RchiOBHm_Chr2g0162601

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Forward (+)
78283032 .. 78283696
665 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ53084

Sequence Viewer

Length: 495 bp
ATGGCTCGAAATGATCTTGTTTATTATGTCCTTTTGGCATTGGACACAATATTTGACACTAAAATCCAAAGCTGTTTCAAGAAAGGATGGTCGTTATGTTCATTCACAGTTTTCAATGTAGATGACATTCACATTCAACAAAACAACTTCGATTGTGGCATTTTCATGCTCAGATACATAATAAACTATGATAATCCATTGAAAGATGAGTTAGATTCCGTAAATCGTTGTGTGCAACTTGCCCTTTGGATGTTGAAGCACCCAAAGAACCAAGCATGGGTGAAAATTAATGAGGCTTTAGATAATGAAAACAAAAATGATGGTGCCAAGAACAAGATCAAGACAATAGAAGAAATTGACGAAGCTACTGGAAATAGTGTTGATCAACATCATGGCAAGAGCTGTTCACAAGTCGTGCAGAGAAAAACCTCAACACTACAAGCAAGGGGTCGTGGTCGCCCTCGTGGTGCAAAGAATAAAAGCTCTCGAAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

164

Amino Acids

18.84

Weight (kDa)

9.1

Isoelectric Point (pI)

31.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000268)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g23642 FvH4_2g09911 FvH4_2g09911 FvH4_2g09911 FvH4_3g18421 FvH4_4g05321 FvH4_6g28332 FvH4_7g31231
prunus_persica Prupe.2G063700_v2.0.a1 Prupe.5G238300_v2.0.a1 Prupe.6G153700_v2.0.a1 Prupe.7G017400_v2.0.a1 Prupe.7G070100_v2.0.a1 Prupe.7G070100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0345471 RchiOBHm_Chr1g0366901 RchiOBHm_Chr2g0162601 RchiOBHm_Chr6g0266661 RchiOBHm_Chr6g0266671
rosa_laevigata RLG00000005047 RLG00000007971 RLG00000008530 RLG00000009009 RLG00000009046 RLG00000014086 RLG00000017162 RLG00000017163 RLG00000017440 RLG00000019098 RLG00000022623 RLG00000024566 RLG00000027733 RLG00000029878 RLG00000029945 RLG00000030127 RLG00000030157 RLG00000031078 RLG00000031080 RLG00000034338 RLG00000034670
rosa_multiflora Rmu_sc0002106.1_g000007 Rmu_sc0002531.1_g000064 Rmu_sc0003433.1_g000005 Rmu_sc0004704.1_g000001 Rmu_sc0004704.1_g000002 Rmu_sc0004888.1_g000042 Rmu_sc0005599.1_g000031 Rmu_sc0006413.1_g000014 Rmu_sc0006413.1_g000018
rosa_roxburghii Rroxscaffold_1G00031940 Rroxscaffold_1G00032500 Rroxscaffold_1G00074770 Rroxscaffold_1G00074780 Rroxscaffold_1G00075150 Rroxscaffold_2G00125060 Rroxscaffold_2G00125070 Rroxscaffold_2G00125800 Rroxscaffold_2G00125820 Rroxscaffold_2G00139560 Rroxscaffold_2G00140550 Rroxscaffold_4G00314090 Rroxscaffold_6G00390050 Rroxscaffold_6G00390520 Rroxscaffold_6G00390530 Rroxscaffold_6G00428030 Rroxscaffold_7G00201570 Rroxscaffold_7G00201580 Rroxscaffold_7G00207070 Rroxscaffold_7G00207080 Rroxscaffold_7G00207240
rosa_rugosa Rorug01G0408000 Rorug01G0408100 Rorug01G0408100 Rorug01G0408200 Rorug02G0155200 Rorug02G0181500 Rorug02G0288400 Rorug03G0208600 Rorug03G0272300 Rorug06G0005500 Rorug06G0005600 Rorug06G0026300.1 Rorug06G0026400 Rorug06G0026500 Rorug06G0026600 Rorug06G0026600 Rorug06G0026600 Rorug06G0145800 Rorug07G0305200
rosa_samantha Rh1AG062100 Rh1BG131900 Rh1BG157000 Rh1CG021100 Rh1CG321600 Rh1DG188200 Rh2DG388300 Rh3AG320500 Rh3BG355400 Rh3CG352400 Rh3CG353200 Rh4AG045800 Rh4DG171700 Rh5AG196000 Rh5AG196100 Rh5CG346800 Rh6BG147600 Rh6BG147700 Rh6CG143200 Rh6CG143500 Rh6CG174600 Rh6CG391800 Rh6DG132100 Rh6DG132300 Rh6DG167100 Rh6DG167200 Rh7AG211600 Rh7BG307000 Rh7BG307300 Rh7BG398300
rosa_wichuraiana Rw0G001830 Rw0G001840 Rw0G018160 Rw0G018170 Rw3G028040 Rw5G017860 Rw5G026710 Rw6G012630 Rw6G012650 Rw6G012780 Rw6G012800 Rw7G019130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 323
AfiI CCNNNNNNNGG 1 cut(s) 277
AgsI TTSAA 5 cut(s) 79, 115, 137, 202, 256
AluBI AGCT 4 cut(s) 72, 365, 402, 483
AluI AGCT 4 cut(s) 72, 365, 402, 483
ArsI GACNNNNNNTTYG 2 cut(s) 35, 67
AseI ATTAAT 1 cut(s) 288
AsuHPI GGTGA 1 cut(s) 292
BanI GGYRCC 1 cut(s) 323
BauI CACGAG 1 cut(s) 462
BccI CCATC 2 cut(s) 81, 314
BclI TGATCA 1 cut(s) 382
BmiI GGNNCC 1 cut(s) 325
BsaBI GATNNNNATC 1 cut(s) 387
Bsc4I CCNNNNNNNGG 1 cut(s) 277
Bse1I ACTGG 1 cut(s) 373
Bse8I GATNNNNATC 1 cut(s) 387
BseGI GGATG 2 cut(s) 92, 255
BseJI GATNNNNATC 1 cut(s) 387
BseLI CCNNNNNNNGG 1 cut(s) 277
BseMII CTCAG 1 cut(s) 184
BseNI ACTGG 1 cut(s) 373
BsgI GTGCAG 1 cut(s) 437
BshNI GGYRCC 1 cut(s) 323
BslI CCNNNNNNNGG 1 cut(s) 277
Bsp143I GATC 3 cut(s) 13, 336, 382
BspCNI CTCAG 1 cut(s) 183
BspLI GGNNCC 1 cut(s) 325
BspT107I GGYRCC 1 cut(s) 323
BsrI ACTGG 1 cut(s) 373
BssMI GATC 3 cut(s) 13, 336, 382
BssSI CACGAG 1 cut(s) 462
Bst2BI CACGAG 1 cut(s) 462
Bst4CI ACNGT 1 cut(s) 109
BstDEI CTNAG 1 cut(s) 170
BstF5I GGATG 2 cut(s) 92, 255
BstKTI GATC 3 cut(s) 16, 339, 385
BstMBI GATC 3 cut(s) 13, 336, 382
BtsCI GGATG 2 cut(s) 92, 255
CviAII CATG 3 cut(s) 166, 276, 392
CviJI RGCY 6 cut(s) 5, 72, 296, 365, 402, 483
CviKI_1 RGCY 6 cut(s) 5, 72, 296, 365, 402, 483
DdeI CTNAG 1 cut(s) 170
DpnI GATC 3 cut(s) 15, 338, 384
DpnII GATC 3 cut(s) 13, 336, 382
FaeI CATG 3 cut(s) 169, 279, 395
FaiI YATR 7 cut(s) 27, 97, 167, 179, 189, 277, 393
FatI CATG 3 cut(s) 165, 275, 391
FbaI TGATCA 1 cut(s) 382
FokI GGATG 2 cut(s) 99, 262
Hin1II CATG 3 cut(s) 169, 279, 395
HinfI GANTC 1 cut(s) 215
HphI GGTGA 1 cut(s) 292
Hpy166II GTNNAC 1 cut(s) 407
Hpy188I TCNGA 1 cut(s) 173
Hpy188III TCNNGA 3 cut(s) 79, 340, 486
Hpy8I GTNNAC 1 cut(s) 407
HpyCH4III ACNGT 1 cut(s) 109
HpyCH4V TGCA 3 cut(s) 235, 418, 470
HpyF3I CTNAG 1 cut(s) 170
Hsp92II CATG 3 cut(s) 169, 279, 395
Ksp22I TGATCA 1 cut(s) 382
Kzo9I GATC 3 cut(s) 13, 336, 382
LpnPI CCDG 1 cut(s) 354
MalI GATC 3 cut(s) 15, 338, 384
MboI GATC 3 cut(s) 13, 336, 382
MboII GAAGA 1 cut(s) 362
MluCI AATT 2 cut(s) 285, 354
MnlI CCTC 3 cut(s) 286, 439, 471
MseI TTAA 1 cut(s) 288
MslI CAYNNNNRTG 1 cut(s) 164
NdeII GATC 3 cut(s) 13, 336, 382
NlaIII CATG 3 cut(s) 169, 279, 395
NlaIV GGNNCC 1 cut(s) 325
PfeI GAWTC 1 cut(s) 215
PshBI ATTAAT 1 cut(s) 288
PspN4I GGNNCC 1 cut(s) 325
RseI CAYNNNNRTG 1 cut(s) 164
SaqAI TTAA 1 cut(s) 288
Sau3AI GATC 3 cut(s) 13, 336, 382
SetI ASST 5 cut(s) 74, 367, 404, 431, 485
SmiMI CAYNNNNRTG 1 cut(s) 164
Sse9I AATT 2 cut(s) 285, 354
SspI AATATT 1 cut(s) 51
TaaI ACNGT 1 cut(s) 109
TaqI TCGA 3 cut(s) 7, 150, 487
TasI AATT 2 cut(s) 285, 354
TfiI GAWTC 1 cut(s) 215
Tru1I TTAA 1 cut(s) 288
Tru9I TTAA 1 cut(s) 288
TspDTI ATGAA 3 cut(s) 90, 154, 321
TspGWI ACGGA 1 cut(s) 208
VspI ATTAAT 1 cut(s) 288
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.