlaIV | GGNNCC | 2 cut(s) | 949, 1585 |
| NmuCI | GTSAC | 2 cut(s) | 638, 794 |
| NsiI | ATGCAT | 1 cut(s) | 697 |
| PacI | TTAATTAA | 1 cut(s) | 1230 |
| PceI | AGGCCT | 1 cut(s) | 1458 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1381 |
| PkrI | GCNGC | 5 cut(s) | 595, 630, 1131, 1198, 1383 |
| PleI | GAGTC | 2 cut(s) | 791, 1237 |
| PpsI | GAGTC | 2 cut(s) | 791, 1237 |
| PshBI | ATTAAT | 1 cut(s) | 1226 |
| Psp1406I | AACGTT | 1 cut(s) | 1166 |
| Psp6I | CCWGG | 1 cut(s) | 1539 |
| PspFI | CCCAGC | 2 cut(s) | 458, 943 |
| PspGI | CCWGG | 1 cut(s) | 1539 |
| PspN4I | GGNNCC | 2 cut(s) | 949, 1585 |
| PspPI | GGNCC | 1 cut(s) | 1324 |
| PstI | CTGCAG | 1 cut(s) | 598 |
| PvuII | CAGCTG | 1 cut(s) | 409 |
| RsaI | GTAC | 7 cut(s) | 182, 299, 711, 989, 1119, 1294, 1350 |
| RsaNI | GTAC | 7 cut(s) | 181, 298, 710, 988, 1118, 1293, 1349 |
| RseI | CAYNNNNRTG | 2 cut(s) | 383, 469 |
| SatI | GCNGC | 5 cut(s) | 594, 629, 1130, 1197, 1382 |
| Sau3AI | GATC | 7 cut(s) | 16, 685, 1094, 1104, 1144, 1236, 1302 |
| Sau96I | GGNCC | 1 cut(s) | 1324 |
| SchI | GAGTC | 2 cut(s) | 791, 1237 |
| ScrFI | CCNGG | 1 cut(s) | 1541 |
| SduI | GDGCHC | 3 cut(s) | 656, 950, 1523 |
| SfaNI | GCATC | 3 cut(s) | 682, 704, 1368 |
| SfcI | CTRYAG | 1 cut(s) | 594 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 383, 469 |
| SmlI | CTYRAG | 2 cut(s) | 269, 357 |
| SmoI | CTYRAG | 2 cut(s) | 269, 357 |
| SseBI | AGGCCT | 1 cut(s) | 1458 |
| SsiI | CCGC | 1 cut(s) | 264 |
| SspMI | CTAG | 4 cut(s) | 75, 291, 318, 1058 |
| StuI | AGGCCT | 1 cut(s) | 1458 |
| StyD4I | CCNGG | 1 cut(s) | 1539 |
| StyI | CCWWGG | 2 cut(s) | 290, 1588 |
| TaaI | ACNGT | 7 cut(s) | 13, 40, 85, 218, 1279, 1292, 1436 |
| TaiI | ACGT | 2 cut(s) | 1169, 1526 |
| TaqI | TCGA | 2 cut(s) | 15, 906 |
| TatI | WGTACW | 4 cut(s) | 180, 297, 1117, 1348 |
| TscAI | CASTG | 3 cut(s) | 656, 1018, 1441 |
| TseFI | GTSAC | 2 cut(s) | 638, 794 |
| TseI | GCWGC | 5 cut(s) | 593, 628, 1129, 1196, 1381 |
| Tsp45I | GTSAC | 2 cut(s) | 638, 794 |
| TspGWI | ACGGA | 3 cut(s) | 824, 834, 1390 |
| TspRI | CASTG | 3 cut(s) | 656, 1018, 1441 |
| VneI | GTGCAC | 1 cut(s) | 652 |
| VspI | ATTAAT | 1 cut(s) | 1226 |
| XapI | RAATTY | 2 cut(s) | 494, 1022 |
| XmaJI | CCTAGG | 1 cut(s) | 290 |
| XspI | CTAG | 4 cut(s) | 75, 291, 318, 1058 |
| Zsp2I | ATGCAT | 1 cut(s) | 697 |