Rroxscaffold_7G00207240

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000268
Physical Location & Seq
Reverse (-)
57128513 .. 57139093
10581 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00207240.1

Sequence Viewer

Length: 903 bp
ATGGAGTCACCGCCATCTCCGAGGGATTCCAACTTGTTTAGAAAGCGAGAGCGGCGCGACCGAACAAGAACGAGATGGCCCTTCCAAGAAAAGAAAGCCGCAACGCAGTTTGGAGAAGCTAAGCGAACATTAGAGGCTCTTGATCAAGGCCTGATTAAACCCTCACGATTAGTCAAATCTCCCGAGCAATACCAAAGGGAAATGGAGGCATTAGCCACTAAGCCATTGGTGGCTCCTCGCATTTTGCAAAAGCGAGCGCGCTCGGGGTCTTCTAAACCTAGTGTTTTCTATAGGGTCACGAAAGAAAGGATACCTCCTCTGTTACGTCCCCTATTGCTCGACGAAGGAACTCGTATGCGTGAACGCCTAAATAGTACTGTGGATTCTATTATCCTTCCATGGATCAAAGACGGCTTCGATTCACATTCGATCATGGTGTCTAATTTGATTCCTACATTTTCCCTCAAGTACAGAGAGTCACAAACACCTCTACAAGATTTGCAAAACCATCAAGAAAGTGATGATTTCAAAACTCAAAGTTCAAAAGAAGTTGAGGTTAATGACGAATCATCATGCCAAATACAAAGTGAGGACAACTCTAAGGCAGCACATCCTAAGATTAGGGAAGAATTTGTCATAGGAAAAACAATCAGGACAGACACTAAATCAACTAAATTCAGTCCGATCAATACGCGGCGCACCGCTGAAAGGAAGCCAAGTCAAGCAATATCAGATCCATTTGTGAAGCTTGGGTTCAAATTAGGTGATGAGCAAATGGACGAATATTTGCATGGGAGAACCCTAAATTTGAAGAGAATTGGTGAATTCAACGGTCCTTTCGATTTTGACGATGATGATTGTGATTTGCTGAGTTTTATATATGAAAAATATAAAAAGGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

300

Amino Acids

34.83

Weight (kDa)

9.24

Isoelectric Point (pI)

49.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000268)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g23642 FvH4_2g09911 FvH4_2g09911 FvH4_2g09911 FvH4_3g18421 FvH4_4g05321 FvH4_6g28332 FvH4_7g31231
prunus_persica Prupe.2G063700_v2.0.a1 Prupe.5G238300_v2.0.a1 Prupe.6G153700_v2.0.a1 Prupe.7G017400_v2.0.a1 Prupe.7G070100_v2.0.a1 Prupe.7G070100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0345471 RchiOBHm_Chr1g0366901 RchiOBHm_Chr2g0162601 RchiOBHm_Chr6g0266661 RchiOBHm_Chr6g0266671
rosa_laevigata RLG00000005047 RLG00000007971 RLG00000008530 RLG00000009009 RLG00000009046 RLG00000014086 RLG00000017162 RLG00000017163 RLG00000017440 RLG00000019098 RLG00000022623 RLG00000024566 RLG00000027733 RLG00000029878 RLG00000029945 RLG00000030127 RLG00000030157 RLG00000031078 RLG00000031080 RLG00000034338 RLG00000034670
rosa_multiflora Rmu_sc0002106.1_g000007 Rmu_sc0002531.1_g000064 Rmu_sc0003433.1_g000005 Rmu_sc0004704.1_g000001 Rmu_sc0004704.1_g000002 Rmu_sc0004888.1_g000042 Rmu_sc0005599.1_g000031 Rmu_sc0006413.1_g000014 Rmu_sc0006413.1_g000018
rosa_roxburghii Rroxscaffold_1G00031940 Rroxscaffold_1G00032500 Rroxscaffold_1G00074770 Rroxscaffold_1G00074780 Rroxscaffold_1G00075150 Rroxscaffold_2G00125060 Rroxscaffold_2G00125070 Rroxscaffold_2G00125800 Rroxscaffold_2G00125820 Rroxscaffold_2G00139560 Rroxscaffold_2G00140550 Rroxscaffold_4G00314090 Rroxscaffold_6G00390050 Rroxscaffold_6G00390520 Rroxscaffold_6G00390530 Rroxscaffold_6G00428030 Rroxscaffold_7G00201570 Rroxscaffold_7G00201580 Rroxscaffold_7G00207070 Rroxscaffold_7G00207080 Rroxscaffold_7G00207240
rosa_rugosa Rorug01G0408000 Rorug01G0408100 Rorug01G0408100 Rorug01G0408200 Rorug02G0155200 Rorug02G0181500 Rorug02G0288400 Rorug03G0208600 Rorug03G0272300 Rorug06G0005500 Rorug06G0005600 Rorug06G0026300.1 Rorug06G0026400 Rorug06G0026500 Rorug06G0026600 Rorug06G0026600 Rorug06G0026600 Rorug06G0145800 Rorug07G0305200
rosa_samantha Rh1AG062100 Rh1BG131900 Rh1BG157000 Rh1CG021100 Rh1CG321600 Rh1DG188200 Rh2DG388300 Rh3AG320500 Rh3BG355400 Rh3CG352400 Rh3CG353200 Rh4AG045800 Rh4DG171700 Rh5AG196000 Rh5AG196100 Rh5CG346800 Rh6BG147600 Rh6BG147700 Rh6CG143200 Rh6CG143500 Rh6CG174600 Rh6CG391800 Rh6DG132100 Rh6DG132300 Rh6DG167100 Rh6DG167200 Rh7AG211600 Rh7BG307000 Rh7BG307300 Rh7BG398300
rosa_wichuraiana Rw0G001830 Rw0G001840 Rw0G018160 Rw0G018170 Rw3G028040 Rw5G017860 Rw5G026710 Rw6G012630 Rw6G012650 Rw6G012780 Rw6G012800 Rw7G019130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 52
AccII CGCG 3 cut(s) 57, 259, 694
AciI CCGC 5 cut(s) 11, 52, 99, 694, 702
AclWI GGATC 2 cut(s) 410, 728
AcsI RAATTY 4 cut(s) 629, 674, 805, 824
AfaI GTAC 2 cut(s) 376, 470
AfiI CCNNNNNNNGG 1 cut(s) 708
AgsI TTSAA 5 cut(s) 529, 543, 757, 811, 829
AluBI AGCT 2 cut(s) 119, 748
AluI AGCT 2 cut(s) 119, 748
AlwI GGATC 2 cut(s) 410, 728
Ama87I CYCGRG 2 cut(s) 182, 262
AoxI GGCC 2 cut(s) 77, 148
ApeKI GCWGC 1 cut(s) 605
ApoI RAATTY 4 cut(s) 629, 674, 805, 824
AspLEI GCGC 4 cut(s) 57, 259, 261, 699
AspS9I GGNCC 2 cut(s) 78, 833
AsuHPI GGTGA 2 cut(s) 776, 833
AvaI CYCGRG 2 cut(s) 182, 262
AvaII GGWCC 1 cut(s) 833
BbsI GAAGAC 1 cut(s) 261
BbvI GCAGC 1 cut(s) 617
BccI CCATC 3 cut(s) 22, 69, 516
BceAI ACGGC 1 cut(s) 427
BciVI GTATCC 1 cut(s) 303
BclI TGATCA 1 cut(s) 142
BfaI CTAG 1 cut(s) 279
BfmI CTRYAG 1 cut(s) 289
BfuI GTATCC 1 cut(s) 303
BisI GCNGC 4 cut(s) 53, 99, 606, 695
BlpI GCTNAGC 1 cut(s) 120
BlsI GCNGC 4 cut(s) 54, 100, 607, 696
BmcAI AGTACT 1 cut(s) 376
Bme18I GGWCC 1 cut(s) 833
BmeT110I CYCGRG 2 cut(s) 182, 262
BmgT120I GGNCC 2 cut(s) 78, 833
BmiI GGNNCC 1 cut(s) 234
BpiI GAAGAC 1 cut(s) 261
BplI GAGNNNNNCTC 2 cut(s) 581, 613
Bpu1102I GCTNAGC 1 cut(s) 120
BpuEI CTTGAG 1 cut(s) 449
BsaJI CCNNGG 2 cut(s) 20, 398
Bsc4I CCNNNNNNNGG 1 cut(s) 708
BseDI CCNNGG 2 cut(s) 20, 398
BseGI GGATG 1 cut(s) 610
BseLI CCNNNNNNNGG 1 cut(s) 708
BseMII CTCAG 1 cut(s) 860
BsePI GCGCGC 1 cut(s) 257
BseRI GAGGAG 2 cut(s) 225, 306
BseXI GCAGC 1 cut(s) 617
Bsh1236I CGCG 3 cut(s) 57, 259, 694
Bsh1285I CGRYCG 1 cut(s) 61
BshFI GGCC 2 cut(s) 79, 150
BsiEI CGRYCG 1 cut(s) 61
BsiHKCI CYCGRG 2 cut(s) 182, 262
BslFI GGGAC 1 cut(s) 312
BslI CCNNNNNNNGG 1 cut(s) 708
BsmFI GGGAC 1 cut(s) 312
BsnI GGCC 2 cut(s) 79, 150
BsoBI CYCGRG 2 cut(s) 182, 262
Bsp143I GATC 5 cut(s) 142, 402, 429, 684, 733
Bsp1720I GCTNAGC 1 cut(s) 120
Bsp19I CCATGG 1 cut(s) 398
BspACI CCGC 5 cut(s) 11, 52, 99, 694, 702
BspANI GGCC 2 cut(s) 79, 150
BspCNI CTCAG 1 cut(s) 861
BspFNI CGCG 3 cut(s) 57, 259, 694
BspLI GGNNCC 1 cut(s) 234
BspPI GGATC 2 cut(s) 410, 728
BsrBI CCGCTC 1 cut(s) 52
BssECI CCNNGG 2 cut(s) 20, 398
BssHII GCGCGC 1 cut(s) 257
BssMI GATC 5 cut(s) 142, 402, 429, 684, 733
BssT1I CCWWGG 1 cut(s) 398
Bst4CI ACNGT 2 cut(s) 379, 833
Bst6I CTCTTC 1 cut(s) 806
BstC8I GCNNGC 2 cut(s) 255, 259
BstDEI CTNAG 5 cut(s) 120, 219, 600, 615, 869
BstDSI CCRYGG 1 cut(s) 398
BstF5I GGATG 1 cut(s) 610
BstFNI CGCG 3 cut(s) 57, 259, 694
BstHHI GCGC 4 cut(s) 57, 259, 261, 699
BstKTI GATC 5 cut(s) 145, 405, 432, 687, 736
BstMBI GATC 5 cut(s) 142, 402, 429, 684, 733
BstMCI CGRYCG 1 cut(s) 61
BstMWI GCNNNNNNNGC 1 cut(s) 52
BstSFI CTRYAG 1 cut(s) 289
BstUI CGCG 3 cut(s) 57, 259, 694
BstV1I GCAGC 1 cut(s) 617
BstV2I GAAGAC 1 cut(s) 261
BstX2I RGATCY 1 cut(s) 733
BstYI RGATCY 1 cut(s) 733
BsuI GTATCC 1 cut(s) 303
BsuRI GGCC 2 cut(s) 79, 150
BtgI CCRYGG 1 cut(s) 398
BtsCI GGATG 1 cut(s) 610
Cac8I GCNNGC 2 cut(s) 255, 259
CfoI GCGC 4 cut(s) 57, 259, 261, 699
Cfr13I GGNCC 2 cut(s) 78, 833
Csp6I GTAC 2 cut(s) 375, 469
CviAII CATG 4 cut(s) 399, 433, 573, 791
CviQI GTAC 2 cut(s) 375, 469
DdeI CTNAG 5 cut(s) 120, 219, 600, 615, 869
DpnI GATC 5 cut(s) 144, 404, 431, 686, 735
DpnII GATC 5 cut(s) 142, 402, 429, 684, 733
Eam1104I CTCTTC 1 cut(s) 806
EarI CTCTTC 1 cut(s) 806
Eco130I CCWWGG 1 cut(s) 398
Eco147I AGGCCT 1 cut(s) 150
Eco47I GGWCC 1 cut(s) 833
Eco88I CYCGRG 2 cut(s) 182, 262
EcoRI GAATTC 1 cut(s) 824
EcoT14I CCWWGG 1 cut(s) 398
ErhI CCWWGG 1 cut(s) 398
FaeI CATG 4 cut(s) 402, 436, 576, 794
FaqI GGGAC 1 cut(s) 312
FatI CATG 4 cut(s) 398, 432, 572, 790
FbaI TGATCA 1 cut(s) 142
Fnu4HI GCNGC 4 cut(s) 53, 99, 606, 695
FokI GGATG 1 cut(s) 597
Fsp4HI GCNGC 4 cut(s) 53, 99, 606, 695
FspBI CTAG 1 cut(s) 279
GlaI GCGC 4 cut(s) 56, 258, 260, 698
GluI GCNGC 4 cut(s) 53, 99, 606, 695
HaeIII GGCC 2 cut(s) 79, 150
HhaI GCGC 4 cut(s) 57, 259, 261, 699
Hin1II CATG 4 cut(s) 402, 436, 576, 794
Hin6I GCGC 4 cut(s) 55, 257, 259, 697
HinP1I GCGC 4 cut(s) 55, 257, 259, 697
HindIII AAGCTT 1 cut(s) 746
HinfI GANTC 7 cut(s) 5, 26, 383, 419, 448, 476, 566
HphI GGTGA 2 cut(s) 776, 833
Hpy166II GTNNAC 1 cut(s) 362
Hpy188I TCNGA 3 cut(s) 21, 684, 733
Hpy188III TCNNGA 6 cut(s) 140, 165, 182, 298, 512, 652
Hpy8I GTNNAC 1 cut(s) 362
Hpy99I CGWCG 1 cut(s) 344
HpyAV CCTTC 3 cut(s) 91, 338, 404
HpyCH4III ACNGT 2 cut(s) 379, 833
HpyCH4IV ACGT 1 cut(s) 325
HpyCH4V TGCA 3 cut(s) 247, 502, 790
HpyF10VI GCNNNNNNNGC 1 cut(s) 52
HpyF3I CTNAG 5 cut(s) 120, 219, 600, 615, 869
HpySE526I ACGT 1 cut(s) 325
Hsp92II CATG 4 cut(s) 402, 436, 576, 794
HspAI GCGC 4 cut(s) 55, 257, 259, 697
Ksp22I TGATCA 1 cut(s) 142
Kzo9I GATC 5 cut(s) 142, 402, 429, 684, 733
LmnI GCTCC 1 cut(s) 238
LpnPI CCDG 2 cut(s) 164, 637
Lsp1109I GCAGC 1 cut(s) 617
MaeI CTAG 1 cut(s) 279
MaeII ACGT 1 cut(s) 325
MaeIII GTNAC 4 cut(s) 6, 295, 321, 477
MalI GATC 5 cut(s) 144, 404, 431, 686, 735
MbiI CCGCTC 1 cut(s) 52
MboI GATC 5 cut(s) 142, 402, 429, 684, 733
MboII GAAGA 3 cut(s) 261, 638, 823
MflI RGATCY 1 cut(s) 733
MluCI AATT 7 cut(s) 442, 629, 674, 758, 805, 816, 824
MlyI GAGTC 2 cut(s) 14, 485
MmeI TCCRAC 1 cut(s) 54
MseI TTAA 2 cut(s) 156, 558
MspA1I CMGCKG 1 cut(s) 704
MvnI CGCG 3 cut(s) 57, 259, 694
MwoI GCNNNNNNNGC 1 cut(s) 52
NcoI CCATGG 1 cut(s) 398
NdeII GATC 5 cut(s) 142, 402, 429, 684, 733
NlaIII CATG 4 cut(s) 402, 436, 576, 794
NlaIV GGNNCC 1 cut(s) 234
NmuCI GTSAC 3 cut(s) 6, 295, 477
PauI GCGCGC 1 cut(s) 257
PceI AGGCCT 1 cut(s) 150
PcsI WCGNNNNNNNCGW 2 cut(s) 837, 846
PfeI GAWTC 5 cut(s) 26, 383, 419, 448, 566
PkrI GCNGC 4 cut(s) 54, 100, 607, 696
PleI GAGTC 2 cut(s) 13, 484
PpsI GAGTC 2 cut(s) 13, 484
PspN4I GGNNCC 1 cut(s) 234
PspPI GGNCC 2 cut(s) 78, 833
PsuI RGATCY 1 cut(s) 733
PteI GCGCGC 1 cut(s) 257
RsaI GTAC 2 cut(s) 376, 470
RsaNI GTAC 2 cut(s) 375, 469
SaqAI TTAA 2 cut(s) 156, 558
SatI GCNGC 4 cut(s) 53, 99, 606, 695
Sau3AI GATC 5 cut(s) 142, 402, 429, 684, 733
Sau96I GGNCC 2 cut(s) 78, 833
ScaI AGTACT 1 cut(s) 376
SchI GAGTC 2 cut(s) 14, 485
SetI ASST 8 cut(s) 121, 280, 316, 328, 490, 558, 750, 766
SfcI CTRYAG 1 cut(s) 289
SinI GGWCC 1 cut(s) 833
SmlI CTYRAG 1 cut(s) 464
SmoI CTYRAG 1 cut(s) 464
Sse9I AATT 7 cut(s) 442, 629, 674, 758, 805, 816, 824
SseBI AGGCCT 1 cut(s) 150
SsiI CCGC 5 cut(s) 11, 52, 99, 694, 702
SspI AATATT 1 cut(s) 785
SspMI CTAG 1 cut(s) 279
StuI AGGCCT 1 cut(s) 150
StyI CCWWGG 1 cut(s) 398
TaaI ACNGT 2 cut(s) 379, 833
TaiI ACGT 1 cut(s) 328
TaqI TCGA 4 cut(s) 339, 417, 428, 840
TaqII GACCGA 1 cut(s) 75
TasI AATT 7 cut(s) 442, 629, 674, 758, 805, 816, 824
TatI WGTACW 2 cut(s) 374, 468
TauI GCSGC 3 cut(s) 55, 101, 697
TfiI GAWTC 5 cut(s) 26, 383, 419, 448, 566
Tru1I TTAA 2 cut(s) 156, 558
Tru9I TTAA 2 cut(s) 156, 558
TseFI GTSAC 3 cut(s) 6, 295, 477
TseI GCWGC 1 cut(s) 605
Tsp45I GTSAC 3 cut(s) 6, 295, 477
TspDTI ATGAA 1 cut(s) 897
VpaK11BI GGWCC 1 cut(s) 833
XapI RAATTY 4 cut(s) 629, 674, 805, 824
XcmI CCANNNNNNNNNTGG 1 cut(s) 223
XspI CTAG 1 cut(s) 279
ZrmI AGTACT 1 cut(s) 376
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.