Rh6DG167200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0000268
Physical Location & Seq
Forward (+)
25813510 .. 25828328
14819 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG167200.1

Sequence Viewer

Length: 429 bp
ATGCGTGTGGAGGAAAAGATTGATGAATTGGGAGGTCTTCTTAGAGGGATACAAGAACGATTGTTCAAAGTAGTGAGACAAGATGGTGATCAGGATGTCAATATAAAAAGGGATGAGGCTAATCATGAAAGAAAGAGTGTGGATCTGTCAGCAAATGATATTATTAGGCAAAACCATCAAGAAAGTGATGATTTCAAAACTCAAAGTTCAAAAGAAGTTGAGGTTAATGACGAATCATCATGTCAAATACAAAGTGAGGACAACTCTGAGGCAGCACATCCTAAGCTAAACCAAATGCTAGAATTTAACCTCACGTTCACATATCAAAGCTCTCAGGTCCTAAATGCCGAAAACCCACCAAATTTCTTACCAGTGGAAGAGATCGAAAAGTTGAAGGAGAAGAGGATTCTTATTGGTGCGACTATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

142

Amino Acids

16.32

Weight (kDa)

4.73

Isoelectric Point (pI)

53.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000268)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g23642 FvH4_2g09911 FvH4_2g09911 FvH4_2g09911 FvH4_3g18421 FvH4_4g05321 FvH4_6g28332 FvH4_7g31231
prunus_persica Prupe.2G063700_v2.0.a1 Prupe.5G238300_v2.0.a1 Prupe.6G153700_v2.0.a1 Prupe.7G017400_v2.0.a1 Prupe.7G070100_v2.0.a1 Prupe.7G070100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0345471 RchiOBHm_Chr1g0366901 RchiOBHm_Chr2g0162601 RchiOBHm_Chr6g0266661 RchiOBHm_Chr6g0266671
rosa_laevigata RLG00000005047 RLG00000007971 RLG00000008530 RLG00000009009 RLG00000009046 RLG00000014086 RLG00000017162 RLG00000017163 RLG00000017440 RLG00000019098 RLG00000022623 RLG00000024566 RLG00000027733 RLG00000029878 RLG00000029945 RLG00000030127 RLG00000030157 RLG00000031078 RLG00000031080 RLG00000034338 RLG00000034670
rosa_multiflora Rmu_sc0002106.1_g000007 Rmu_sc0002531.1_g000064 Rmu_sc0003433.1_g000005 Rmu_sc0004704.1_g000001 Rmu_sc0004704.1_g000002 Rmu_sc0004888.1_g000042 Rmu_sc0005599.1_g000031 Rmu_sc0006413.1_g000014 Rmu_sc0006413.1_g000018
rosa_roxburghii Rroxscaffold_1G00031940 Rroxscaffold_1G00032500 Rroxscaffold_1G00074770 Rroxscaffold_1G00074780 Rroxscaffold_1G00075150 Rroxscaffold_2G00125060 Rroxscaffold_2G00125070 Rroxscaffold_2G00125800 Rroxscaffold_2G00125820 Rroxscaffold_2G00139560 Rroxscaffold_2G00140550 Rroxscaffold_4G00314090 Rroxscaffold_6G00390050 Rroxscaffold_6G00390520 Rroxscaffold_6G00390530 Rroxscaffold_6G00428030 Rroxscaffold_7G00201570 Rroxscaffold_7G00201580 Rroxscaffold_7G00207070 Rroxscaffold_7G00207080 Rroxscaffold_7G00207240
rosa_rugosa Rorug01G0408000 Rorug01G0408100 Rorug01G0408100 Rorug01G0408200 Rorug02G0155200 Rorug02G0181500 Rorug02G0288400 Rorug03G0208600 Rorug03G0272300 Rorug06G0005500 Rorug06G0005600 Rorug06G0026300.1 Rorug06G0026400 Rorug06G0026500 Rorug06G0026600 Rorug06G0026600 Rorug06G0026600 Rorug06G0145800 Rorug07G0305200
rosa_samantha Rh1AG062100 Rh1BG131900 Rh1BG157000 Rh1CG021100 Rh1CG321600 Rh1DG188200 Rh2DG388300 Rh3AG320500 Rh3BG355400 Rh3CG352400 Rh3CG353200 Rh4AG045800 Rh4DG171700 Rh5AG196000 Rh5AG196100 Rh5CG346800 Rh6BG147600 Rh6BG147700 Rh6CG143200 Rh6CG143500 Rh6CG174600 Rh6CG391800 Rh6DG132100 Rh6DG132300 Rh6DG167100 Rh6DG167200 Rh7AG211600 Rh7BG307000 Rh7BG307300 Rh7BG398300
rosa_wichuraiana Rw0G001830 Rw0G001840 Rw0G018160 Rw0G018170 Rw3G028040 Rw5G017860 Rw5G026710 Rw6G012630 Rw6G012650 Rw6G012780 Rw6G012800 Rw7G019130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 150
AcsI RAATTY 2 cut(s) 302, 361
AgsI TTSAA 4 cut(s) 67, 196, 210, 394
AluBI AGCT 2 cut(s) 286, 330
AluI AGCT 2 cut(s) 286, 330
Alw26I GTCTC 1 cut(s) 70
AlwI GGATC 1 cut(s) 150
ApeKI GCWGC 1 cut(s) 272
ApoI RAATTY 2 cut(s) 302, 361
AspS9I GGNCC 1 cut(s) 337
AsuHPI GGTGA 1 cut(s) 98
AvaII GGWCC 1 cut(s) 337
BbsI GAAGAC 1 cut(s) 29
BbvI GCAGC 1 cut(s) 284
BccI CCATC 2 cut(s) 77, 183
BciVI GTATCC 1 cut(s) 42
BclI TGATCA 1 cut(s) 88
BcoDI GTCTC 1 cut(s) 70
BfaI CTAG 1 cut(s) 299
BfuI GTATCC 1 cut(s) 42
BisI GCNGC 1 cut(s) 273
BlsI GCNGC 1 cut(s) 274
Bme18I GGWCC 1 cut(s) 337
BmgT120I GGNCC 1 cut(s) 337
BpiI GAAGAC 1 cut(s) 29
BplI GAGNNNNNCTC 2 cut(s) 248, 280
Bpu10I CCTNAGC 1 cut(s) 282
BsaBI GATNNNNATC 1 cut(s) 87
Bse1I ACTGG 1 cut(s) 371
Bse8I GATNNNNATC 1 cut(s) 87
BseGI GGATG 3 cut(s) 100, 118, 277
BseJI GATNNNNATC 1 cut(s) 87
BseMII CTCAG 2 cut(s) 258, 347
BseNI ACTGG 1 cut(s) 371
BseXI GCAGC 1 cut(s) 284
BsmAI GTCTC 1 cut(s) 70
Bsp143I GATC 3 cut(s) 88, 142, 381
BspCNI CTCAG 2 cut(s) 259, 346
BspHI TCATGA 1 cut(s) 124
BspPI GGATC 1 cut(s) 150
BsrI ACTGG 1 cut(s) 371
BssMI GATC 3 cut(s) 88, 142, 381
Bst6I CTCTTC 2 cut(s) 372, 395
BstDEI CTNAG 4 cut(s) 41, 267, 282, 333
BstF5I GGATG 3 cut(s) 100, 118, 277
BstKTI GATC 3 cut(s) 91, 145, 384
BstMAI GTCTC 1 cut(s) 70
BstMBI GATC 3 cut(s) 88, 142, 381
BstV1I GCAGC 1 cut(s) 284
BstV2I GAAGAC 1 cut(s) 29
BstX2I RGATCY 1 cut(s) 142
BstYI RGATCY 1 cut(s) 142
BsuI GTATCC 1 cut(s) 42
BtsCI GGATG 3 cut(s) 100, 118, 277
BtsIMutI CAGTG 1 cut(s) 378
CciI TCATGA 1 cut(s) 124
Cfr13I GGNCC 1 cut(s) 337
CviAII CATG 2 cut(s) 125, 240
CviJI RGCY 3 cut(s) 119, 286, 330
CviKI_1 RGCY 3 cut(s) 119, 286, 330
DdeI CTNAG 4 cut(s) 41, 267, 282, 333
DpnI GATC 3 cut(s) 90, 144, 383
DpnII GATC 3 cut(s) 88, 142, 381
Eam1104I CTCTTC 2 cut(s) 372, 395
EarI CTCTTC 2 cut(s) 372, 395
Eco47I GGWCC 1 cut(s) 337
EcoO109I RGGNCCY 1 cut(s) 337
FaeI CATG 2 cut(s) 128, 243
FaiI YATR 4 cut(s) 104, 126, 241, 322
FatI CATG 2 cut(s) 124, 239
FbaI TGATCA 1 cut(s) 88
Fnu4HI GCNGC 1 cut(s) 273
FokI GGATG 3 cut(s) 107, 125, 264
Fsp4HI GCNGC 1 cut(s) 273
FspBI CTAG 1 cut(s) 299
GluI GCNGC 1 cut(s) 273
Hin1II CATG 2 cut(s) 128, 243
HinfI GANTC 2 cut(s) 233, 406
HphI GGTGA 1 cut(s) 98
Hpy166II GTNNAC 1 cut(s) 318
Hpy188I TCNGA 1 cut(s) 268
Hpy188III TCNNGA 3 cut(s) 92, 125, 179
Hpy8I GTNNAC 1 cut(s) 318
HpyAV CCTTC 1 cut(s) 388
HpyCH4IV ACGT 1 cut(s) 314
HpyF3I CTNAG 4 cut(s) 41, 267, 282, 333
HpySE526I ACGT 1 cut(s) 314
Hsp92II CATG 2 cut(s) 128, 243
Ksp22I TGATCA 1 cut(s) 88
Kzo9I GATC 3 cut(s) 88, 142, 381
LpnPI CCDG 3 cut(s) 77, 320, 384
Lsp1109I GCAGC 1 cut(s) 284
MaeI CTAG 1 cut(s) 299
MaeII ACGT 1 cut(s) 314
MalI GATC 3 cut(s) 90, 144, 383
MboI GATC 3 cut(s) 88, 142, 381
MboII GAAGA 3 cut(s) 29, 389, 412
MflI RGATCY 1 cut(s) 142
MluCI AATT 3 cut(s) 26, 302, 361
MnlI CCTC 9 cut(s) 4, 26, 38, 109, 214, 250, 262, 320, 396
MseI TTAA 2 cut(s) 225, 306
NdeII GATC 3 cut(s) 88, 142, 381
NlaIII CATG 2 cut(s) 128, 243
PagI TCATGA 1 cut(s) 124
PfeI GAWTC 2 cut(s) 233, 406
PkrI GCNGC 1 cut(s) 274
PpuMI RGGWCCY 1 cut(s) 337
Psp5II RGGWCCY 1 cut(s) 337
PspPI GGNCC 1 cut(s) 337
PspPPI RGGWCCY 1 cut(s) 337
PsuI RGATCY 1 cut(s) 142
SaqAI TTAA 2 cut(s) 225, 306
SatI GCNGC 1 cut(s) 273
Sau3AI GATC 3 cut(s) 88, 142, 381
Sau96I GGNCC 1 cut(s) 337
SetI ASST 7 cut(s) 37, 225, 288, 312, 317, 332, 339
SinI GGWCC 1 cut(s) 337
Sse9I AATT 3 cut(s) 26, 302, 361
SspMI CTAG 1 cut(s) 299
TaiI ACGT 1 cut(s) 317
TaqI TCGA 1 cut(s) 384
TasI AATT 3 cut(s) 26, 302, 361
TfiI GAWTC 2 cut(s) 233, 406
Tru1I TTAA 2 cut(s) 225, 306
Tru9I TTAA 2 cut(s) 225, 306
TscAI CASTG 1 cut(s) 378
TseI GCWGC 1 cut(s) 272
TspDTI ATGAA 2 cut(s) 39, 141
TspRI CASTG 1 cut(s) 378
VpaK11BI GGWCC 1 cut(s) 337
XapI RAATTY 2 cut(s) 302, 361
XspI CTAG 1 cut(s) 299
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.