Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0000268

Physical Location & Seq

Genomic Coordinates Forward (+)

95932812 .. 95934746

Gene Structure 1935 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00075150.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGGGAAATAAAATAGATCTTATAACTGCAAAATTTATGGAGGATAAGCCAAGAAAACTGCAAGATATTGGTCCTTTCACAGGGTGTCGTGATCTTTATGATGACGACGTATATTTGATTGCATTTGTATTTTTGGAGACGGAAGATGTGGAAATTTTTCAAACTGATTATGAACATCTTGACCGTTTAGCAATGAAATGCCTAGAGCCGGGGGACTTGTTACATCTGAGGGGTAGAGCAATTGAGGCTGCCAAGAAAGGAGGCGATGATTGGCTGGAATTTGTTGCCACAGCACCAAAAAGGTTTGCTGCAATATTACAATATAGAAAAGGCCTTAAGAATGGAGAAAAGATATTCATCCCCATGCTGGATCCAGATACTACCCCACGGCACTGGTTCTTCATTGTGATTAAAATAGCGACAACATATGTAGAAATATGGGACACCTGCCCGAGCCCTGCACGCAAAATGGCTCGAAATGATCTTGTTTATTATGTGCTTTTGGCATTGGACACAATATTTGACACTGAAATCCAAAGCTGTTTCAAGAAAGGATGGTCGTTTTGTTCATTCACAGTTAGGAATGTAGATGACATTGAGTTCCAACAAAATGACTTCGATTGTGGCATTTTCATGCTTAGATACATAATAAATTATGATAATCCGTTGAAAGATGAGTTGGATTCGGTAAATCGTCGTGTGCAACTTGCCCTATGGATGTTGAAGCACCCGAAGAACCAAGCATGGCTGAAAATAAATGAGGCTTTAGATAATGAAAACAAAAATGATGGTGCCCAGAAAAAGATAAAGACAATAGAAGACATTGATGAAGCTATTGGAAATAGTAATGAGAAGGCAGAGTTGTGTTTTGTGCAAGTGATAAAAGAACCAAAACAAAAGTGCTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006282 GO:0006464 GO:0006508 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008233 GO:0009790 GO:0009792 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010556 GO:0010557 GO:0010604 GO:0016787 GO:0016926 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032879 GO:0032880 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045739 GO:0045935 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048856 GO:0050789 GO:0050794 GO:0051052 GO:0051054 GO:0051171 GO:0051173 GO:0060255 GO:0065007 GO:0070011 GO:0070646 GO:0070647 GO:0071704 GO:0080090 GO:0080134 GO:0080135 GO:0140096 GO:1901564 GO:1904331 GO:1904333 GO:2000112 GO:2000278 GO:2000573 GO:2001020 GO:2001022

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_C48

Protein Analysis

302

Amino Acids

35.09

Weight (kDa)

5.15

Isoelectric Point (pI)

33.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_C48	PF02902	112 - 216	2.6e-08	Ulp1 protease family, C-terminal catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000268)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g23642 FvH4_2g09911 FvH4_2g09911 FvH4_2g09911 FvH4_3g18421 FvH4_4g05321 FvH4_6g28332 FvH4_7g31231
prunus_persica	Prupe.2G063700_v2.0.a1 Prupe.5G238300_v2.0.a1 Prupe.6G153700_v2.0.a1 Prupe.7G017400_v2.0.a1 Prupe.7G070100_v2.0.a1 Prupe.7G070100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0345471 RchiOBHm_Chr1g0366901 RchiOBHm_Chr2g0162601 RchiOBHm_Chr6g0266661 RchiOBHm_Chr6g0266671
rosa_laevigata	RLG00000005047 RLG00000007971 RLG00000008530 RLG00000009009 RLG00000009046 RLG00000014086 RLG00000017162 RLG00000017163 RLG00000017440 RLG00000019098 RLG00000022623 RLG00000024566 RLG00000027733 RLG00000029878 RLG00000029945 RLG00000030127 RLG00000030157 RLG00000031078 RLG00000031080 RLG00000034338 RLG00000034670
rosa_multiflora	Rmu_sc0002106.1_g000007 Rmu_sc0002531.1_g000064 Rmu_sc0003433.1_g000005 Rmu_sc0004704.1_g000001 Rmu_sc0004704.1_g000002 Rmu_sc0004888.1_g000042 Rmu_sc0005599.1_g000031 Rmu_sc0006413.1_g000014 Rmu_sc0006413.1_g000018
rosa_roxburghii	Rroxscaffold_1G00031940 Rroxscaffold_1G00032500 Rroxscaffold_1G00074770 Rroxscaffold_1G00074780 Rroxscaffold_1G00075150 Rroxscaffold_2G00125060 Rroxscaffold_2G00125070 Rroxscaffold_2G00125800 Rroxscaffold_2G00125820 Rroxscaffold_2G00139560 Rroxscaffold_2G00140550 Rroxscaffold_4G00314090 Rroxscaffold_6G00390050 Rroxscaffold_6G00390520 Rroxscaffold_6G00390530 Rroxscaffold_6G00428030 Rroxscaffold_7G00201570 Rroxscaffold_7G00201580 Rroxscaffold_7G00207070 Rroxscaffold_7G00207080 Rroxscaffold_7G00207240
rosa_rugosa	Rorug01G0408000 Rorug01G0408100 Rorug01G0408100 Rorug01G0408200 Rorug02G0155200 Rorug02G0181500 Rorug02G0288400 Rorug03G0208600 Rorug03G0272300 Rorug06G0005500 Rorug06G0005600 Rorug06G0026300.1 Rorug06G0026400 Rorug06G0026500 Rorug06G0026600 Rorug06G0026600 Rorug06G0026600 Rorug06G0145800 Rorug07G0305200
rosa_samantha	Rh1AG062100 Rh1BG131900 Rh1BG157000 Rh1CG021100 Rh1CG321600 Rh1DG188200 Rh2DG388300 Rh3AG320500 Rh3BG355400 Rh3CG352400 Rh3CG353200 Rh4AG045800 Rh4DG171700 Rh5AG196000 Rh5AG196100 Rh5CG346800 Rh6BG147600 Rh6BG147700 Rh6CG143200 Rh6CG143500 Rh6CG174600 Rh6CG391800 Rh6DG132100 Rh6DG132300 Rh6DG167100 Rh6DG167200 Rh7AG211600 Rh7BG307000 Rh7BG307300 Rh7BG398300
rosa_wichuraiana	Rw0G001830 Rw0G001840 Rw0G018160 Rw0G018170 Rw3G028040 Rw5G017860 Rw5G026710 Rw6G012630 Rw6G012650 Rw6G012780 Rw6G012800 Rw7G019130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	23
AarI	CACCTGC	1 cut(s)	455
Acc36I	ACCTGC	1 cut(s)	455
AccB1I	GGYRCC	1 cut(s)	791
AclWI	GGATC	2 cut(s)	365, 378
AcsI	RAATTY	3 cut(s)	32, 153, 278
AdeI	CACNNNGTG	1 cut(s)	84
AfiI	CCNNNNNNNGG	3 cut(s)	80, 208, 367
AflII	CTTAAG	1 cut(s)	335
AgsI	TTSAA	4 cut(s)	161, 547, 670, 724
AjuI	GAANNNNNNNTTGG	2 cut(s)	662, 694
AluBI	AGCT	2 cut(s)	540, 833
AluI	AGCT	2 cut(s)	540, 833
Alw21I	GWGCWC	1 cut(s)	905
Alw26I	GTCTC	1 cut(s)	131
AlwI	GGATC	2 cut(s)	365, 378
Ama87I	CYCGRG	1 cut(s)	451
AoxI	GGCC	1 cut(s)	331
ApeKI	GCWGC	2 cut(s)	248, 308
ApoI	RAATTY	3 cut(s)	32, 153, 278
ArsI	GACNNNNNNTTYG	2 cut(s)	503, 535
Asp700I	GAANNNNTTC	1 cut(s)	156
AspS9I	GGNCC	1 cut(s)	71
AsuC2I	CCSGG	1 cut(s)	210
AvaI	CYCGRG	1 cut(s)	451
AvaII	GGWCC	1 cut(s)	71
BaeGI	GKGCMC	1 cut(s)	796
BamHI	GGATCC	1 cut(s)	370
BanI	GGYRCC	1 cut(s)	791
BanII	GRGCYC	1 cut(s)	458
BbsI	GAAGAC	1 cut(s)	825
Bbv12I	GWGCWC	1 cut(s)	905
BbvI	GCAGC	2 cut(s)	235, 295
BccI	CCATC	2 cut(s)	549, 782
BceAI	ACGGC	1 cut(s)	404
BcnI	CCSGG	1 cut(s)	210
BcoDI	GTCTC	1 cut(s)	131
BfaI	CTAG	1 cut(s)	203
BfrI	CTTAAG	1 cut(s)	335
BfuAI	ACCTGC	1 cut(s)	455
BglII	AGATCT	1 cut(s)	16
BisI	GCNGC	2 cut(s)	249, 309
BlsI	GCNGC	2 cut(s)	250, 310
Bme1390I	CCNGG	1 cut(s)	210
Bme18I	GGWCC	1 cut(s)	71
BmeT110I	CYCGRG	1 cut(s)	451
BmgT120I	GGNCC	1 cut(s)	71
BmiI	GGNNCC	2 cut(s)	372, 793
BmrFI	CCNGG	1 cut(s)	210
BpiI	GAAGAC	1 cut(s)	825
BpuMI	CCSGG	1 cut(s)	210
BsaBI	GATNNNNATC	1 cut(s)	356
BsaJI	CCNNGG	2 cut(s)	209, 386
Bsc4I	CCNNNNNNNGG	3 cut(s)	80, 208, 367
Bse1I	ACTGG	1 cut(s)	398
Bse3DI	GCAATG	1 cut(s)	198
Bse8I	GATNNNNATC	1 cut(s)	356
BseDI	CCNNGG	2 cut(s)	209, 386
BseGI	GGATG	3 cut(s)	357, 560, 723
BseJI	GATNNNNATC	1 cut(s)	356
BseLI	CCNNNNNNNGG	3 cut(s)	80, 208, 367
BseMI	GCAATG	1 cut(s)	198
BseMII	CTCAG	1 cut(s)	218
BseNI	ACTGG	1 cut(s)	398
BseSI	GKGCMC	1 cut(s)	796
BseXI	GCAGC	2 cut(s)	235, 295
BsgI	GTGCAG	1 cut(s)	444
BshFI	GGCC	1 cut(s)	333
BshNI	GGYRCC	1 cut(s)	791
BsiHKAI	GWGCWC	1 cut(s)	905
BsiHKCI	CYCGRG	1 cut(s)	451
BsiSI	CCGG	1 cut(s)	209
BslFI	GGGAC	2 cut(s)	227, 455
BslI	CCNNNNNNNGG	3 cut(s)	80, 208, 367
BsmAI	GTCTC	1 cut(s)	131
BsmBI	CGTCTC	1 cut(s)	131
BsmFI	GGGAC	2 cut(s)	227, 455
BsnI	GGCC	1 cut(s)	333
BsoBI	CYCGRG	1 cut(s)	451
Bsp1286I	GDGCHC	3 cut(s)	458, 796, 905
Bsp143I	GATC	4 cut(s)	16, 91, 370, 481
BspANI	GGCC	1 cut(s)	333
BspCNI	CTCAG	1 cut(s)	219
BspLI	GGNNCC	2 cut(s)	372, 793
BspMI	ACCTGC	1 cut(s)	455
BspPI	GGATC	2 cut(s)	365, 378
BspT107I	GGYRCC	1 cut(s)	791
BspTI	CTTAAG	1 cut(s)	335
BsrDI	GCAATG	1 cut(s)	198
BsrI	ACTGG	1 cut(s)	398
BssECI	CCNNGG	2 cut(s)	209, 386
BssMI	GATC	4 cut(s)	16, 91, 370, 481
Bst4CI	ACNGT	2 cut(s)	185, 577
BstAFI	CTTAAG	1 cut(s)	335
BstC8I	GCNNGC	1 cut(s)	463
BstDEI	CTNAG	2 cut(s)	227, 638
BstDSI	CCRYGG	1 cut(s)	386
BstENI	CCTNNNNNAGG	1 cut(s)	78
BstF5I	GGATG	3 cut(s)	357, 560, 723
BstKTI	GATC	4 cut(s)	19, 94, 373, 484
BstMAI	GTCTC	1 cut(s)	131
BstMBI	GATC	4 cut(s)	16, 91, 370, 481
BstMWI	GCNNNNNNNGC	2 cut(s)	245, 462
BstSCI	CCNGG	1 cut(s)	208
BstSLI	GKGCMC	1 cut(s)	796
BstV1I	GCAGC	2 cut(s)	235, 295
BstV2I	GAAGAC	1 cut(s)	825
BstX2I	RGATCY	2 cut(s)	16, 370
BstXI	CCANNNNNNTGG	1 cut(s)	393
BstYI	RGATCY	2 cut(s)	16, 370
BsuRI	GGCC	1 cut(s)	333
BtgI	CCRYGG	1 cut(s)	386
BtgZI	GCGATG	1 cut(s)	279
BtsCI	GGATG	3 cut(s)	357, 560, 723
BtsIMutI	CAGTG	2 cut(s)	391, 525
BveI	ACCTGC	1 cut(s)	455
Cac8I	GCNNGC	1 cut(s)	463
Cfr13I	GGNCC	1 cut(s)	71
CviAII	CATG	3 cut(s)	364, 634, 744
DdeI	CTNAG	2 cut(s)	227, 638
DpnI	GATC	4 cut(s)	18, 93, 372, 483
DpnII	GATC	4 cut(s)	16, 91, 370, 481
DraIII	CACNNNGTG	1 cut(s)	84
Eco147I	AGGCCT	1 cut(s)	333
Eco24I	GRGCYC	1 cut(s)	458
Eco47I	GGWCC	1 cut(s)	71
Eco88I	CYCGRG	1 cut(s)	451
EcoNI	CCTNNNNNAGG	1 cut(s)	78
EcoT38I	GRGCYC	1 cut(s)	458
Esp3I	CGTCTC	1 cut(s)	131
FaeI	CATG	3 cut(s)	367, 637, 747
FaqI	GGGAC	2 cut(s)	227, 455
FatI	CATG	3 cut(s)	363, 633, 743
FauNDI	CATATG	1 cut(s)	427
Fnu4HI	GCNGC	2 cut(s)	249, 309
FokI	GGATG	3 cut(s)	344, 567, 730
FriOI	GRGCYC	1 cut(s)	458
Fsp4HI	GCNGC	2 cut(s)	249, 309
FspBI	CTAG	1 cut(s)	203
GluI	GCNGC	2 cut(s)	249, 309
HaeIII	GGCC	1 cut(s)	333
HapII	CCGG	1 cut(s)	209
Hin1II	CATG	3 cut(s)	367, 637, 747
HinfI	GANTC	1 cut(s)	683
HpaII	CCGG	1 cut(s)	209
Hpy188I	TCNGA	1 cut(s)	228
Hpy188III	TCNNGA	4 cut(s)	89, 179, 374, 547
Hpy99I	CGWCG	2 cut(s)	110, 699
HpyAV	CCTTC	1 cut(s)	847
HpyCH4III	ACNGT	2 cut(s)	185, 577
HpyCH4IV	ACGT	1 cut(s)	108
HpyCH4V	TGCA	7 cut(s)	29, 61, 122, 311, 461, 703, 874
HpyF10VI	GCNNNNNNNGC	2 cut(s)	245, 462
HpyF3I	CTNAG	2 cut(s)	227, 638
HpySE526I	ACGT	1 cut(s)	108
Hsp92II	CATG	3 cut(s)	367, 637, 747
Kzo9I	GATC	4 cut(s)	16, 91, 370, 481
LpnPI	CCDG	9 cut(s)	66, 222, 260, 353, 379, 387, 460, 471, 809
Lsp1109I	GCAGC	2 cut(s)	235, 295
MaeI	CTAG	1 cut(s)	203
MaeII	ACGT	1 cut(s)	108
MaeIII	GTNAC	1 cut(s)	219
MalI	GATC	4 cut(s)	18, 93, 372, 483
MboI	GATC	4 cut(s)	16, 91, 370, 481
MboII	GAAGA	4 cut(s)	155, 391, 745, 830
MfeI	CAATTG	1 cut(s)	240
MflI	RGATCY	2 cut(s)	16, 370
MhlI	GDGCHC	3 cut(s)	458, 796, 905
MluCI	AATT	5 cut(s)	32, 153, 240, 278, 652
MmeI	TCCRAC	2 cut(s)	628, 660
MnlI	CCTC	5 cut(s)	34, 222, 238, 254, 754
MroXI	GAANNNNTTC	1 cut(s)	156
MseI	TTAA	2 cut(s)	336, 411
MslI	CAYNNNNRTG	2 cut(s)	362, 632
MspCI	CTTAAG	1 cut(s)	335
MspI	CCGG	1 cut(s)	209
MspR9I	CCNGG	1 cut(s)	210
MunI	CAATTG	1 cut(s)	240
MwoI	GCNNNNNNNGC	2 cut(s)	245, 462
NciI	CCSGG	1 cut(s)	210
NdeI	CATATG	1 cut(s)	427
NdeII	GATC	4 cut(s)	16, 91, 370, 481
NlaIII	CATG	3 cut(s)	367, 637, 747
NlaIV	GGNNCC	2 cut(s)	372, 793
PaqCI	CACCTGC	1 cut(s)	455
PceI	AGGCCT	1 cut(s)	333
PdmI	GAANNNNTTC	1 cut(s)	156
PfeI	GAWTC	1 cut(s)	683
PkrI	GCNGC	2 cut(s)	250, 310
PsiI	TTATAA	1 cut(s)	23
PspN4I	GGNNCC	2 cut(s)	372, 793
PspPI	GGNCC	1 cut(s)	71
PsuI	RGATCY	2 cut(s)	16, 370
RseI	CAYNNNNRTG	2 cut(s)	362, 632
SaqAI	TTAA	2 cut(s)	336, 411
SatI	GCNGC	2 cut(s)	249, 309
Sau3AI	GATC	4 cut(s)	16, 91, 370, 481
Sau96I	GGNCC	1 cut(s)	71
ScrFI	CCNGG	1 cut(s)	210
SduI	GDGCHC	3 cut(s)	458, 796, 905
SetI	ASST	5 cut(s)	111, 305, 449, 542, 835
SinI	GGWCC	1 cut(s)	71
SmiMI	CAYNNNNRTG	2 cut(s)	362, 632
SmlI	CTYRAG	1 cut(s)	335
SmoI	CTYRAG	1 cut(s)	335
Sse9I	AATT	5 cut(s)	32, 153, 240, 278, 652
SseBI	AGGCCT	1 cut(s)	333
SspI	AATATT	2 cut(s)	315, 519
SspMI	CTAG	1 cut(s)	203
StuI	AGGCCT	1 cut(s)	333
StyD4I	CCNGG	1 cut(s)	208
TaaI	ACNGT	2 cut(s)	185, 577
TaiI	ACGT	1 cut(s)	111
TaqI	TCGA	2 cut(s)	475, 618
TasI	AATT	5 cut(s)	32, 153, 240, 278, 652
TfiI	GAWTC	1 cut(s)	683
Tru1I	TTAA	2 cut(s)	336, 411
Tru9I	TTAA	2 cut(s)	336, 411
TscAI	CASTG	2 cut(s)	398, 532
TseI	GCWGC	2 cut(s)	248, 308
TspDTI	ATGAA	8 cut(s)	186, 209, 346, 391, 558, 622, 789, 843
TspGWI	ACGGA	2 cut(s)	155, 654
TspRI	CASTG	2 cut(s)	398, 532
Vha464I	CTTAAG	1 cut(s)	335
VpaK11BI	GGWCC	1 cut(s)	71
XagI	CCTNNNNNAGG	1 cut(s)	78
XapI	RAATTY	3 cut(s)	32, 153, 278
XmnI	GAANNNNTTC	1 cut(s)	156
XspI	CTAG	1 cut(s)	203

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.