Rroxscaffold_7G00207080

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000268
Physical Location & Seq
Reverse (-)
56965064 .. 56969503
4440 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00207080.1

Sequence Viewer

Length: 471 bp
ATGGTGTCTAATTTGATTCCTACATTTTCCCTCAAGTACAGAGAGTCACAAACACCTCTACAAGATTTGCAAAACCATCAAGAAAGTGATGATTTCAAAACTCAAAGTTCAAAAGAAGTTGAGGTTAATGACGAATCATCATGCCAAATACAAAGTGAGGACAACTCTAAGGCAGCACATCCTAAGATTAGGGAAGAATTTGTCATAGGAAAAACAATCAGGACAGACACTAAATCAACTAAATTCAGTCCGATCAATACGCGGCGCACCGCTGAAAGGAAGCCAAGTCAAGCAATATCAGATCCATTTGTGAAGCTTGGGTTCAAATTAGGTGATGAGCAAATGGACGAATATTTGCATGGGAGAACCCTAAATTTGAAGAGAATTGGTGAATTCAACGGTCCTTTCGATTTTGACGATGATGATTGTGATTTGCTGAGTTTTATATATGAAAAATATAAAAAGGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

156

Amino Acids

18.06

Weight (kDa)

5.19

Isoelectric Point (pI)

40.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000268)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g23642 FvH4_2g09911 FvH4_2g09911 FvH4_2g09911 FvH4_3g18421 FvH4_4g05321 FvH4_6g28332 FvH4_7g31231
prunus_persica Prupe.2G063700_v2.0.a1 Prupe.5G238300_v2.0.a1 Prupe.6G153700_v2.0.a1 Prupe.7G017400_v2.0.a1 Prupe.7G070100_v2.0.a1 Prupe.7G070100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0345471 RchiOBHm_Chr1g0366901 RchiOBHm_Chr2g0162601 RchiOBHm_Chr6g0266661 RchiOBHm_Chr6g0266671
rosa_laevigata RLG00000005047 RLG00000007971 RLG00000008530 RLG00000009009 RLG00000009046 RLG00000014086 RLG00000017162 RLG00000017163 RLG00000017440 RLG00000019098 RLG00000022623 RLG00000024566 RLG00000027733 RLG00000029878 RLG00000029945 RLG00000030127 RLG00000030157 RLG00000031078 RLG00000031080 RLG00000034338 RLG00000034670
rosa_multiflora Rmu_sc0002106.1_g000007 Rmu_sc0002531.1_g000064 Rmu_sc0003433.1_g000005 Rmu_sc0004704.1_g000001 Rmu_sc0004704.1_g000002 Rmu_sc0004888.1_g000042 Rmu_sc0005599.1_g000031 Rmu_sc0006413.1_g000014 Rmu_sc0006413.1_g000018
rosa_roxburghii Rroxscaffold_1G00031940 Rroxscaffold_1G00032500 Rroxscaffold_1G00074770 Rroxscaffold_1G00074780 Rroxscaffold_1G00075150 Rroxscaffold_2G00125060 Rroxscaffold_2G00125070 Rroxscaffold_2G00125800 Rroxscaffold_2G00125820 Rroxscaffold_2G00139560 Rroxscaffold_2G00140550 Rroxscaffold_4G00314090 Rroxscaffold_6G00390050 Rroxscaffold_6G00390520 Rroxscaffold_6G00390530 Rroxscaffold_6G00428030 Rroxscaffold_7G00201570 Rroxscaffold_7G00201580 Rroxscaffold_7G00207070 Rroxscaffold_7G00207080 Rroxscaffold_7G00207240
rosa_rugosa Rorug01G0408000 Rorug01G0408100 Rorug01G0408100 Rorug01G0408200 Rorug02G0155200 Rorug02G0181500 Rorug02G0288400 Rorug03G0208600 Rorug03G0272300 Rorug06G0005500 Rorug06G0005600 Rorug06G0026300.1 Rorug06G0026400 Rorug06G0026500 Rorug06G0026600 Rorug06G0026600 Rorug06G0026600 Rorug06G0145800 Rorug07G0305200
rosa_samantha Rh1AG062100 Rh1BG131900 Rh1BG157000 Rh1CG021100 Rh1CG321600 Rh1DG188200 Rh2DG388300 Rh3AG320500 Rh3BG355400 Rh3CG352400 Rh3CG353200 Rh4AG045800 Rh4DG171700 Rh5AG196000 Rh5AG196100 Rh5CG346800 Rh6BG147600 Rh6BG147700 Rh6CG143200 Rh6CG143500 Rh6CG174600 Rh6CG391800 Rh6DG132100 Rh6DG132300 Rh6DG167100 Rh6DG167200 Rh7AG211600 Rh7BG307000 Rh7BG307300 Rh7BG398300
rosa_wichuraiana Rw0G001830 Rw0G001840 Rw0G018160 Rw0G018170 Rw3G028040 Rw5G017860 Rw5G026710 Rw6G012630 Rw6G012650 Rw6G012780 Rw6G012800 Rw7G019130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 262
AciI CCGC 2 cut(s) 262, 270
AclWI GGATC 1 cut(s) 296
AcsI RAATTY 4 cut(s) 197, 242, 373, 392
AfaI GTAC 1 cut(s) 38
AfiI CCNNNNNNNGG 1 cut(s) 276
AgsI TTSAA 5 cut(s) 97, 111, 325, 379, 397
AluBI AGCT 1 cut(s) 316
AluI AGCT 1 cut(s) 316
AlwI GGATC 1 cut(s) 296
ApeKI GCWGC 1 cut(s) 173
ApoI RAATTY 4 cut(s) 197, 242, 373, 392
AspLEI GCGC 1 cut(s) 267
AspS9I GGNCC 1 cut(s) 401
AsuHPI GGTGA 2 cut(s) 344, 401
AvaII GGWCC 1 cut(s) 401
BbvI GCAGC 1 cut(s) 185
BccI CCATC 1 cut(s) 84
BisI GCNGC 2 cut(s) 174, 263
BlsI GCNGC 2 cut(s) 175, 264
Bme18I GGWCC 1 cut(s) 401
BmgT120I GGNCC 1 cut(s) 401
BplI GAGNNNNNCTC 2 cut(s) 149, 181
BpuEI CTTGAG 1 cut(s) 17
Bsc4I CCNNNNNNNGG 1 cut(s) 276
BseGI GGATG 1 cut(s) 178
BseLI CCNNNNNNNGG 1 cut(s) 276
BseMII CTCAG 1 cut(s) 428
BseXI GCAGC 1 cut(s) 185
Bsh1236I CGCG 1 cut(s) 262
BslI CCNNNNNNNGG 1 cut(s) 276
Bsp143I GATC 2 cut(s) 252, 301
BspACI CCGC 2 cut(s) 262, 270
BspCNI CTCAG 1 cut(s) 429
BspFNI CGCG 1 cut(s) 262
BspPI GGATC 1 cut(s) 296
BssMI GATC 2 cut(s) 252, 301
Bst4CI ACNGT 1 cut(s) 401
Bst6I CTCTTC 1 cut(s) 374
BstDEI CTNAG 3 cut(s) 168, 183, 437
BstF5I GGATG 1 cut(s) 178
BstFNI CGCG 1 cut(s) 262
BstHHI GCGC 1 cut(s) 267
BstKTI GATC 2 cut(s) 255, 304
BstMBI GATC 2 cut(s) 252, 301
BstUI CGCG 1 cut(s) 262
BstV1I GCAGC 1 cut(s) 185
BstX2I RGATCY 1 cut(s) 301
BstYI RGATCY 1 cut(s) 301
BtsCI GGATG 1 cut(s) 178
CfoI GCGC 1 cut(s) 267
Cfr13I GGNCC 1 cut(s) 401
Csp6I GTAC 1 cut(s) 37
CviAII CATG 2 cut(s) 141, 359
CviJI RGCY 2 cut(s) 283, 316
CviKI_1 RGCY 2 cut(s) 283, 316
CviQI GTAC 1 cut(s) 37
DdeI CTNAG 3 cut(s) 168, 183, 437
DpnI GATC 2 cut(s) 254, 303
DpnII GATC 2 cut(s) 252, 301
Eam1104I CTCTTC 1 cut(s) 374
EarI CTCTTC 1 cut(s) 374
Eco47I GGWCC 1 cut(s) 401
EcoRI GAATTC 1 cut(s) 392
FaeI CATG 2 cut(s) 144, 362
FaiI YATR 7 cut(s) 142, 206, 360, 446, 448, 450, 459
FatI CATG 2 cut(s) 140, 358
Fnu4HI GCNGC 2 cut(s) 174, 263
FokI GGATG 1 cut(s) 165
Fsp4HI GCNGC 2 cut(s) 174, 263
GlaI GCGC 1 cut(s) 266
GluI GCNGC 2 cut(s) 174, 263
HhaI GCGC 1 cut(s) 267
Hin1II CATG 2 cut(s) 144, 362
Hin6I GCGC 1 cut(s) 265
HinP1I GCGC 1 cut(s) 265
HindIII AAGCTT 1 cut(s) 314
HinfI GANTC 3 cut(s) 16, 44, 134
HphI GGTGA 2 cut(s) 344, 401
Hpy188I TCNGA 2 cut(s) 252, 301
Hpy188III TCNNGA 2 cut(s) 80, 220
HpyCH4III ACNGT 1 cut(s) 401
HpyCH4V TGCA 2 cut(s) 70, 358
HpyF3I CTNAG 3 cut(s) 168, 183, 437
Hsp92II CATG 2 cut(s) 144, 362
HspAI GCGC 1 cut(s) 265
Kzo9I GATC 2 cut(s) 252, 301
LpnPI CCDG 1 cut(s) 205
Lsp1109I GCAGC 1 cut(s) 185
MaeIII GTNAC 1 cut(s) 45
MalI GATC 2 cut(s) 254, 303
MboI GATC 2 cut(s) 252, 301
MboII GAAGA 2 cut(s) 206, 391
MflI RGATCY 1 cut(s) 301
MluCI AATT 7 cut(s) 10, 197, 242, 326, 373, 384, 392
MlyI GAGTC 1 cut(s) 53
MnlI CCTC 4 cut(s) 41, 66, 115, 151
MseI TTAA 1 cut(s) 126
MspA1I CMGCKG 1 cut(s) 272
MvnI CGCG 1 cut(s) 262
NdeII GATC 2 cut(s) 252, 301
NlaIII CATG 2 cut(s) 144, 362
NmuCI GTSAC 1 cut(s) 45
PcsI WCGNNNNNNNCGW 2 cut(s) 405, 414
PfeI GAWTC 2 cut(s) 16, 134
PkrI GCNGC 2 cut(s) 175, 264
PleI GAGTC 1 cut(s) 52
PpsI GAGTC 1 cut(s) 52
PspPI GGNCC 1 cut(s) 401
PsuI RGATCY 1 cut(s) 301
RsaI GTAC 1 cut(s) 38
RsaNI GTAC 1 cut(s) 37
SaqAI TTAA 1 cut(s) 126
SatI GCNGC 2 cut(s) 174, 263
Sau3AI GATC 2 cut(s) 252, 301
Sau96I GGNCC 1 cut(s) 401
SchI GAGTC 1 cut(s) 53
SetI ASST 4 cut(s) 58, 126, 318, 334
SinI GGWCC 1 cut(s) 401
SmlI CTYRAG 1 cut(s) 32
SmoI CTYRAG 1 cut(s) 32
Sse9I AATT 7 cut(s) 10, 197, 242, 326, 373, 384, 392
SsiI CCGC 2 cut(s) 262, 270
SspI AATATT 1 cut(s) 353
TaaI ACNGT 1 cut(s) 401
TaqI TCGA 1 cut(s) 408
TasI AATT 7 cut(s) 10, 197, 242, 326, 373, 384, 392
TatI WGTACW 1 cut(s) 36
TauI GCSGC 1 cut(s) 265
TfiI GAWTC 2 cut(s) 16, 134
Tru1I TTAA 1 cut(s) 126
Tru9I TTAA 1 cut(s) 126
TseFI GTSAC 1 cut(s) 45
TseI GCWGC 1 cut(s) 173
Tsp45I GTSAC 1 cut(s) 45
TspDTI ATGAA 1 cut(s) 465
VpaK11BI GGWCC 1 cut(s) 401
XapI RAATTY 4 cut(s) 197, 242, 373, 392
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.