Rmu_sc0006413.1_g000014

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006413.1
OG0000268
Physical Location & Seq
Reverse (-)
117217 .. 120090
2874 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006413.1_g000014.1.cds

Sequence Viewer

Length: 1299 bp
atgaaacccaacgcaaagacaaactatgctgttgcaaatccatctgtagttagagttggcaggaacaatgtagagtatgagtttggtggggtaaaacctaaaatcttgcgatgccgtccaaagctgtttaaagatgtcgtttcgagattttccgatgaaaaaaaagttgcagtagaagaaatgggttttgggctgttgttgcagctccagtgtgagcacctgcagcttggtttgtgtggttggttgattgatagatttgatcccagcaagttttccattgaggtacatggcaagagattcaatcttggtccaaccgactttgagaacataatgggggtcaaagatggaggacatgatgttgaaatccgtggctcaaaggctgacatacaagaattaaaggatatccactttggcaacagatatcgaatatgcaatatgagtgaaatagctgagaagttgaaagagacgaataatgtagatgacaactttagagttgggtttgttctatttgcattggccacctttctttgtccatctagttcaggtgatttgacagcaaagtttctgcatccactaagggacatcaatggtataaaattcaaaaattgggcgactttttcattcagttttcttgttgaaagccttggtacatttaagaagaaaaatacaacttctatcggtgggtgtgtactattcttgaagctgttttactttgatctcgtcgttcatggaagaacgtttgtaaatagatcattgacgcctattgttgcatggagggaaaaggaggaaacaaagttagtggagtggatcggacaaaatggggggtttaatagtttggacattgccattgcttatgatcgtatagcctcaatcccaatcagtgctgatgaagatgagatggtggctgtgaggaatgatcacacagaggttgcaacagttgaaccacagtcacaacaaaagacaaatgacattactcttgtttacaagcgtagagcctctgctagttttgagaacagtgtggtggccttaaggaatgatctcgcaatgttacacaaaaaggttaccaaatttaaacgagcactacggcaaaagacaaatgatgataaggcagctgaactggaagctaaacttggtagtgagatgagcaagattgaaggccttacttattggcaggtctttcaagccactaatattttagcgaccaaatatgatctggtaacaatgtttcttcccatgtctgagcaaagcaaaaaggcatttgttctaaatctgttagaacatggcacccatggcttatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMG_box

Protein Analysis

432

Amino Acids

48.84

Weight (kDa)

8.8

Isoelectric Point (pI)

32.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000268)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g23642 FvH4_2g09911 FvH4_2g09911 FvH4_2g09911 FvH4_3g18421 FvH4_4g05321 FvH4_6g28332 FvH4_7g31231
prunus_persica Prupe.2G063700_v2.0.a1 Prupe.5G238300_v2.0.a1 Prupe.6G153700_v2.0.a1 Prupe.7G017400_v2.0.a1 Prupe.7G070100_v2.0.a1 Prupe.7G070100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0345471 RchiOBHm_Chr1g0366901 RchiOBHm_Chr2g0162601 RchiOBHm_Chr6g0266661 RchiOBHm_Chr6g0266671
rosa_laevigata RLG00000005047 RLG00000007971 RLG00000008530 RLG00000009009 RLG00000009046 RLG00000014086 RLG00000017162 RLG00000017163 RLG00000017440 RLG00000019098 RLG00000022623 RLG00000024566 RLG00000027733 RLG00000029878 RLG00000029945 RLG00000030127 RLG00000030157 RLG00000031078 RLG00000031080 RLG00000034338 RLG00000034670
rosa_multiflora Rmu_sc0002106.1_g000007 Rmu_sc0002531.1_g000064 Rmu_sc0003433.1_g000005 Rmu_sc0004704.1_g000001 Rmu_sc0004704.1_g000002 Rmu_sc0004888.1_g000042 Rmu_sc0005599.1_g000031 Rmu_sc0006413.1_g000014 Rmu_sc0006413.1_g000018
rosa_roxburghii Rroxscaffold_1G00031940 Rroxscaffold_1G00032500 Rroxscaffold_1G00074770 Rroxscaffold_1G00074780 Rroxscaffold_1G00075150 Rroxscaffold_2G00125060 Rroxscaffold_2G00125070 Rroxscaffold_2G00125800 Rroxscaffold_2G00125820 Rroxscaffold_2G00139560 Rroxscaffold_2G00140550 Rroxscaffold_4G00314090 Rroxscaffold_6G00390050 Rroxscaffold_6G00390520 Rroxscaffold_6G00390530 Rroxscaffold_6G00428030 Rroxscaffold_7G00201570 Rroxscaffold_7G00201580 Rroxscaffold_7G00207070 Rroxscaffold_7G00207080 Rroxscaffold_7G00207240
rosa_rugosa Rorug01G0408000 Rorug01G0408100 Rorug01G0408100 Rorug01G0408200 Rorug02G0155200 Rorug02G0181500 Rorug02G0288400 Rorug03G0208600 Rorug03G0272300 Rorug06G0005500 Rorug06G0005600 Rorug06G0026300.1 Rorug06G0026400 Rorug06G0026500 Rorug06G0026600 Rorug06G0026600 Rorug06G0026600 Rorug06G0145800 Rorug07G0305200
rosa_samantha Rh1AG062100 Rh1BG131900 Rh1BG157000 Rh1CG021100 Rh1CG321600 Rh1DG188200 Rh2DG388300 Rh3AG320500 Rh3BG355400 Rh3CG352400 Rh3CG353200 Rh4AG045800 Rh4DG171700 Rh5AG196000 Rh5AG196100 Rh5CG346800 Rh6BG147600 Rh6BG147700 Rh6CG143200 Rh6CG143500 Rh6CG174600 Rh6CG391800 Rh6DG132100 Rh6DG132300 Rh6DG167100 Rh6DG167200 Rh7AG211600 Rh7BG307000 Rh7BG307300 Rh7BG398300
rosa_wichuraiana Rw0G001830 Rw0G001840 Rw0G018160 Rw0G018170 Rw3G028040 Rw5G017860 Rw5G026710 Rw6G012630 Rw6G012650 Rw6G012780 Rw6G012800 Rw7G019130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 228
Acc36I ACCTGC 2 cut(s) 228, 1162
AccB1I GGYRCC 1 cut(s) 1283
AclI AACGTT 1 cut(s) 737
AclWI GGATC 2 cut(s) 254, 815
AcoI YGGCCR 1 cut(s) 516
AcsI RAATTY 2 cut(s) 596, 1067
AcyI GRCGYC 1 cut(s) 758
AfaI GTAC 3 cut(s) 285, 649, 690
AflII CTTAAG 1 cut(s) 1027
AgsI TTSAA 9 cut(s) 301, 362, 460, 601, 638, 700, 941, 1154, 1181
AjuI GAANNNNNNNTTGG 4 cut(s) 171, 203, 1113, 1145
AluBI AGCT 7 cut(s) 124, 205, 226, 449, 703, 1112, 1124
AluI AGCT 7 cut(s) 124, 205, 226, 449, 703, 1112, 1124
Alw21I GWGCWC 2 cut(s) 219, 1081
Alw26I GTCTC 1 cut(s) 458
AlwI GGATC 2 cut(s) 254, 815
AoxI GGCC 3 cut(s) 516, 1023, 1156
ApeKI GCWGC 3 cut(s) 202, 223, 1109
ApoI RAATTY 2 cut(s) 596, 1067
AspS9I GGNCC 1 cut(s) 308
AsuHPI GGTGA 1 cut(s) 557
AvaII GGWCC 1 cut(s) 308
BalI TGGCCA 1 cut(s) 518
BanI GGYRCC 1 cut(s) 1283
BarI GAAGNNNNNNTAC 2 cut(s) 692, 724
Bbv12I GWGCWC 2 cut(s) 219, 1081
BbvI GCAGC 3 cut(s) 214, 235, 1121
BccI CCATC 4 cut(s) 49, 338, 541, 892
BceAI ACGGC 2 cut(s) 99, 1100
BclI TGATCA 1 cut(s) 916
BcoDI GTCTC 1 cut(s) 458
BfaI CTAG 2 cut(s) 537, 1002
BfmI CTRYAG 2 cut(s) 45, 221
BfrI CTTAAG 1 cut(s) 1027
BfuAI ACCTGC 2 cut(s) 228, 1162
BisI GCNGC 3 cut(s) 203, 224, 1110
BlsI GCNGC 3 cut(s) 204, 225, 1111
Bme18I GGWCC 1 cut(s) 308
BmgT120I GGNCC 1 cut(s) 308
BmiI GGNNCC 1 cut(s) 1285
BmsI GCATC 2 cut(s) 101, 577
BpmI CTGGAG 1 cut(s) 191
BsaHI GRCGYC 1 cut(s) 758
BsaJI CCNNGG 3 cut(s) 367, 643, 1288
Bse1I ACTGG 2 cut(s) 208, 1122
Bse3DI GCAATG 3 cut(s) 840, 846, 1050
BseDI CCNNGG 3 cut(s) 367, 643, 1288
BseGI GGATG 1 cut(s) 568
BseMI GCAATG 3 cut(s) 840, 846, 1050
BseMII CTCAG 2 cut(s) 441, 1230
BseNI ACTGG 2 cut(s) 208, 1122
BseXI GCAGC 3 cut(s) 214, 235, 1121
BseYI CCCAGC 1 cut(s) 263
BshFI GGCC 3 cut(s) 518, 1025, 1158
BshNI GGYRCC 1 cut(s) 1283
BsiHKAI GWGCWC 2 cut(s) 219, 1081
BslFI GGGAC 1 cut(s) 593
BsmAI GTCTC 1 cut(s) 458
BsmBI CGTCTC 1 cut(s) 458
BsmFI GGGAC 1 cut(s) 593
BsnI GGCC 3 cut(s) 518, 1025, 1158
Bsp1286I GDGCHC 2 cut(s) 219, 1081
Bsp143I GATC 8 cut(s) 259, 715, 749, 807, 856, 916, 1036, 1210
Bsp19I CCATGG 1 cut(s) 1288
BspANI GGCC 3 cut(s) 518, 1025, 1158
BspCNI CTCAG 2 cut(s) 442, 1231
BspLI GGNNCC 1 cut(s) 1285
BspMAI CTGCAG 1 cut(s) 225
BspMI ACCTGC 2 cut(s) 228, 1162
BspPI GGATC 2 cut(s) 254, 815
BspT107I GGYRCC 1 cut(s) 1283
BspTI CTTAAG 1 cut(s) 1027
BsrDI GCAATG 3 cut(s) 840, 846, 1050
BsrI ACTGG 2 cut(s) 208, 1122
BssECI CCNNGG 3 cut(s) 367, 643, 1288
BssMI GATC 8 cut(s) 259, 715, 749, 807, 856, 916, 1036, 1210
BssNI GRCGYC 1 cut(s) 758
BssT1I CCWWGG 2 cut(s) 643, 1288
Bst4CI ACNGT 3 cut(s) 937, 948, 1016
BstACI GRCGYC 1 cut(s) 758
BstAFI CTTAAG 1 cut(s) 1027
BstDEI CTNAG 3 cut(s) 450, 575, 1239
BstDSI CCRYGG 2 cut(s) 367, 1288
BstEII GGTNACC 1 cut(s) 1060
BstF5I GGATG 1 cut(s) 568
BstKTI GATC 8 cut(s) 262, 718, 752, 810, 859, 919, 1039, 1213
BstMAI GTCTC 1 cut(s) 458
BstMBI GATC 8 cut(s) 259, 715, 749, 807, 856, 916, 1036, 1210
BstMWI GCNNNNNNNGC 3 cut(s) 199, 223, 1290
BstPI GGTNACC 1 cut(s) 1060
BstSFI CTRYAG 2 cut(s) 45, 221
BstV1I GCAGC 3 cut(s) 214, 235, 1121
BsuRI GGCC 3 cut(s) 518, 1025, 1158
BtgI CCRYGG 2 cut(s) 367, 1288
BtgZI GCGATG 1 cut(s) 124
BtsCI GGATG 1 cut(s) 568
BtsIMutI CAGTG 3 cut(s) 215, 886, 1021
BveI ACCTGC 2 cut(s) 228, 1162
Cfr13I GGNCC 1 cut(s) 308
CseI GACGC 1 cut(s) 766
Csp6I GTAC 3 cut(s) 284, 648, 689
CspCI CAANNNNNGTGG 2 cut(s) 780, 815
CviAII CATG 7 cut(s) 287, 353, 728, 771, 1234, 1280, 1289
CviQI GTAC 3 cut(s) 284, 648, 689
DdeI CTNAG 3 cut(s) 450, 575, 1239
DpnI GATC 8 cut(s) 261, 717, 751, 809, 858, 918, 1038, 1212
DpnII GATC 8 cut(s) 259, 715, 749, 807, 856, 916, 1036, 1210
DraI TTTAAA 2 cut(s) 130, 1072
EaeI YGGCCR 1 cut(s) 516
Eco130I CCWWGG 2 cut(s) 643, 1288
Eco147I AGGCCT 1 cut(s) 1158
Eco32I GATATC 2 cut(s) 403, 422
Eco47I GGWCC 1 cut(s) 308
Eco91I GGTNACC 1 cut(s) 1060
EcoO65I GGTNACC 1 cut(s) 1060
EcoRV GATATC 2 cut(s) 403, 422
EcoT14I CCWWGG 2 cut(s) 643, 1288
ErhI CCWWGG 2 cut(s) 643, 1288
Esp3I CGTCTC 1 cut(s) 458
FaeI CATG 7 cut(s) 290, 356, 731, 774, 1237, 1283, 1292
FalI AAGNNNNNCTT 2 cut(s) 1113, 1145
FaqI GGGAC 1 cut(s) 593
FatI CATG 7 cut(s) 286, 352, 727, 770, 1233, 1279, 1288
FbaI TGATCA 1 cut(s) 916
Fnu4HI GCNGC 3 cut(s) 203, 224, 1110
FokI GGATG 1 cut(s) 555
Fsp4HI GCNGC 3 cut(s) 203, 224, 1110
FspBI CTAG 2 cut(s) 537, 1002
GluI GCNGC 3 cut(s) 203, 224, 1110
GsaI CCCAGC 1 cut(s) 267
GsuI CTGGAG 1 cut(s) 191
HaeIII GGCC 3 cut(s) 518, 1025, 1158
HgaI GACGC 1 cut(s) 766
Hin1I GRCGYC 1 cut(s) 758
Hin1II CATG 7 cut(s) 290, 356, 731, 774, 1237, 1283, 1292
HinfI GANTC 1 cut(s) 297
HphI GGTGA 1 cut(s) 557
Hpy166II GTNNAC 2 cut(s) 689, 982
Hpy188I TCNGA 3 cut(s) 154, 812, 1240
Hpy188III TCNNGA 2 cut(s) 144, 697
Hpy8I GTNNAC 2 cut(s) 689, 982
Hpy99I CGWCG 1 cut(s) 725
HpyAV CCTTC 1 cut(s) 1148
HpyCH4III ACNGT 3 cut(s) 937, 948, 1016
HpyCH4IV ACGT 1 cut(s) 737
HpyCH4V TGCA 9 cut(s) 35, 170, 202, 223, 432, 512, 568, 770, 932
HpyF10VI GCNNNNNNNGC 3 cut(s) 199, 223, 1290
HpyF3I CTNAG 3 cut(s) 450, 575, 1239
HpySE526I ACGT 1 cut(s) 737
Hsp92I GRCGYC 1 cut(s) 758
Hsp92II CATG 7 cut(s) 290, 356, 731, 774, 1237, 1283, 1292
Ksp22I TGATCA 1 cut(s) 916
Kzo9I GATC 8 cut(s) 259, 715, 749, 807, 856, 916, 1036, 1210
LmnI GCTCC 1 cut(s) 210
LpnPI CCDG 8 cut(s) 46, 221, 233, 277, 528, 1103, 1157, 1199
Lsp1109I GCAGC 3 cut(s) 214, 235, 1121
LweI GCATC 2 cut(s) 101, 577
MaeI CTAG 2 cut(s) 537, 1002
MaeII ACGT 1 cut(s) 737
MaeIII GTNAC 4 cut(s) 948, 1047, 1060, 1216
MalI GATC 8 cut(s) 261, 717, 751, 809, 858, 918, 1038, 1212
MboI GATC 8 cut(s) 259, 715, 749, 807, 856, 916, 1036, 1210
MboII GAAGA 5 cut(s) 188, 670, 744, 902, 1220
MhlI GDGCHC 2 cut(s) 219, 1081
MlsI TGGCCA 1 cut(s) 518
MluCI AATT 4 cut(s) 392, 596, 604, 1067
MluNI TGGCCA 1 cut(s) 518
MmeI TCCRAC 1 cut(s) 335
MnlI CCTC 8 cut(s) 274, 341, 768, 778, 877, 903, 919, 1006
Mox20I TGGCCA 1 cut(s) 518
MscI TGGCCA 1 cut(s) 518
MseI TTAA 6 cut(s) 129, 395, 654, 828, 1028, 1071
Msp20I TGGCCA 1 cut(s) 518
MspA1I CMGCKG 1 cut(s) 1112
MspCI CTTAAG 1 cut(s) 1027
MwoI GCNNNNNNNGC 3 cut(s) 199, 223, 1290
NcoI CCATGG 1 cut(s) 1288
NdeII GATC 8 cut(s) 259, 715, 749, 807, 856, 916, 1036, 1210
NlaIII CATG 7 cut(s) 290, 356, 731, 774, 1237, 1283, 1292
NlaIV GGNNCC 1 cut(s) 1285
NmuCI GTSAC 1 cut(s) 948
PaqCI CACCTGC 1 cut(s) 228
PceI AGGCCT 1 cut(s) 1158
PfeI GAWTC 1 cut(s) 297
PkrI GCNGC 3 cut(s) 204, 225, 1111
Psp1406I AACGTT 1 cut(s) 737
PspEI GGTNACC 1 cut(s) 1060
PspFI CCCAGC 1 cut(s) 263
PspN4I GGNNCC 1 cut(s) 1285
PspPI GGNCC 1 cut(s) 308
PstI CTGCAG 1 cut(s) 225
PvuII CAGCTG 1 cut(s) 1112
RsaI GTAC 3 cut(s) 285, 649, 690
RsaNI GTAC 3 cut(s) 284, 648, 689
SaqAI TTAA 6 cut(s) 129, 395, 654, 828, 1028, 1071
SatI GCNGC 3 cut(s) 203, 224, 1110
Sau3AI GATC 8 cut(s) 259, 715, 749, 807, 856, 916, 1036, 1210
Sau96I GGNCC 1 cut(s) 308
SduI GDGCHC 2 cut(s) 219, 1081
SfaNI GCATC 2 cut(s) 101, 577
SfcI CTRYAG 2 cut(s) 45, 221
SinI GGWCC 1 cut(s) 308
SmlI CTYRAG 1 cut(s) 1027
SmoI CTYRAG 1 cut(s) 1027
Sse9I AATT 4 cut(s) 392, 596, 604, 1067
SseBI AGGCCT 1 cut(s) 1158
SspI AATATT 1 cut(s) 1192
SspMI CTAG 2 cut(s) 537, 1002
StuI AGGCCT 1 cut(s) 1158
StyI CCWWGG 2 cut(s) 643, 1288
TaaI ACNGT 3 cut(s) 937, 948, 1016
TaiI ACGT 1 cut(s) 740
TaqI TCGA 2 cut(s) 143, 424
TasI AATT 4 cut(s) 392, 596, 604, 1067
TatI WGTACW 1 cut(s) 688
TfiI GAWTC 1 cut(s) 297
Tru1I TTAA 6 cut(s) 129, 395, 654, 828, 1028, 1071
Tru9I TTAA 6 cut(s) 129, 395, 654, 828, 1028, 1071
TscAI CASTG 3 cut(s) 215, 886, 1021
TseFI GTSAC 1 cut(s) 948
TseI GCWGC 3 cut(s) 202, 223, 1109
Tsp45I GTSAC 1 cut(s) 948
TspDTI ATGAA 5 cut(s) 17, 171, 609, 716, 903
TspGWI ACGGA 1 cut(s) 356
TspRI CASTG 3 cut(s) 215, 886, 1021
Vha464I CTTAAG 1 cut(s) 1027
VpaK11BI GGWCC 1 cut(s) 308
XapI RAATTY 2 cut(s) 596, 1067
XcmI CCANNNNNNNNNTGG 1 cut(s) 1210
XspI CTAG 2 cut(s) 537, 1002
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.