RLG00000034338

Protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000268
Physical Location & Seq
Reverse (-)
40983883 .. 40986538
2656 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000034338

Sequence Viewer

Length: 909 bp
ATGAAACCTGTAGCAAATATAAGTGTGGAAAGTCAGATGTCAAGTCAGGATGCATTAGATGAACCTCAACCTGAAATTTCAGACACTAATTTGCAAGAGTCTGAAAGTGGTATCAATCAGTTGGAATATAATGGCATTAGATATGATAAGTTGGCTCCAGAAGACATTATAGGCGTGAATTATAATAATGATGAAGAGAAAGAGTGCACAACTACTTATTACCATCGGGAAAGTGATCCTCGAGTAGTATGCTCTTGCAAACTTTATGAATGTGAAGGCATCCCATGTTCTCATTTATTTAATGTAATGAAGCATGAGCGCATGAGGGAGATACCTTTGTCCTTAGTATTAAAGCGGTGGACAAAGCAAGCTAAATCTGAAGTTCACTCCACAATTCCCAAGGAAAATATGCCTAGTGAAGCTGTACGATTGGCCAGGCATGGAGATTTAAGTTATTTAAGTAGCAGGGTATCATATCTTGCTTCACAGACAAAGGAGGGTACCGACATTTTGAAGAAAGAACTCAGCAGATTGGAGCCGATACTTGGAGATGTTTTGAAGCAACAAAAAGATGTAGGTGATAGTCCAGATCCATGTAATAACATTGTAAGAGATCCTATCAGGTTAGATTCCGTAAATCGTCGTGTGCAACTTGCCCTTTGGATGTTGAAGCACCCAAAGAACCAAGCATGGGTGAAAATTAATGAGGCTTTAGATAATGAAAACAAAAATGATGGTGCCAAGAACAAGATCAAGACAATAGAAGAAATTGACGAAGCTACTGGAAATAGTGTTGATCAACATCATGGCAAGAGCTATTCACAAGTCGTGCAGAGAAAAACCTCAACACTACAAGCAAGGGGTCGTGGTCGCCCTCGTGGTGCAAAGAATAAAAACTCTCGGAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

303

Amino Acids

34.35

Weight (kDa)

7.63

Isoelectric Point (pI)

50.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000268)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g23642 FvH4_2g09911 FvH4_2g09911 FvH4_2g09911 FvH4_3g18421 FvH4_4g05321 FvH4_6g28332 FvH4_7g31231
prunus_persica Prupe.2G063700_v2.0.a1 Prupe.5G238300_v2.0.a1 Prupe.6G153700_v2.0.a1 Prupe.7G017400_v2.0.a1 Prupe.7G070100_v2.0.a1 Prupe.7G070100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0345471 RchiOBHm_Chr1g0366901 RchiOBHm_Chr2g0162601 RchiOBHm_Chr6g0266661 RchiOBHm_Chr6g0266671
rosa_laevigata RLG00000005047 RLG00000007971 RLG00000008530 RLG00000009009 RLG00000009046 RLG00000014086 RLG00000017162 RLG00000017163 RLG00000017440 RLG00000019098 RLG00000022623 RLG00000024566 RLG00000027733 RLG00000029878 RLG00000029945 RLG00000030127 RLG00000030157 RLG00000031078 RLG00000031080 RLG00000034338 RLG00000034670
rosa_multiflora Rmu_sc0002106.1_g000007 Rmu_sc0002531.1_g000064 Rmu_sc0003433.1_g000005 Rmu_sc0004704.1_g000001 Rmu_sc0004704.1_g000002 Rmu_sc0004888.1_g000042 Rmu_sc0005599.1_g000031 Rmu_sc0006413.1_g000014 Rmu_sc0006413.1_g000018
rosa_roxburghii Rroxscaffold_1G00031940 Rroxscaffold_1G00032500 Rroxscaffold_1G00074770 Rroxscaffold_1G00074780 Rroxscaffold_1G00075150 Rroxscaffold_2G00125060 Rroxscaffold_2G00125070 Rroxscaffold_2G00125800 Rroxscaffold_2G00125820 Rroxscaffold_2G00139560 Rroxscaffold_2G00140550 Rroxscaffold_4G00314090 Rroxscaffold_6G00390050 Rroxscaffold_6G00390520 Rroxscaffold_6G00390530 Rroxscaffold_6G00428030 Rroxscaffold_7G00201570 Rroxscaffold_7G00201580 Rroxscaffold_7G00207070 Rroxscaffold_7G00207080 Rroxscaffold_7G00207240
rosa_rugosa Rorug01G0408000 Rorug01G0408100 Rorug01G0408100 Rorug01G0408200 Rorug02G0155200 Rorug02G0181500 Rorug02G0288400 Rorug03G0208600 Rorug03G0272300 Rorug06G0005500 Rorug06G0005600 Rorug06G0026300.1 Rorug06G0026400 Rorug06G0026500 Rorug06G0026600 Rorug06G0026600 Rorug06G0026600 Rorug06G0145800 Rorug07G0305200
rosa_samantha Rh1AG062100 Rh1BG131900 Rh1BG157000 Rh1CG021100 Rh1CG321600 Rh1DG188200 Rh2DG388300 Rh3AG320500 Rh3BG355400 Rh3CG352400 Rh3CG353200 Rh4AG045800 Rh4DG171700 Rh5AG196000 Rh5AG196100 Rh5CG346800 Rh6BG147600 Rh6BG147700 Rh6CG143200 Rh6CG143500 Rh6CG174600 Rh6CG391800 Rh6DG132100 Rh6DG132300 Rh6DG167100 Rh6DG167200 Rh7AG211600 Rh7BG307000 Rh7BG307300 Rh7BG398300
rosa_wichuraiana Rw0G001830 Rw0G001840 Rw0G018160 Rw0G018170 Rw3G028040 Rw5G017860 Rw5G026710 Rw6G012630 Rw6G012650 Rw6G012780 Rw6G012800 Rw7G019130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 183
Acc65I GGTACC 1 cut(s) 500
AccB1I GGYRCC 2 cut(s) 500, 737
AciI CCGC 1 cut(s) 355
AclWI GGATC 3 cut(s) 230, 584, 608
AcoI YGGCCR 1 cut(s) 432
AcsI RAATTY 1 cut(s) 75
AcuI CTGAAG 1 cut(s) 399
AfaI GTAC 2 cut(s) 426, 502
AfiI CCNNNNNNNGG 2 cut(s) 545, 691
AgsI TTSAA 3 cut(s) 514, 559, 670
AjnI CCWGG 1 cut(s) 434
AluBI AGCT 4 cut(s) 371, 422, 779, 816
AluI AGCT 4 cut(s) 371, 422, 779, 816
Alw21I GWGCWC 1 cut(s) 209
Alw44I GTGCAC 1 cut(s) 205
AlwI GGATC 3 cut(s) 230, 584, 608
Ama87I CYCGRG 1 cut(s) 240
AoxI GGCC 1 cut(s) 432
ApaLI GTGCAC 1 cut(s) 205
ApoI RAATTY 1 cut(s) 75
AseI ATTAAT 1 cut(s) 702
Asp718I GGTACC 1 cut(s) 500
AspLEI GCGC 1 cut(s) 321
AsuHPI GGTGA 2 cut(s) 590, 706
AvaI CYCGRG 1 cut(s) 240
BaeGI GKGCMC 1 cut(s) 209
BaeI ACNNNNGTAYC 2 cut(s) 323, 356
BalI TGGCCA 1 cut(s) 434
BanI GGYRCC 2 cut(s) 500, 737
BauI CACGAG 1 cut(s) 876
BbsI GAAGAC 1 cut(s) 168
Bbv12I GWGCWC 1 cut(s) 209
BccI CCATC 2 cut(s) 231, 728
BcgI CGANNNNNNTGC 2 cut(s) 231, 265
BciT130I CCWGG 1 cut(s) 436
BclI TGATCA 1 cut(s) 796
BfaI CTAG 1 cut(s) 414
BfmI CTRYAG 1 cut(s) 9
Bme1390I CCNGG 1 cut(s) 436
BmeT110I CYCGRG 1 cut(s) 240
BmiI GGNNCC 4 cut(s) 156, 502, 537, 739
BmrFI CCNGG 1 cut(s) 436
BmsI GCATC 2 cut(s) 40, 288
BpiI GAAGAC 1 cut(s) 168
BpmI CTGGAG 1 cut(s) 141
BsaBI GATNNNNATC 1 cut(s) 801
BsaJI CCNNGG 1 cut(s) 399
Bsc4I CCNNNNNNNGG 2 cut(s) 545, 691
Bse1I ACTGG 1 cut(s) 787
Bse8I GATNNNNATC 1 cut(s) 801
BseBI CCWGG 1 cut(s) 436
BseDI CCNNGG 1 cut(s) 399
BseGI GGATG 3 cut(s) 55, 279, 669
BseJI GATNNNNATC 1 cut(s) 801
BseLI CCNNNNNNNGG 2 cut(s) 545, 691
BseMII CTCAG 1 cut(s) 538
BseNI ACTGG 1 cut(s) 787
BseSI GKGCMC 1 cut(s) 209
BsgI GTGCAG 1 cut(s) 851
BshFI GGCC 1 cut(s) 434
BshNI GGYRCC 2 cut(s) 500, 737
BsiHKAI GWGCWC 1 cut(s) 209
BsiHKCI CYCGRG 1 cut(s) 240
BslI CCNNNNNNNGG 2 cut(s) 545, 691
BsnI GGCC 1 cut(s) 434
BsoBI CYCGRG 1 cut(s) 240
Bsp1286I GDGCHC 1 cut(s) 209
Bsp143I GATC 5 cut(s) 235, 589, 613, 750, 796
BspACI CCGC 1 cut(s) 355
BspANI GGCC 1 cut(s) 434
BspCNI CTCAG 1 cut(s) 537
BspLI GGNNCC 4 cut(s) 156, 502, 537, 739
BspPI GGATC 3 cut(s) 230, 584, 608
BspT107I GGYRCC 2 cut(s) 500, 737
BsrI ACTGG 1 cut(s) 787
BssECI CCNNGG 1 cut(s) 399
BssMI GATC 5 cut(s) 235, 589, 613, 750, 796
BssSI CACGAG 1 cut(s) 876
BssT1I CCWWGG 1 cut(s) 399
Bst2BI CACGAG 1 cut(s) 876
Bst2UI CCWGG 1 cut(s) 436
Bst6I CTCTTC 1 cut(s) 189
BstC8I GCNNGC 1 cut(s) 369
BstDEI CTNAG 2 cut(s) 343, 524
BstF5I GGATG 3 cut(s) 55, 279, 669
BstHHI GCGC 1 cut(s) 321
BstKTI GATC 5 cut(s) 238, 592, 616, 753, 799
BstMBI GATC 5 cut(s) 235, 589, 613, 750, 796
BstNI CCWGG 1 cut(s) 436
BstSCI CCNGG 1 cut(s) 434
BstSFI CTRYAG 1 cut(s) 9
BstSLI GKGCMC 1 cut(s) 209
BstV2I GAAGAC 1 cut(s) 168
BstX2I RGATCY 2 cut(s) 589, 613
BstYI RGATCY 2 cut(s) 589, 613
BsuRI GGCC 1 cut(s) 434
BtsCI GGATG 3 cut(s) 55, 279, 669
Cac8I GCNNGC 1 cut(s) 369
CfoI GCGC 1 cut(s) 321
Csp6I GTAC 2 cut(s) 425, 501
CviAII CATG 7 cut(s) 285, 314, 322, 440, 594, 690, 806
CviJI RGCY 8 cut(s) 155, 371, 422, 434, 538, 710, 779, 816
CviKI_1 RGCY 8 cut(s) 155, 371, 422, 434, 538, 710, 779, 816
CviQI GTAC 2 cut(s) 425, 501
DdeI CTNAG 2 cut(s) 343, 524
DpnI GATC 5 cut(s) 237, 591, 615, 752, 798
DpnII GATC 5 cut(s) 235, 589, 613, 750, 796
EaeI YGGCCR 1 cut(s) 432
Eam1104I CTCTTC 1 cut(s) 189
EarI CTCTTC 1 cut(s) 189
Eco130I CCWWGG 1 cut(s) 399
Eco57I CTGAAG 1 cut(s) 399
Eco88I CYCGRG 1 cut(s) 240
EcoRII CCWGG 1 cut(s) 434
EcoT14I CCWWGG 1 cut(s) 399
EcoT22I ATGCAT 1 cut(s) 55
ErhI CCWWGG 1 cut(s) 399
FaeI CATG 7 cut(s) 288, 317, 325, 443, 597, 693, 809
FatI CATG 7 cut(s) 284, 313, 321, 439, 593, 689, 805
FbaI TGATCA 1 cut(s) 796
FokI GGATG 3 cut(s) 62, 266, 676
FspBI CTAG 1 cut(s) 414
GlaI GCGC 1 cut(s) 320
GsuI CTGGAG 1 cut(s) 141
HaeIII GGCC 1 cut(s) 434
HhaI GCGC 1 cut(s) 321
Hin1II CATG 7 cut(s) 288, 317, 325, 443, 597, 693, 809
Hin6I GCGC 1 cut(s) 319
HinP1I GCGC 1 cut(s) 319
HinfI GANTC 2 cut(s) 98, 629
HphI GGTGA 2 cut(s) 590, 706
Hpy166II GTNNAC 3 cut(s) 207, 360, 385
Hpy188I TCNGA 5 cut(s) 36, 82, 103, 379, 903
Hpy188III TCNNGA 5 cut(s) 47, 158, 227, 587, 754
Hpy8I GTNNAC 3 cut(s) 207, 360, 385
Hpy99I CGWCG 1 cut(s) 645
HpyAV CCTTC 1 cut(s) 269
HpyCH4V TGCA 7 cut(s) 53, 94, 207, 258, 649, 832, 884
HpyF3I CTNAG 2 cut(s) 343, 524
Hsp92II CATG 7 cut(s) 288, 317, 325, 443, 597, 693, 809
HspAI GCGC 1 cut(s) 319
KpnI GGTACC 1 cut(s) 504
Ksp22I TGATCA 1 cut(s) 796
Kzo9I GATC 5 cut(s) 235, 589, 613, 750, 796
LmnI GCTCC 2 cut(s) 160, 535
LweI GCATC 2 cut(s) 40, 288
MaeI CTAG 1 cut(s) 414
MalI GATC 5 cut(s) 237, 591, 615, 752, 798
MboI GATC 5 cut(s) 235, 589, 613, 750, 796
MboII GAAGA 4 cut(s) 173, 206, 526, 776
MflI RGATCY 2 cut(s) 589, 613
MhlI GDGCHC 1 cut(s) 209
MlsI TGGCCA 1 cut(s) 434
MluCI AATT 6 cut(s) 75, 88, 178, 393, 699, 768
MluNI TGGCCA 1 cut(s) 434
MlyI GAGTC 1 cut(s) 107
MmeI TCCRAC 1 cut(s) 102
MnlI CCTC 7 cut(s) 75, 249, 318, 490, 700, 853, 885
Mox20I TGGCCA 1 cut(s) 434
Mph1103I ATGCAT 1 cut(s) 55
MscI TGGCCA 1 cut(s) 434
MseI TTAA 5 cut(s) 300, 350, 449, 458, 702
Msp20I TGGCCA 1 cut(s) 434
MspR9I CCNGG 1 cut(s) 436
MvaI CCWGG 1 cut(s) 436
NdeII GATC 5 cut(s) 235, 589, 613, 750, 796
NlaIII CATG 7 cut(s) 288, 317, 325, 443, 597, 693, 809
NlaIV GGNNCC 4 cut(s) 156, 502, 537, 739
NsiI ATGCAT 1 cut(s) 55
PaeR7I CTCGAG 1 cut(s) 240
PfeI GAWTC 1 cut(s) 629
PleI GAGTC 1 cut(s) 106
PpsI GAGTC 1 cut(s) 106
PshBI ATTAAT 1 cut(s) 702
PsiI TTATAA 1 cut(s) 183
Psp6I CCWGG 1 cut(s) 434
PspGI CCWGG 1 cut(s) 434
PspN4I GGNNCC 4 cut(s) 156, 502, 537, 739
PspXI VCTCGAGB 1 cut(s) 240
PsuI RGATCY 2 cut(s) 589, 613
RsaI GTAC 2 cut(s) 426, 502
RsaNI GTAC 2 cut(s) 425, 501
SaqAI TTAA 5 cut(s) 300, 350, 449, 458, 702
Sau3AI GATC 5 cut(s) 235, 589, 613, 750, 796
SchI GAGTC 1 cut(s) 107
ScrFI CCNGG 1 cut(s) 436
SduI GDGCHC 1 cut(s) 209
SfaNI GCATC 2 cut(s) 40, 288
SfcI CTRYAG 1 cut(s) 9
Sfr274I CTCGAG 1 cut(s) 240
SlaI CTCGAG 1 cut(s) 240
SmlI CTYRAG 1 cut(s) 240
SmoI CTYRAG 1 cut(s) 240
Sse9I AATT 6 cut(s) 75, 88, 178, 393, 699, 768
SsiI CCGC 1 cut(s) 355
SspMI CTAG 1 cut(s) 414
StyD4I CCNGG 1 cut(s) 434
StyI CCWWGG 1 cut(s) 399
TaqI TCGA 1 cut(s) 241
TasI AATT 6 cut(s) 75, 88, 178, 393, 699, 768
TfiI GAWTC 1 cut(s) 629
Tru1I TTAA 5 cut(s) 300, 350, 449, 458, 702
Tru9I TTAA 5 cut(s) 300, 350, 449, 458, 702
TspDTI ATGAA 6 cut(s) 17, 75, 207, 282, 323, 735
TspGWI ACGGA 1 cut(s) 622
VneI GTGCAC 1 cut(s) 205
VspI ATTAAT 1 cut(s) 702
XapI RAATTY 1 cut(s) 75
XhoI CTCGAG 1 cut(s) 240
XspI CTAG 1 cut(s) 414
Zsp2I ATGCAT 1 cut(s) 55
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.