Rroxscaffold_1G00031940

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000268
Physical Location & Seq
Reverse (-)
45332175 .. 45332612
438 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00031940.1

Sequence Viewer

Length: 357 bp
ATGATTAAATTCTTGGAGGATTATGAGAATGCATTTAAATTAAACAGGCAATATCATTCTGTAAGGGAGTGTTTGGGCATAGCTCTCACCTTGTTGAAGCATCCAAACAACCAAGCACTCAACAATATTGTTGAAGCTAGACAATGGTCACTACAAAAAACTATAGGCAAGAAACGTGCACCAAAGAAAATGAAGACAGATCAAGACAACCTAGCACGCAATGATATTGATGAAGGTTTGCAAAGGTTTCCAAAGAAAATGAAGGCAATCCAAGAAATAGATGCAGCCAATGCGAACAACAAAAAGAGTCATGGTCGGCCTCGTGGCTCAAGAATAAAGCTAAGAAATAACCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

118

Amino Acids

13.72

Weight (kDa)

10.25

Isoelectric Point (pI)

43.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000268)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g23642 FvH4_2g09911 FvH4_2g09911 FvH4_2g09911 FvH4_3g18421 FvH4_4g05321 FvH4_6g28332 FvH4_7g31231
prunus_persica Prupe.2G063700_v2.0.a1 Prupe.5G238300_v2.0.a1 Prupe.6G153700_v2.0.a1 Prupe.7G017400_v2.0.a1 Prupe.7G070100_v2.0.a1 Prupe.7G070100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0345471 RchiOBHm_Chr1g0366901 RchiOBHm_Chr2g0162601 RchiOBHm_Chr6g0266661 RchiOBHm_Chr6g0266671
rosa_laevigata RLG00000005047 RLG00000007971 RLG00000008530 RLG00000009009 RLG00000009046 RLG00000014086 RLG00000017162 RLG00000017163 RLG00000017440 RLG00000019098 RLG00000022623 RLG00000024566 RLG00000027733 RLG00000029878 RLG00000029945 RLG00000030127 RLG00000030157 RLG00000031078 RLG00000031080 RLG00000034338 RLG00000034670
rosa_multiflora Rmu_sc0002106.1_g000007 Rmu_sc0002531.1_g000064 Rmu_sc0003433.1_g000005 Rmu_sc0004704.1_g000001 Rmu_sc0004704.1_g000002 Rmu_sc0004888.1_g000042 Rmu_sc0005599.1_g000031 Rmu_sc0006413.1_g000014 Rmu_sc0006413.1_g000018
rosa_roxburghii Rroxscaffold_1G00031940 Rroxscaffold_1G00032500 Rroxscaffold_1G00074770 Rroxscaffold_1G00074780 Rroxscaffold_1G00075150 Rroxscaffold_2G00125060 Rroxscaffold_2G00125070 Rroxscaffold_2G00125800 Rroxscaffold_2G00125820 Rroxscaffold_2G00139560 Rroxscaffold_2G00140550 Rroxscaffold_4G00314090 Rroxscaffold_6G00390050 Rroxscaffold_6G00390520 Rroxscaffold_6G00390530 Rroxscaffold_6G00428030 Rroxscaffold_7G00201570 Rroxscaffold_7G00201580 Rroxscaffold_7G00207070 Rroxscaffold_7G00207080 Rroxscaffold_7G00207240
rosa_rugosa Rorug01G0408000 Rorug01G0408100 Rorug01G0408100 Rorug01G0408200 Rorug02G0155200 Rorug02G0181500 Rorug02G0288400 Rorug03G0208600 Rorug03G0272300 Rorug06G0005500 Rorug06G0005600 Rorug06G0026300.1 Rorug06G0026400 Rorug06G0026500 Rorug06G0026600 Rorug06G0026600 Rorug06G0026600 Rorug06G0145800 Rorug07G0305200
rosa_samantha Rh1AG062100 Rh1BG131900 Rh1BG157000 Rh1CG021100 Rh1CG321600 Rh1DG188200 Rh2DG388300 Rh3AG320500 Rh3BG355400 Rh3CG352400 Rh3CG353200 Rh4AG045800 Rh4DG171700 Rh5AG196000 Rh5AG196100 Rh5CG346800 Rh6BG147600 Rh6BG147700 Rh6CG143200 Rh6CG143500 Rh6CG174600 Rh6CG391800 Rh6DG132100 Rh6DG132300 Rh6DG167100 Rh6DG167200 Rh7AG211600 Rh7BG307000 Rh7BG307300 Rh7BG398300
rosa_wichuraiana Rw0G001830 Rw0G001840 Rw0G018160 Rw0G018170 Rw3G028040 Rw5G017860 Rw5G026710 Rw6G012630 Rw6G012650 Rw6G012780 Rw6G012800 Rw7G019130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 8
AgsI TTSAA 2 cut(s) 97, 134
AluBI AGCT 3 cut(s) 83, 137, 340
AluI AGCT 3 cut(s) 83, 137, 340
Alw21I GWGCWC 1 cut(s) 181
Alw44I GTGCAC 1 cut(s) 177
AoxI GGCC 1 cut(s) 317
ApaLI GTGCAC 1 cut(s) 177
ApeKI GCWGC 1 cut(s) 284
ApoI RAATTY 1 cut(s) 8
AsuHPI GGTGA 1 cut(s) 79
BaeGI GKGCMC 1 cut(s) 181
BauI CACGAG 1 cut(s) 321
BbsI GAAGAC 1 cut(s) 200
Bbv12I GWGCWC 1 cut(s) 181
BbvI GCAGC 1 cut(s) 296
BfaI CTAG 2 cut(s) 138, 212
BfmI CTRYAG 1 cut(s) 162
BisI GCNGC 1 cut(s) 285
BlsI GCNGC 1 cut(s) 286
BmsI GCATC 2 cut(s) 109, 271
BoxI GACNNNNGTC 1 cut(s) 145
BpiI GAAGAC 1 cut(s) 200
BpuEI CTTGAG 1 cut(s) 313
Bse3DI GCAATG 1 cut(s) 226
BseGI GGATG 1 cut(s) 100
BseMI GCAATG 1 cut(s) 226
BseSI GKGCMC 1 cut(s) 181
BseXI GCAGC 1 cut(s) 296
BshFI GGCC 1 cut(s) 319
BsiHKAI GWGCWC 1 cut(s) 181
BsmI GAATGC 1 cut(s) 34
BsnI GGCC 1 cut(s) 319
Bsp1286I GDGCHC 1 cut(s) 181
Bsp143I GATC 1 cut(s) 199
BspANI GGCC 1 cut(s) 319
BsrDI GCAATG 1 cut(s) 226
BssMI GATC 1 cut(s) 199
BssSI CACGAG 1 cut(s) 321
Bst2BI CACGAG 1 cut(s) 321
BstAPI GCANNNNNTGC 1 cut(s) 290
BstC8I GCNNGC 1 cut(s) 217
BstDEI CTNAG 1 cut(s) 341
BstF5I GGATG 1 cut(s) 100
BstKTI GATC 1 cut(s) 202
BstMBI GATC 1 cut(s) 199
BstMWI GCNNNNNNNGC 1 cut(s) 290
BstPAI GACNNNNGTC 1 cut(s) 145
BstSFI CTRYAG 1 cut(s) 162
BstSLI GKGCMC 1 cut(s) 181
BstV1I GCAGC 1 cut(s) 296
BstV2I GAAGAC 1 cut(s) 200
BsuRI GGCC 1 cut(s) 319
BtsCI GGATG 1 cut(s) 100
Cac8I GCNNGC 1 cut(s) 217
CviAII CATG 1 cut(s) 311
CviJI RGCY 6 cut(s) 83, 137, 287, 319, 327, 340
CviKI_1 RGCY 6 cut(s) 83, 137, 287, 319, 327, 340
DdeI CTNAG 1 cut(s) 341
DpnI GATC 1 cut(s) 201
DpnII GATC 1 cut(s) 199
DraI TTTAAA 1 cut(s) 37
EcoT22I ATGCAT 1 cut(s) 34
FaeI CATG 1 cut(s) 314
FaiI YATR 4 cut(s) 24, 80, 164, 312
FatI CATG 1 cut(s) 310
Fnu4HI GCNGC 1 cut(s) 285
FokI GGATG 1 cut(s) 87
Fsp4HI GCNGC 1 cut(s) 285
FspBI CTAG 2 cut(s) 138, 212
GluI GCNGC 1 cut(s) 285
HaeIII GGCC 1 cut(s) 319
Hin1II CATG 1 cut(s) 314
HinfI GANTC 1 cut(s) 307
HphI GGTGA 1 cut(s) 79
Hpy166II GTNNAC 1 cut(s) 179
Hpy188III TCNNGA 2 cut(s) 203, 330
Hpy8I GTNNAC 1 cut(s) 179
HpyAV CCTTC 2 cut(s) 227, 256
HpyCH4IV ACGT 1 cut(s) 175
HpyCH4V TGCA 4 cut(s) 32, 179, 241, 284
HpyF10VI GCNNNNNNNGC 1 cut(s) 290
HpyF3I CTNAG 1 cut(s) 341
HpySE526I ACGT 1 cut(s) 175
Hsp92II CATG 1 cut(s) 314
Kzo9I GATC 1 cut(s) 199
LpnPI CCDG 1 cut(s) 31
Lsp1109I GCAGC 1 cut(s) 296
LweI GCATC 2 cut(s) 109, 271
MaeI CTAG 2 cut(s) 138, 212
MaeII ACGT 1 cut(s) 175
MaeIII GTNAC 1 cut(s) 147
MalI GATC 1 cut(s) 201
MboI GATC 1 cut(s) 199
MboII GAAGA 1 cut(s) 205
MhlI GDGCHC 1 cut(s) 181
MluCI AATT 2 cut(s) 8, 38
MlyI GAGTC 1 cut(s) 316
MnlI CCTC 2 cut(s) 10, 330
Mph1103I ATGCAT 1 cut(s) 34
MseI TTAA 3 cut(s) 6, 36, 41
Mva1269I GAATGC 1 cut(s) 34
MwoI GCNNNNNNNGC 1 cut(s) 290
NdeII GATC 1 cut(s) 199
NlaIII CATG 1 cut(s) 314
NmuCI GTSAC 1 cut(s) 147
NsiI ATGCAT 1 cut(s) 34
PctI GAATGC 1 cut(s) 34
PkrI GCNGC 1 cut(s) 286
PleI GAGTC 1 cut(s) 315
PpsI GAGTC 1 cut(s) 315
PshAI GACNNNNGTC 1 cut(s) 145
SaqAI TTAA 3 cut(s) 6, 36, 41
SatI GCNGC 1 cut(s) 285
Sau3AI GATC 1 cut(s) 199
SchI GAGTC 1 cut(s) 316
SduI GDGCHC 1 cut(s) 181
SetI ASST 8 cut(s) 85, 92, 139, 178, 213, 238, 248, 342
SfaNI GCATC 2 cut(s) 109, 271
SfcI CTRYAG 1 cut(s) 162
SmiI ATTTAAAT 1 cut(s) 37
SmlI CTYRAG 1 cut(s) 328
SmoI CTYRAG 1 cut(s) 328
Sse9I AATT 2 cut(s) 8, 38
SspI AATATT 1 cut(s) 127
SspMI CTAG 2 cut(s) 138, 212
SwaI ATTTAAAT 1 cut(s) 37
TaiI ACGT 1 cut(s) 178
TasI AATT 2 cut(s) 8, 38
Tru1I TTAA 3 cut(s) 6, 36, 41
Tru9I TTAA 3 cut(s) 6, 36, 41
TseFI GTSAC 1 cut(s) 147
TseI GCWGC 1 cut(s) 284
Tsp45I GTSAC 1 cut(s) 147
TspDTI ATGAA 3 cut(s) 206, 246, 275
VneI GTGCAC 1 cut(s) 177
XapI RAATTY 1 cut(s) 8
XspI CTAG 2 cut(s) 138, 212
Zsp2I ATGCAT 1 cut(s) 34
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.