Rh5AG196000

protein desumoylation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0000268
Physical Location & Seq
Reverse (-)
22791141 .. 22792145
1005 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG196000.1

Sequence Viewer

Length: 765 bp
ATGGAGTACATTGAGTTTGGTACGTTAATACAGAGTAGAGCAATTACGGCAGCCAAGAAAGGAGGTAATGATTTGTTAGAATTTGCTGCCACGGCACCAAAGAGATTTGCCTCTATATTACAATATCGAAAAGGCCTTAAGAATGGAGAAAAGATATTTATCCCCATCCTGGATCCAGATACTACCTCAAAACACTGGTTCTTCATTGTGATTAAATTAGCGAGAACAGATGTAGATATATGGGACACTTACCCGAACCCTGCGCGCACTATGGCTCGAAATGATCTTGTTTATTATGTGCTTTTGGCATTGGACACAATATTTGACACTGAAATCCAAAGCTGTTTCAAGAAAGGATGGTCGTTATGTTCATTCACAGTTTTCAATGTAGATGGCATTCACATTCAACAAAACAACTTCGATTGTGGCATTTTCATGCTCAGATACATAATAAACTATGATAATCCATTAAAAGATGAGTTAGATTCCGTAAATTGTCGTGTGCAACTTGCCCTTTGGATGTTGAAGCACCCAAAGAACCAAGCATGGGTGAAAATTAATGAGGCTTTAGATAATGAAAACAAAAATGATGGTGCCAAGAACAAGATCAAGACAATAGAAGAAATTGACGAAGCTACTGGAAATAGTGTTGATCAACATCATGGCAAGAGCTGTTCACAAGTCGTGCAGAGAAAAACCTCAACACTACAAGCATGGGGTCGTGGTCGCCCTCGTGGTGCAAAGAATAAAAACTCTCGAAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C48

Protein Analysis

254

Amino Acids

29.06

Weight (kDa)

9.08

Isoelectric Point (pI)

27.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C48 PF02902 46 - 150 2.7e-11 Ulp1 protease family, C-terminal catalytic domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000268)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g23642 FvH4_2g09911 FvH4_2g09911 FvH4_2g09911 FvH4_3g18421 FvH4_4g05321 FvH4_6g28332 FvH4_7g31231
prunus_persica Prupe.2G063700_v2.0.a1 Prupe.5G238300_v2.0.a1 Prupe.6G153700_v2.0.a1 Prupe.7G017400_v2.0.a1 Prupe.7G070100_v2.0.a1 Prupe.7G070100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0345471 RchiOBHm_Chr1g0366901 RchiOBHm_Chr2g0162601 RchiOBHm_Chr6g0266661 RchiOBHm_Chr6g0266671
rosa_laevigata RLG00000005047 RLG00000007971 RLG00000008530 RLG00000009009 RLG00000009046 RLG00000014086 RLG00000017162 RLG00000017163 RLG00000017440 RLG00000019098 RLG00000022623 RLG00000024566 RLG00000027733 RLG00000029878 RLG00000029945 RLG00000030127 RLG00000030157 RLG00000031078 RLG00000031080 RLG00000034338 RLG00000034670
rosa_multiflora Rmu_sc0002106.1_g000007 Rmu_sc0002531.1_g000064 Rmu_sc0003433.1_g000005 Rmu_sc0004704.1_g000001 Rmu_sc0004704.1_g000002 Rmu_sc0004888.1_g000042 Rmu_sc0005599.1_g000031 Rmu_sc0006413.1_g000014 Rmu_sc0006413.1_g000018
rosa_roxburghii Rroxscaffold_1G00031940 Rroxscaffold_1G00032500 Rroxscaffold_1G00074770 Rroxscaffold_1G00074780 Rroxscaffold_1G00075150 Rroxscaffold_2G00125060 Rroxscaffold_2G00125070 Rroxscaffold_2G00125800 Rroxscaffold_2G00125820 Rroxscaffold_2G00139560 Rroxscaffold_2G00140550 Rroxscaffold_4G00314090 Rroxscaffold_6G00390050 Rroxscaffold_6G00390520 Rroxscaffold_6G00390530 Rroxscaffold_6G00428030 Rroxscaffold_7G00201570 Rroxscaffold_7G00201580 Rroxscaffold_7G00207070 Rroxscaffold_7G00207080 Rroxscaffold_7G00207240
rosa_rugosa Rorug01G0408000 Rorug01G0408100 Rorug01G0408100 Rorug01G0408200 Rorug02G0155200 Rorug02G0181500 Rorug02G0288400 Rorug03G0208600 Rorug03G0272300 Rorug06G0005500 Rorug06G0005600 Rorug06G0026300.1 Rorug06G0026400 Rorug06G0026500 Rorug06G0026600 Rorug06G0026600 Rorug06G0026600 Rorug06G0145800 Rorug07G0305200
rosa_samantha Rh1AG062100 Rh1BG131900 Rh1BG157000 Rh1CG021100 Rh1CG321600 Rh1DG188200 Rh2DG388300 Rh3AG320500 Rh3BG355400 Rh3CG352400 Rh3CG353200 Rh4AG045800 Rh4DG171700 Rh5AG196000 Rh5AG196100 Rh5CG346800 Rh6BG147600 Rh6BG147700 Rh6CG143200 Rh6CG143500 Rh6CG174600 Rh6CG391800 Rh6DG132100 Rh6DG132300 Rh6DG167100 Rh6DG167200 Rh7AG211600 Rh7BG307000 Rh7BG307300 Rh7BG398300
rosa_wichuraiana Rw0G001830 Rw0G001840 Rw0G018160 Rw0G018170 Rw3G028040 Rw5G017860 Rw5G026710 Rw6G012630 Rw6G012650 Rw6G012780 Rw6G012800 Rw7G019130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 94, 593
AccII CGCG 1 cut(s) 265
AclWI GGATC 2 cut(s) 167, 180
AcsI RAATTY 1 cut(s) 80
AfaI GTAC 2 cut(s) 8, 22
AfiI CCNNNNNNNGG 2 cut(s) 169, 547
AflII CTTAAG 1 cut(s) 137
AgsI TTSAA 4 cut(s) 349, 385, 407, 526
AjnI CCWGG 1 cut(s) 168
AluBI AGCT 3 cut(s) 342, 635, 672
AluI AGCT 3 cut(s) 342, 635, 672
AlwI GGATC 2 cut(s) 167, 180
AoxI GGCC 1 cut(s) 133
ApeKI GCWGC 2 cut(s) 50, 86
ApoI RAATTY 1 cut(s) 80
ArsI GACNNNNNNTTYG 2 cut(s) 305, 337
AseI ATTAAT 1 cut(s) 558
AspLEI GCGC 2 cut(s) 265, 267
AsuHPI GGTGA 1 cut(s) 562
BamHI GGATCC 1 cut(s) 172
BanI GGYRCC 2 cut(s) 94, 593
BauI CACGAG 1 cut(s) 732
BbvI GCAGC 2 cut(s) 62, 73
BccI CCATC 4 cut(s) 173, 351, 386, 584
BceAI ACGGC 2 cut(s) 63, 108
BciT130I CCWGG 1 cut(s) 170
BclI TGATCA 1 cut(s) 652
BfrI CTTAAG 1 cut(s) 137
BisI GCNGC 2 cut(s) 51, 87
BlsI GCNGC 2 cut(s) 52, 88
Bme1390I CCNGG 1 cut(s) 170
BmiI GGNNCC 3 cut(s) 96, 174, 595
BmrFI CCNGG 1 cut(s) 170
BsaBI GATNNNNATC 2 cut(s) 158, 657
BsaJI CCNNGG 1 cut(s) 90
Bsc4I CCNNNNNNNGG 2 cut(s) 169, 547
Bse1I ACTGG 2 cut(s) 200, 643
Bse8I GATNNNNATC 2 cut(s) 158, 657
BseBI CCWGG 1 cut(s) 170
BseDI CCNNGG 1 cut(s) 90
BseGI GGATG 3 cut(s) 165, 362, 525
BseJI GATNNNNATC 2 cut(s) 158, 657
BseLI CCNNNNNNNGG 2 cut(s) 169, 547
BseMII CTCAG 1 cut(s) 454
BseNI ACTGG 2 cut(s) 200, 643
BsePI GCGCGC 1 cut(s) 263
BseXI GCAGC 2 cut(s) 62, 73
BsgI GTGCAG 1 cut(s) 707
Bsh1236I CGCG 1 cut(s) 265
BshFI GGCC 1 cut(s) 135
BshNI GGYRCC 2 cut(s) 94, 593
BslFI GGGAC 1 cut(s) 257
BslI CCNNNNNNNGG 2 cut(s) 169, 547
BsmFI GGGAC 1 cut(s) 257
BsmI GAATGC 1 cut(s) 396
BsnI GGCC 1 cut(s) 135
Bsp143I GATC 4 cut(s) 172, 283, 606, 652
BspANI GGCC 1 cut(s) 135
BspCNI CTCAG 1 cut(s) 453
BspFNI CGCG 1 cut(s) 265
BspLI GGNNCC 3 cut(s) 96, 174, 595
BspPI GGATC 2 cut(s) 167, 180
BspT107I GGYRCC 2 cut(s) 94, 593
BspTI CTTAAG 1 cut(s) 137
BsrI ACTGG 2 cut(s) 200, 643
BssECI CCNNGG 1 cut(s) 90
BssHII GCGCGC 1 cut(s) 263
BssMI GATC 4 cut(s) 172, 283, 606, 652
BssSI CACGAG 1 cut(s) 732
Bst2BI CACGAG 1 cut(s) 732
Bst2UI CCWGG 1 cut(s) 170
Bst4CI ACNGT 1 cut(s) 379
BstAFI CTTAAG 1 cut(s) 137
BstC8I GCNNGC 1 cut(s) 265
BstDEI CTNAG 1 cut(s) 440
BstDSI CCRYGG 1 cut(s) 90
BstF5I GGATG 3 cut(s) 165, 362, 525
BstFNI CGCG 1 cut(s) 265
BstHHI GCGC 2 cut(s) 265, 267
BstKTI GATC 4 cut(s) 175, 286, 609, 655
BstMBI GATC 4 cut(s) 172, 283, 606, 652
BstMWI GCNNNNNNNGC 2 cut(s) 47, 92
BstNI CCWGG 1 cut(s) 170
BstSCI CCNGG 1 cut(s) 168
BstUI CGCG 1 cut(s) 265
BstV1I GCAGC 2 cut(s) 62, 73
BstX2I RGATCY 1 cut(s) 172
BstYI RGATCY 1 cut(s) 172
BsuRI GGCC 1 cut(s) 135
BtgI CCRYGG 1 cut(s) 90
BtsCI GGATG 3 cut(s) 165, 362, 525
BtsIMutI CAGTG 2 cut(s) 193, 327
Cac8I GCNNGC 1 cut(s) 265
CfoI GCGC 2 cut(s) 265, 267
Csp6I GTAC 2 cut(s) 7, 21
CviAII CATG 4 cut(s) 436, 546, 662, 714
CviJI RGCY 7 cut(s) 53, 135, 275, 342, 566, 635, 672
CviKI_1 RGCY 7 cut(s) 53, 135, 275, 342, 566, 635, 672
CviQI GTAC 2 cut(s) 7, 21
DdeI CTNAG 1 cut(s) 440
DpnI GATC 4 cut(s) 174, 285, 608, 654
DpnII GATC 4 cut(s) 172, 283, 606, 652
Eco147I AGGCCT 1 cut(s) 135
EcoRII CCWGG 1 cut(s) 168
FaeI CATG 4 cut(s) 439, 549, 665, 717
FaqI GGGAC 1 cut(s) 257
FatI CATG 4 cut(s) 435, 545, 661, 713
FbaI TGATCA 1 cut(s) 652
Fnu4HI GCNGC 2 cut(s) 51, 87
FokI GGATG 3 cut(s) 152, 369, 532
Fsp4HI GCNGC 2 cut(s) 51, 87
GlaI GCGC 2 cut(s) 264, 266
GluI GCNGC 2 cut(s) 51, 87
HaeIII GGCC 1 cut(s) 135
HhaI GCGC 2 cut(s) 265, 267
Hin1II CATG 4 cut(s) 439, 549, 665, 717
Hin6I GCGC 2 cut(s) 263, 265
HinP1I GCGC 2 cut(s) 263, 265
HinfI GANTC 1 cut(s) 485
HphI GGTGA 1 cut(s) 562
Hpy166II GTNNAC 1 cut(s) 677
Hpy188I TCNGA 1 cut(s) 443
Hpy188III TCNNGA 4 cut(s) 176, 349, 610, 756
Hpy8I GTNNAC 1 cut(s) 677
HpyCH4III ACNGT 1 cut(s) 379
HpyCH4IV ACGT 1 cut(s) 23
HpyCH4V TGCA 3 cut(s) 505, 688, 740
HpyF10VI GCNNNNNNNGC 2 cut(s) 47, 92
HpyF3I CTNAG 1 cut(s) 440
HpySE526I ACGT 1 cut(s) 23
Hsp92II CATG 4 cut(s) 439, 549, 665, 717
HspAI GCGC 2 cut(s) 263, 265
Ksp22I TGATCA 1 cut(s) 652
Kzo9I GATC 4 cut(s) 172, 283, 606, 652
LpnPI CCDG 6 cut(s) 155, 181, 182, 189, 273, 624
Lsp1109I GCAGC 2 cut(s) 62, 73
MaeII ACGT 1 cut(s) 23
MalI GATC 4 cut(s) 174, 285, 608, 654
MboI GATC 4 cut(s) 172, 283, 606, 652
MboII GAAGA 2 cut(s) 193, 632
MflI RGATCY 1 cut(s) 172
MluCI AATT 6 cut(s) 42, 80, 215, 493, 555, 624
MnlI CCTC 6 cut(s) 56, 121, 196, 556, 709, 741
MseI TTAA 5 cut(s) 26, 138, 213, 470, 558
MslI CAYNNNNRTG 1 cut(s) 434
MspCI CTTAAG 1 cut(s) 137
MspR9I CCNGG 1 cut(s) 170
Mva1269I GAATGC 1 cut(s) 396
MvaI CCWGG 1 cut(s) 170
MvnI CGCG 1 cut(s) 265
MwoI GCNNNNNNNGC 2 cut(s) 47, 92
NdeII GATC 4 cut(s) 172, 283, 606, 652
NlaIII CATG 4 cut(s) 439, 549, 665, 717
NlaIV GGNNCC 3 cut(s) 96, 174, 595
PauI GCGCGC 1 cut(s) 263
PceI AGGCCT 1 cut(s) 135
PctI GAATGC 1 cut(s) 396
PfeI GAWTC 1 cut(s) 485
PfoI TCCNGGA 1 cut(s) 168
PkrI GCNGC 2 cut(s) 52, 88
PshBI ATTAAT 1 cut(s) 558
Psp6I CCWGG 1 cut(s) 168
PspGI CCWGG 1 cut(s) 168
PspN4I GGNNCC 3 cut(s) 96, 174, 595
PsuI RGATCY 1 cut(s) 172
PteI GCGCGC 1 cut(s) 263
RsaI GTAC 2 cut(s) 8, 22
RsaNI GTAC 2 cut(s) 7, 21
RseI CAYNNNNRTG 1 cut(s) 434
SaqAI TTAA 5 cut(s) 26, 138, 213, 470, 558
SatI GCNGC 2 cut(s) 51, 87
Sau3AI GATC 4 cut(s) 172, 283, 606, 652
ScrFI CCNGG 1 cut(s) 170
SetI ASST 7 cut(s) 26, 67, 188, 344, 637, 674, 701
SmiMI CAYNNNNRTG 1 cut(s) 434
SmlI CTYRAG 1 cut(s) 137
SmoI CTYRAG 1 cut(s) 137
Sse9I AATT 6 cut(s) 42, 80, 215, 493, 555, 624
SseBI AGGCCT 1 cut(s) 135
SspI AATATT 1 cut(s) 321
StuI AGGCCT 1 cut(s) 135
StyD4I CCNGG 1 cut(s) 168
TaaI ACNGT 1 cut(s) 379
TaiI ACGT 1 cut(s) 26
TaqI TCGA 4 cut(s) 127, 277, 420, 757
TasI AATT 6 cut(s) 42, 80, 215, 493, 555, 624
TatI WGTACW 1 cut(s) 6
TfiI GAWTC 1 cut(s) 485
Tru1I TTAA 5 cut(s) 26, 138, 213, 470, 558
Tru9I TTAA 5 cut(s) 26, 138, 213, 470, 558
TscAI CASTG 2 cut(s) 200, 334
TseI GCWGC 2 cut(s) 50, 86
TspDTI ATGAA 4 cut(s) 193, 360, 424, 591
TspGWI ACGGA 1 cut(s) 478
TspRI CASTG 2 cut(s) 200, 334
Vha464I CTTAAG 1 cut(s) 137
VspI ATTAAT 1 cut(s) 558
XapI RAATTY 1 cut(s) 80
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.