FvH4_7g31231

protein desumoylation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000268
Physical Location & Seq
Forward (+)
22608899 .. 22610414
1516 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g31231.t1

Sequence Viewer

Length: 1047 bp
ATGTCATCTCCGTATGTCAATATAGGGAGGAAATTAAATATGTCCAGCAACAGGACACTCAATTTGCGGTGGCTTGGTAACTTCAGGGGTCATTTTAATTACGACGATGATGATTGTTATATCCTAAGTTTCATATTTGAAGAATTTGATAACGAGTTTATAGTTTTCAGAACAGATAGCGTCCACCTAACTCGGGGTGATATAAGATGTTTAGATCCGGGACAACTTGTTAGTAATGCTCTTATAACTGCAGTACAATCAATTTTGCGGGCACCTGGGTCTCTTCAATGGTTCATTGGTCCATATCTTTCGGAGTCCACAATATTCGCAGAAGATCGTAAGAAATTATCAGAGTTTGCACTCACGGCGAAAGAGACTTTCAACTATGATTTCCGATACACTGTATTTGAGAAATGTGAAAAGATTTTCATTCCCCTCCTAGATAAAGGCATTCATGGGAATCATTGGTTCTTGATGGTAATAAAAATACCAAGTAAGGAAGTTGAGATATGGGATAGTTTGCCTTGTCGGACACGGGAGACTGCTCGAAATGAACTAGCTTCTATTTTGTTGAAAACACTGGACATCATGTTTGAGGATGACATTTACATATTTTTCCATGAAAGATGGTTATTCTCTTCATTTAAAATTTTTCATCCCGGTTGTGTTCCTATACAACCAAATGATTTTGATTGCGGCATTTATACTATAAAATTCATGGAAGATTTTGAGAATGCATCCAAGGCAGGGGATAAGTTTGATTCTGAGACCGAGCGTTTACGCATAGCTACGAAGTTGGTTAAGCATCCAGACAACCAAGCGCGTGTCGCTATGGAGAAAGCAATAGAGGACCAAGAAGCAGAAGACAGGACCACAAAGCTACCCAAAAAAAGGAAGAGAAAACAAGAGGACATAGCACCAATCGATAATGATATAGTCTTACGAACAAACCAAGTACATGCCAAAACACAAGTACATGCCAAAACCCAGGTACATGCCAAAAGGGGTCGTGGTCGACCTCCTGGCTCGACGAACAAGAAAAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C48

Protein Analysis

349

Amino Acids

40.5

Weight (kDa)

8.11

Isoelectric Point (pI)

39.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C48 PF02902 134 - 243 5.1e-17 Ulp1 protease family, C-terminal catalytic domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000268)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g23642 FvH4_2g09911 FvH4_2g09911 FvH4_2g09911 FvH4_3g18421 FvH4_4g05321 FvH4_6g28332 FvH4_7g31231
prunus_persica Prupe.2G063700_v2.0.a1 Prupe.5G238300_v2.0.a1 Prupe.6G153700_v2.0.a1 Prupe.7G017400_v2.0.a1 Prupe.7G070100_v2.0.a1 Prupe.7G070100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0345471 RchiOBHm_Chr1g0366901 RchiOBHm_Chr2g0162601 RchiOBHm_Chr6g0266661 RchiOBHm_Chr6g0266671
rosa_laevigata RLG00000005047 RLG00000007971 RLG00000008530 RLG00000009009 RLG00000009046 RLG00000014086 RLG00000017162 RLG00000017163 RLG00000017440 RLG00000019098 RLG00000022623 RLG00000024566 RLG00000027733 RLG00000029878 RLG00000029945 RLG00000030127 RLG00000030157 RLG00000031078 RLG00000031080 RLG00000034338 RLG00000034670
rosa_multiflora Rmu_sc0002106.1_g000007 Rmu_sc0002531.1_g000064 Rmu_sc0003433.1_g000005 Rmu_sc0004704.1_g000001 Rmu_sc0004704.1_g000002 Rmu_sc0004888.1_g000042 Rmu_sc0005599.1_g000031 Rmu_sc0006413.1_g000014 Rmu_sc0006413.1_g000018
rosa_roxburghii Rroxscaffold_1G00031940 Rroxscaffold_1G00032500 Rroxscaffold_1G00074770 Rroxscaffold_1G00074780 Rroxscaffold_1G00075150 Rroxscaffold_2G00125060 Rroxscaffold_2G00125070 Rroxscaffold_2G00125800 Rroxscaffold_2G00125820 Rroxscaffold_2G00139560 Rroxscaffold_2G00140550 Rroxscaffold_4G00314090 Rroxscaffold_6G00390050 Rroxscaffold_6G00390520 Rroxscaffold_6G00390530 Rroxscaffold_6G00428030 Rroxscaffold_7G00201570 Rroxscaffold_7G00201580 Rroxscaffold_7G00207070 Rroxscaffold_7G00207080 Rroxscaffold_7G00207240
rosa_rugosa Rorug01G0408000 Rorug01G0408100 Rorug01G0408100 Rorug01G0408200 Rorug02G0155200 Rorug02G0181500 Rorug02G0288400 Rorug03G0208600 Rorug03G0272300 Rorug06G0005500 Rorug06G0005600 Rorug06G0026300.1 Rorug06G0026400 Rorug06G0026500 Rorug06G0026600 Rorug06G0026600 Rorug06G0026600 Rorug06G0145800 Rorug07G0305200
rosa_samantha Rh1AG062100 Rh1BG131900 Rh1BG157000 Rh1CG021100 Rh1CG321600 Rh1DG188200 Rh2DG388300 Rh3AG320500 Rh3BG355400 Rh3CG352400 Rh3CG353200 Rh4AG045800 Rh4DG171700 Rh5AG196000 Rh5AG196100 Rh5CG346800 Rh6BG147600 Rh6BG147700 Rh6CG143200 Rh6CG143500 Rh6CG174600 Rh6CG391800 Rh6DG132100 Rh6DG132300 Rh6DG167100 Rh6DG167200 Rh7AG211600 Rh7BG307000 Rh7BG307300 Rh7BG398300
rosa_wichuraiana Rw0G001830 Rw0G001840 Rw0G018160 Rw0G018170 Rw3G028040 Rw5G017860 Rw5G026710 Rw6G012630 Rw6G012650 Rw6G012780 Rw6G012800 Rw7G019130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 245
AccB1I GGYRCC 1 cut(s) 271
AccI GTMKAC 1 cut(s) 1015
AccII CGCG 1 cut(s) 823
AciI CCGC 3 cut(s) 67, 268, 696
AclWI GGATC 1 cut(s) 209
AcsI RAATTY 3 cut(s) 143, 648, 713
AcuI CTGAAG 1 cut(s) 67
AfaI GTAC 4 cut(s) 255, 957, 975, 993
AfiI CCNNNNNNNGG 4 cut(s) 51, 193, 747, 891
AgsI TTSAA 4 cut(s) 140, 287, 382, 574
AjnI CCWGG 3 cut(s) 274, 987, 1021
AluBI AGCT 3 cut(s) 560, 788, 880
AluI AGCT 3 cut(s) 560, 788, 880
Alw26I GTCTC 4 cut(s) 285, 368, 533, 761
AlwI GGATC 1 cut(s) 209
Ama87I CYCGRG 1 cut(s) 192
ApoI RAATTY 3 cut(s) 143, 648, 713
ArsI GACNNNNNNTTYG 4 cut(s) 46, 78, 575, 607
AspLEI GCGC 1 cut(s) 823
AspS9I GGNCC 3 cut(s) 299, 850, 870
AsuC2I CCSGG 2 cut(s) 219, 660
AsuHPI GGTGA 1 cut(s) 209
AvaI CYCGRG 1 cut(s) 192
AvaII GGWCC 3 cut(s) 299, 850, 870
BaeGI GKGCMC 1 cut(s) 274
BanI GGYRCC 1 cut(s) 271
BbsI GAAGAC 1 cut(s) 870
BccI CCATC 2 cut(s) 469, 621
BceAI ACGGC 1 cut(s) 381
BciT130I CCWGG 3 cut(s) 276, 989, 1023
BcnI CCSGG 2 cut(s) 219, 660
BcoDI GTCTC 4 cut(s) 285, 368, 533, 761
BfaI CTAG 2 cut(s) 440, 557
BfmI CTRYAG 1 cut(s) 249
BisI GCNGC 1 cut(s) 697
BlsI GCNGC 1 cut(s) 698
Bme1390I CCNGG 5 cut(s) 219, 276, 660, 989, 1023
Bme18I GGWCC 3 cut(s) 299, 850, 870
BmeT110I CYCGRG 1 cut(s) 192
BmgT120I GGNCC 3 cut(s) 299, 850, 870
BmiI GGNNCC 1 cut(s) 273
BmrFI CCNGG 5 cut(s) 219, 276, 660, 989, 1023
BmsI GCATC 2 cut(s) 746, 814
BpiI GAAGAC 1 cut(s) 870
BpuMI CCSGG 2 cut(s) 219, 660
Bsa29I ATCGAT 1 cut(s) 924
BsaI GGTCTC 2 cut(s) 285, 761
BsaJI CCNNGG 3 cut(s) 275, 741, 987
Bsc4I CCNNNNNNNGG 4 cut(s) 51, 193, 747, 891
Bse1I ACTGG 1 cut(s) 585
BseBI CCWGG 3 cut(s) 276, 989, 1023
BseCI ATCGAT 1 cut(s) 924
BseDI CCNNGG 3 cut(s) 275, 741, 987
BseGI GGATG 4 cut(s) 604, 655, 737, 805
BseLI CCNNNNNNNGG 4 cut(s) 51, 193, 747, 891
BseMII CTCAG 1 cut(s) 756
BseNI ACTGG 1 cut(s) 585
BseSI GKGCMC 1 cut(s) 274
Bsh1236I CGCG 1 cut(s) 823
BshNI GGYRCC 1 cut(s) 271
BshVI ATCGAT 1 cut(s) 924
BsiHKCI CYCGRG 1 cut(s) 192
BsiSI CCGG 2 cut(s) 218, 660
BslFI GGGAC 1 cut(s) 234
BslI CCNNNNNNNGG 4 cut(s) 51, 193, 747, 891
BsmAI GTCTC 4 cut(s) 285, 368, 533, 761
BsmFI GGGAC 1 cut(s) 234
BsmI GAATGC 2 cut(s) 450, 739
Bso31I GGTCTC 2 cut(s) 285, 761
BsoBI CYCGRG 1 cut(s) 192
Bsp1286I GDGCHC 1 cut(s) 274
Bsp143I GATC 2 cut(s) 214, 334
BspACI CCGC 3 cut(s) 67, 268, 696
BspCNI CTCAG 1 cut(s) 757
BspDI ATCGAT 1 cut(s) 924
BspFNI CGCG 1 cut(s) 823
BspLI GGNNCC 1 cut(s) 273
BspMAI CTGCAG 1 cut(s) 253
BspPI GGATC 1 cut(s) 209
BspT107I GGYRCC 1 cut(s) 271
BspTNI GGTCTC 2 cut(s) 285, 761
BsrI ACTGG 1 cut(s) 585
BssECI CCNNGG 3 cut(s) 275, 741, 987
BssMI GATC 2 cut(s) 214, 334
BssT1I CCWWGG 1 cut(s) 741
Bst2UI CCWGG 3 cut(s) 276, 989, 1023
Bst4CI ACNGT 1 cut(s) 403
Bst6I CTCTTC 3 cut(s) 288, 643, 890
BstC8I GCNNGC 1 cut(s) 270
BstDEI CTNAG 2 cut(s) 125, 765
BstF5I GGATG 4 cut(s) 604, 655, 737, 805
BstFNI CGCG 1 cut(s) 823
BstHHI GCGC 1 cut(s) 823
BstKTI GATC 2 cut(s) 217, 337
BstMAI GTCTC 4 cut(s) 285, 368, 533, 761
BstMBI GATC 2 cut(s) 214, 334
BstMWI GCNNNNNNNGC 3 cut(s) 365, 743, 827
BstNI CCWGG 3 cut(s) 276, 989, 1023
BstNSI RCATGY 3 cut(s) 962, 980, 998
BstSCI CCNGG 5 cut(s) 217, 274, 658, 987, 1021
BstSFI CTRYAG 1 cut(s) 249
BstSLI GKGCMC 1 cut(s) 274
BstUI CGCG 1 cut(s) 823
BstV2I GAAGAC 1 cut(s) 870
BstX2I RGATCY 1 cut(s) 214
BstYI RGATCY 1 cut(s) 214
Bsu15I ATCGAT 1 cut(s) 924
BsuTUI ATCGAT 1 cut(s) 924
BtsCI GGATG 4 cut(s) 604, 655, 737, 805
BtsIMutI CAGTG 2 cut(s) 399, 578
Cac8I GCNNGC 1 cut(s) 270
CfoI GCGC 1 cut(s) 823
Cfr13I GGNCC 3 cut(s) 299, 850, 870
ClaI ATCGAT 1 cut(s) 924
CseI GACGC 1 cut(s) 169
Csp6I GTAC 4 cut(s) 254, 956, 974, 992
CviAII CATG 7 cut(s) 455, 589, 620, 718, 959, 977, 995
CviJI RGCY 5 cut(s) 73, 560, 788, 880, 1026
CviKI_1 RGCY 5 cut(s) 73, 560, 788, 880, 1026
CviQI GTAC 4 cut(s) 254, 956, 974, 992
DdeI CTNAG 2 cut(s) 125, 765
DpnI GATC 2 cut(s) 216, 336
DpnII GATC 2 cut(s) 214, 334
DraI TTTAAA 1 cut(s) 646
Eam1104I CTCTTC 3 cut(s) 288, 643, 890
EarI CTCTTC 3 cut(s) 288, 643, 890
Eco130I CCWWGG 1 cut(s) 741
Eco31I GGTCTC 2 cut(s) 285, 761
Eco47I GGWCC 3 cut(s) 299, 850, 870
Eco57I CTGAAG 1 cut(s) 67
Eco88I CYCGRG 1 cut(s) 192
EcoRII CCWGG 3 cut(s) 274, 987, 1021
EcoT14I CCWWGG 1 cut(s) 741
EcoT22I ATGCAT 1 cut(s) 739
ErhI CCWWGG 1 cut(s) 741
FaeI CATG 7 cut(s) 458, 592, 623, 721, 962, 980, 998
FaqI GGGAC 1 cut(s) 234
FatI CATG 7 cut(s) 454, 588, 619, 717, 958, 976, 994
FauI CCCGC 1 cut(s) 261
FblI GTMKAC 1 cut(s) 1015
Fnu4HI GCNGC 1 cut(s) 697
FokI GGATG 4 cut(s) 611, 642, 724, 792
Fsp4HI GCNGC 1 cut(s) 697
FspBI CTAG 2 cut(s) 440, 557
GlaI GCGC 1 cut(s) 822
GluI GCNGC 1 cut(s) 697
HapII CCGG 2 cut(s) 218, 660
HgaI GACGC 1 cut(s) 169
HhaI GCGC 1 cut(s) 823
Hin1II CATG 7 cut(s) 458, 592, 623, 721, 962, 980, 998
Hin6I GCGC 1 cut(s) 821
HinP1I GCGC 1 cut(s) 821
HincII GTYRAC 1 cut(s) 1016
HindII GTYRAC 1 cut(s) 1016
HinfI GANTC 3 cut(s) 314, 460, 761
HpaII CCGG 2 cut(s) 218, 660
HphI GGTGA 1 cut(s) 209
Hpy166II GTNNAC 4 cut(s) 184, 318, 779, 1016
Hpy188I TCNGA 6 cut(s) 170, 313, 352, 395, 531, 766
Hpy188III TCNNGA 2 cut(s) 472, 809
Hpy8I GTNNAC 4 cut(s) 184, 318, 779, 1016
Hpy99I CGWCG 2 cut(s) 107, 1033
HpyCH4III ACNGT 1 cut(s) 403
HpyCH4V TGCA 3 cut(s) 251, 359, 737
HpyF10VI GCNNNNNNNGC 3 cut(s) 365, 743, 827
HpyF3I CTNAG 2 cut(s) 125, 765
Hsp92II CATG 7 cut(s) 458, 592, 623, 721, 962, 980, 998
HspAI GCGC 1 cut(s) 821
Kzo9I GATC 2 cut(s) 214, 334
LweI GCATC 2 cut(s) 746, 814
MaeI CTAG 2 cut(s) 440, 557
MaeIII GTNAC 1 cut(s) 77
MalI GATC 2 cut(s) 216, 336
MboI GATC 2 cut(s) 214, 334
MboII GAAGA 7 cut(s) 152, 275, 344, 630, 734, 875, 907
MflI RGATCY 1 cut(s) 214
MhlI GDGCHC 1 cut(s) 274
MluCI AATT 8 cut(s) 32, 61, 97, 143, 261, 344, 648, 713
MlyI GAGTC 1 cut(s) 323
MmeI TCCRAC 1 cut(s) 509
MnlI CCTC 6 cut(s) 21, 446, 589, 841, 901, 1029
Mph1103I ATGCAT 1 cut(s) 739
MseI TTAA 4 cut(s) 35, 96, 645, 801
MspI CCGG 2 cut(s) 218, 660
MspR9I CCNGG 5 cut(s) 219, 276, 660, 989, 1023
Mva1269I GAATGC 2 cut(s) 450, 739
MvaI CCWGG 3 cut(s) 276, 989, 1023
MvnI CGCG 1 cut(s) 823
MwoI GCNNNNNNNGC 3 cut(s) 365, 743, 827
NciI CCSGG 2 cut(s) 219, 660
NdeII GATC 2 cut(s) 214, 334
NlaIII CATG 7 cut(s) 458, 592, 623, 721, 962, 980, 998
NlaIV GGNNCC 1 cut(s) 273
NsiI ATGCAT 1 cut(s) 739
NspI RCATGY 3 cut(s) 962, 980, 998
PctI GAATGC 2 cut(s) 450, 739
PfeI GAWTC 2 cut(s) 460, 761
PfoI TCCNGGA 1 cut(s) 217
PkrI GCNGC 1 cut(s) 698
PleI GAGTC 1 cut(s) 322
PpsI GAGTC 1 cut(s) 322
PsiI TTATAA 1 cut(s) 245
Psp6I CCWGG 3 cut(s) 274, 987, 1021
PspGI CCWGG 3 cut(s) 274, 987, 1021
PspN4I GGNNCC 1 cut(s) 273
PspPI GGNCC 3 cut(s) 299, 850, 870
PstI CTGCAG 1 cut(s) 253
PsuI RGATCY 1 cut(s) 214
RsaI GTAC 4 cut(s) 255, 957, 975, 993
RsaNI GTAC 4 cut(s) 254, 956, 974, 992
SalI GTCGAC 1 cut(s) 1014
SaqAI TTAA 4 cut(s) 35, 96, 645, 801
SatI GCNGC 1 cut(s) 697
Sau3AI GATC 2 cut(s) 214, 334
Sau96I GGNCC 3 cut(s) 299, 850, 870
SchI GAGTC 1 cut(s) 323
ScrFI CCNGG 5 cut(s) 219, 276, 660, 989, 1023
SduI GDGCHC 1 cut(s) 274
SetI ASST 7 cut(s) 189, 277, 562, 790, 882, 993, 1021
SfaNI GCATC 2 cut(s) 746, 814
SfcI CTRYAG 1 cut(s) 249
SinI GGWCC 3 cut(s) 299, 850, 870
Sse9I AATT 8 cut(s) 32, 61, 97, 143, 261, 344, 648, 713
SsiI CCGC 3 cut(s) 67, 268, 696
SspI AATATT 1 cut(s) 324
SspMI CTAG 2 cut(s) 440, 557
StyD4I CCNGG 5 cut(s) 217, 274, 658, 987, 1021
StyI CCWWGG 1 cut(s) 741
TaaI ACNGT 1 cut(s) 403
TaqI TCGA 4 cut(s) 547, 924, 1015, 1028
TaqII GACCGA 1 cut(s) 785
TasI AATT 8 cut(s) 32, 61, 97, 143, 261, 344, 648, 713
TatI WGTACW 3 cut(s) 253, 955, 973
TauI GCSGC 1 cut(s) 699
TfiI GAWTC 2 cut(s) 460, 761
Tru1I TTAA 4 cut(s) 35, 96, 645, 801
Tru9I TTAA 4 cut(s) 35, 96, 645, 801
TscAI CASTG 2 cut(s) 406, 585
TspDTI ATGAA 9 cut(s) 121, 283, 418, 443, 567, 630, 636, 644, 706
TspRI CASTG 2 cut(s) 406, 585
VpaK11BI GGWCC 3 cut(s) 299, 850, 870
XapI RAATTY 3 cut(s) 143, 648, 713
XceI RCATGY 3 cut(s) 962, 980, 998
XmiI GTMKAC 1 cut(s) 1015
XspI CTAG 2 cut(s) 440, 557
Zsp2I ATGCAT 1 cut(s) 739
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.