RLG00000009046

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0000268
Physical Location & Seq
Reverse (-)
45530632 .. 45532562
1931 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000009046

Sequence Viewer

Length: 1011 bp
ATGTCAAGTCAGGATGCATCAGATGAACCTCAAGCTGAGATGTCAGACACTAATTTGCAAGAGTATAGTTTGGAAACTGAAAGTGACATCAATCAGTTGCAAGATCCCAAGAATCTTCAACGCACTGTTGAAAGAAAGCCTGGCCATCAAATCTCAAGTCCATTTGTGCATTTAGGGAAGTTGGAAGTGATGGGGAATAAAATAGATCTTTTAACTGCAAAACTTATGGAGGATAAGCCAAGAAAGCTGCAAAATATTGGTCCTTTCACAAGGTGTCGTGATCTTTATGATGACGACGTATATTTGATTGCATTTGTATTTCTGGAATCGGAAAATCTAGAAATTTTTCAAACTGATTATGAACATCTTGACCGTTTGCCAATGAAATGCCTAGAGCCGGGGGGACTTGTTATCTCCGAGGATAGAGCAATTAAGGCTGCCAAGAAAGGAGGTAATGATTTGTTAGAATTTGCTGCCACGGCACCAAAGAGGTTTGCCATATTTATCCCCATCCTAGATCCAGATACTACCCCAAACCACTGGTTCTTCATTGTGATTAAATTAGCGAGAACGGATGTAGAGATATGGGATACTTACCCGAACCCTGCACACACTATGGCTAGAAATGATCTTATGACATTCACATTCAACAAAACAACTTCGATTGTGGCATTTTCATGCTCAGATCGATACATAATAAACTATGATAATCCGTTGAAAGATGAGTTAGAATCTATAAATTGTCATGTGCAACTTGCCCTTTGGATGTTGAAGCACCCAAAGAACCAAGCATGGGTGAAAATTAATGAGGCTTTAGATAATGAAAACAAAAATGATGGTGCCAAGAACAAGATCAAGACAATAGAAGAAATTGATGAAGCTACTGGAAATAGTGTTGATCAACTTCATGGCAAGAGCTGTTTAAAAGTCGTGCAGAGAAAAACCTCAACACTACAAGCAAGGGGTCGTGGTCGCCCTCATGATGCAAAGAATAAAAACTCTCAAAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

337

Amino Acids

38.33

Weight (kDa)

5.67

Isoelectric Point (pI)

38.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000268)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g23642 FvH4_2g09911 FvH4_2g09911 FvH4_2g09911 FvH4_3g18421 FvH4_4g05321 FvH4_6g28332 FvH4_7g31231
prunus_persica Prupe.2G063700_v2.0.a1 Prupe.5G238300_v2.0.a1 Prupe.6G153700_v2.0.a1 Prupe.7G017400_v2.0.a1 Prupe.7G070100_v2.0.a1 Prupe.7G070100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0345471 RchiOBHm_Chr1g0366901 RchiOBHm_Chr2g0162601 RchiOBHm_Chr6g0266661 RchiOBHm_Chr6g0266671
rosa_laevigata RLG00000005047 RLG00000007971 RLG00000008530 RLG00000009009 RLG00000009046 RLG00000014086 RLG00000017162 RLG00000017163 RLG00000017440 RLG00000019098 RLG00000022623 RLG00000024566 RLG00000027733 RLG00000029878 RLG00000029945 RLG00000030127 RLG00000030157 RLG00000031078 RLG00000031080 RLG00000034338 RLG00000034670
rosa_multiflora Rmu_sc0002106.1_g000007 Rmu_sc0002531.1_g000064 Rmu_sc0003433.1_g000005 Rmu_sc0004704.1_g000001 Rmu_sc0004704.1_g000002 Rmu_sc0004888.1_g000042 Rmu_sc0005599.1_g000031 Rmu_sc0006413.1_g000014 Rmu_sc0006413.1_g000018
rosa_roxburghii Rroxscaffold_1G00031940 Rroxscaffold_1G00032500 Rroxscaffold_1G00074770 Rroxscaffold_1G00074780 Rroxscaffold_1G00075150 Rroxscaffold_2G00125060 Rroxscaffold_2G00125070 Rroxscaffold_2G00125800 Rroxscaffold_2G00125820 Rroxscaffold_2G00139560 Rroxscaffold_2G00140550 Rroxscaffold_4G00314090 Rroxscaffold_6G00390050 Rroxscaffold_6G00390520 Rroxscaffold_6G00390530 Rroxscaffold_6G00428030 Rroxscaffold_7G00201570 Rroxscaffold_7G00201580 Rroxscaffold_7G00207070 Rroxscaffold_7G00207080 Rroxscaffold_7G00207240
rosa_rugosa Rorug01G0408000 Rorug01G0408100 Rorug01G0408100 Rorug01G0408200 Rorug02G0155200 Rorug02G0181500 Rorug02G0288400 Rorug03G0208600 Rorug03G0272300 Rorug06G0005500 Rorug06G0005600 Rorug06G0026300.1 Rorug06G0026400 Rorug06G0026500 Rorug06G0026600 Rorug06G0026600 Rorug06G0026600 Rorug06G0145800 Rorug07G0305200
rosa_samantha Rh1AG062100 Rh1BG131900 Rh1BG157000 Rh1CG021100 Rh1CG321600 Rh1DG188200 Rh2DG388300 Rh3AG320500 Rh3BG355400 Rh3CG352400 Rh3CG353200 Rh4AG045800 Rh4DG171700 Rh5AG196000 Rh5AG196100 Rh5CG346800 Rh6BG147600 Rh6BG147700 Rh6CG143200 Rh6CG143500 Rh6CG174600 Rh6CG391800 Rh6DG132100 Rh6DG132300 Rh6DG167100 Rh6DG167200 Rh7AG211600 Rh7BG307000 Rh7BG307300 Rh7BG398300
rosa_wichuraiana Rw0G001830 Rw0G001840 Rw0G018160 Rw0G018170 Rw3G028040 Rw5G017860 Rw5G026710 Rw6G012630 Rw6G012650 Rw6G012780 Rw6G012800 Rw7G019130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 481, 839
AclWI GGATC 2 cut(s) 98, 512
AcoI YGGCCR 1 cut(s) 142
AcsI RAATTY 2 cut(s) 342, 467
AdeI CACNNNGTG 1 cut(s) 273
AfiI CCNNNNNNNGG 2 cut(s) 397, 793
AgsI TTSAA 6 cut(s) 119, 131, 350, 649, 718, 772
AjnI CCWGG 1 cut(s) 139
AluBI AGCT 4 cut(s) 35, 247, 881, 918
AluI AGCT 4 cut(s) 35, 247, 881, 918
AlwI GGATC 2 cut(s) 98, 512
AoxI GGCC 1 cut(s) 142
ApeKI GCWGC 3 cut(s) 247, 437, 473
ApoI RAATTY 2 cut(s) 342, 467
ArsI GACNNNNNNTTYG 4 cut(s) 142, 174, 244, 276
AseI ATTAAT 1 cut(s) 804
Asp700I GAANNNNTTC 1 cut(s) 345
AspS9I GGNCC 1 cut(s) 260
AsuC2I CCSGG 1 cut(s) 399
AsuHPI GGTGA 1 cut(s) 808
AvaII GGWCC 1 cut(s) 260
BalI TGGCCA 1 cut(s) 144
BanI GGYRCC 2 cut(s) 481, 839
BbvI GCAGC 3 cut(s) 234, 424, 460
BccI CCATC 4 cut(s) 153, 184, 518, 830
BceAI ACGGC 1 cut(s) 495
BciT130I CCWGG 1 cut(s) 141
BciVI GTATCC 1 cut(s) 583
BclI TGATCA 1 cut(s) 898
BcnI CCSGG 1 cut(s) 399
BfaI CTAG 4 cut(s) 338, 392, 515, 621
BfuI GTATCC 1 cut(s) 583
BglII AGATCT 1 cut(s) 205
BisI GCNGC 3 cut(s) 248, 438, 474
BlsI GCNGC 3 cut(s) 249, 439, 475
Bme1390I CCNGG 2 cut(s) 141, 399
Bme18I GGWCC 1 cut(s) 260
BmgT120I GGNCC 1 cut(s) 260
BmiI GGNNCC 2 cut(s) 483, 841
BmrFI CCNGG 2 cut(s) 141, 399
BmsI GCATC 3 cut(s) 4, 26, 973
BpuEI CTTGAG 2 cut(s) 15, 139
BpuMI CCSGG 1 cut(s) 399
Bsa29I ATCGAT 1 cut(s) 688
BsaJI CCNNGG 3 cut(s) 398, 417, 477
Bsc4I CCNNNNNNNGG 2 cut(s) 397, 793
Bse1I ACTGG 2 cut(s) 545, 889
BseBI CCWGG 1 cut(s) 141
BseCI ATCGAT 1 cut(s) 688
BseDI CCNNGG 3 cut(s) 398, 417, 477
BseGI GGATG 4 cut(s) 19, 510, 580, 771
BseLI CCNNNNNNNGG 2 cut(s) 397, 793
BseMII CTCAG 2 cut(s) 27, 696
BseNI ACTGG 2 cut(s) 545, 889
BseXI GCAGC 3 cut(s) 234, 424, 460
BsgI GTGCAG 2 cut(s) 591, 953
BshFI GGCC 1 cut(s) 144
BshNI GGYRCC 2 cut(s) 481, 839
BshVI ATCGAT 1 cut(s) 688
BsiSI CCGG 1 cut(s) 398
BslFI GGGAC 1 cut(s) 417
BslI CCNNNNNNNGG 2 cut(s) 397, 793
BsmFI GGGAC 1 cut(s) 417
BsnI GGCC 1 cut(s) 144
Bsp143I GATC 8 cut(s) 103, 205, 280, 517, 628, 685, 852, 898
BspANI GGCC 1 cut(s) 144
BspCNI CTCAG 2 cut(s) 28, 695
BspDI ATCGAT 1 cut(s) 688
BspHI TCATGA 1 cut(s) 979
BspLI GGNNCC 2 cut(s) 483, 841
BspPI GGATC 2 cut(s) 98, 512
BspT107I GGYRCC 2 cut(s) 481, 839
BsrI ACTGG 2 cut(s) 545, 889
BssECI CCNNGG 3 cut(s) 398, 417, 477
BssMI GATC 8 cut(s) 103, 205, 280, 517, 628, 685, 852, 898
Bst2UI CCWGG 1 cut(s) 141
Bst4CI ACNGT 2 cut(s) 127, 374
BstDEI CTNAG 2 cut(s) 36, 682
BstDSI CCRYGG 1 cut(s) 477
BstF5I GGATG 4 cut(s) 19, 510, 580, 771
BstKTI GATC 8 cut(s) 106, 208, 283, 520, 631, 688, 855, 901
BstMBI GATC 8 cut(s) 103, 205, 280, 517, 628, 685, 852, 898
BstMWI GCNNNNNNNGC 3 cut(s) 244, 434, 479
BstNI CCWGG 1 cut(s) 141
BstSCI CCNGG 2 cut(s) 139, 397
BstV1I GCAGC 3 cut(s) 234, 424, 460
BstX2I RGATCY 3 cut(s) 103, 205, 517
BstXI CCANNNNNNTGG 1 cut(s) 540
BstYI RGATCY 3 cut(s) 103, 205, 517
Bsu15I ATCGAT 1 cut(s) 688
BsuI GTATCC 1 cut(s) 583
BsuRI GGCC 1 cut(s) 144
BsuTUI ATCGAT 1 cut(s) 688
BtgI CCRYGG 1 cut(s) 477
BtsCI GGATG 4 cut(s) 19, 510, 580, 771
BtsIMutI CAGTG 2 cut(s) 123, 538
CciI TCATGA 1 cut(s) 979
Cfr13I GGNCC 1 cut(s) 260
ClaI ATCGAT 1 cut(s) 688
CviAII CATG 5 cut(s) 678, 746, 792, 908, 980
DdeI CTNAG 2 cut(s) 36, 682
DpnI GATC 8 cut(s) 105, 207, 282, 519, 630, 687, 854, 900
DpnII GATC 8 cut(s) 103, 205, 280, 517, 628, 685, 852, 898
DraI TTTAAA 1 cut(s) 924
DraIII CACNNNGTG 1 cut(s) 273
EaeI YGGCCR 1 cut(s) 142
Eco47I GGWCC 1 cut(s) 260
EcoRII CCWGG 1 cut(s) 139
EcoT22I ATGCAT 1 cut(s) 19
FaeI CATG 5 cut(s) 681, 749, 795, 911, 983
FaqI GGGAC 1 cut(s) 417
FatI CATG 5 cut(s) 677, 745, 791, 907, 979
FbaI TGATCA 1 cut(s) 898
Fnu4HI GCNGC 3 cut(s) 248, 438, 474
FokI GGATG 4 cut(s) 26, 497, 587, 778
Fsp4HI GCNGC 3 cut(s) 248, 438, 474
FspBI CTAG 4 cut(s) 338, 392, 515, 621
GluI GCNGC 3 cut(s) 248, 438, 474
HaeIII GGCC 1 cut(s) 144
HapII CCGG 1 cut(s) 398
Hin1II CATG 5 cut(s) 681, 749, 795, 911, 983
HinfI GANTC 3 cut(s) 112, 326, 731
HpaII CCGG 1 cut(s) 398
HphI GGTGA 1 cut(s) 808
Hpy188I TCNGA 5 cut(s) 22, 46, 331, 418, 685
Hpy188III TCNNGA 8 cut(s) 11, 278, 323, 338, 368, 521, 856, 980
Hpy99I CGWCG 1 cut(s) 299
HpyCH4III ACNGT 2 cut(s) 127, 374
HpyCH4IV ACGT 1 cut(s) 297
HpyF10VI GCNNNNNNNGC 3 cut(s) 244, 434, 479
HpyF3I CTNAG 2 cut(s) 36, 682
HpySE526I ACGT 1 cut(s) 297
Hsp92II CATG 5 cut(s) 681, 749, 795, 911, 983
Ksp22I TGATCA 1 cut(s) 898
Kzo9I GATC 8 cut(s) 103, 205, 280, 517, 628, 685, 852, 898
LpnPI CCDG 8 cut(s) 126, 153, 308, 411, 526, 534, 618, 870
Lsp1109I GCAGC 3 cut(s) 234, 424, 460
LweI GCATC 3 cut(s) 4, 26, 973
MaeI CTAG 4 cut(s) 338, 392, 515, 621
MaeII ACGT 1 cut(s) 297
MaeIII GTNAC 1 cut(s) 83
MalI GATC 8 cut(s) 105, 207, 282, 519, 630, 687, 854, 900
MboI GATC 8 cut(s) 103, 205, 280, 517, 628, 685, 852, 898
MboII GAAGA 3 cut(s) 107, 538, 878
MflI RGATCY 3 cut(s) 103, 205, 517
MlsI TGGCCA 1 cut(s) 144
MluCI AATT 8 cut(s) 52, 342, 429, 467, 560, 739, 801, 870
MluNI TGGCCA 1 cut(s) 144
MmeI TCCRAC 1 cut(s) 162
MnlI CCTC 8 cut(s) 39, 223, 412, 443, 483, 802, 955, 987
Mox20I TGGCCA 1 cut(s) 144
Mph1103I ATGCAT 1 cut(s) 19
MroXI GAANNNNTTC 1 cut(s) 345
MscI TGGCCA 1 cut(s) 144
MseI TTAA 5 cut(s) 212, 432, 558, 804, 923
MslI CAYNNNNRTG 1 cut(s) 676
Msp20I TGGCCA 1 cut(s) 144
MspI CCGG 1 cut(s) 398
MspR9I CCNGG 2 cut(s) 141, 399
MvaI CCWGG 1 cut(s) 141
MwoI GCNNNNNNNGC 3 cut(s) 244, 434, 479
NciI CCSGG 1 cut(s) 399
NdeII GATC 8 cut(s) 103, 205, 280, 517, 628, 685, 852, 898
NlaIII CATG 5 cut(s) 681, 749, 795, 911, 983
NlaIV GGNNCC 2 cut(s) 483, 841
NmuCI GTSAC 1 cut(s) 83
NsiI ATGCAT 1 cut(s) 19
PagI TCATGA 1 cut(s) 979
PdmI GAANNNNTTC 1 cut(s) 345
PfeI GAWTC 3 cut(s) 112, 326, 731
PkrI GCNGC 3 cut(s) 249, 439, 475
PshBI ATTAAT 1 cut(s) 804
Psp6I CCWGG 1 cut(s) 139
PspGI CCWGG 1 cut(s) 139
PspN4I GGNNCC 2 cut(s) 483, 841
PspPI GGNCC 1 cut(s) 260
PsuI RGATCY 3 cut(s) 103, 205, 517
RseI CAYNNNNRTG 1 cut(s) 676
SaqAI TTAA 5 cut(s) 212, 432, 558, 804, 923
SatI GCNGC 3 cut(s) 248, 438, 474
Sau3AI GATC 8 cut(s) 103, 205, 280, 517, 628, 685, 852, 898
Sau96I GGNCC 1 cut(s) 260
ScrFI CCNGG 2 cut(s) 141, 399
SfaNI GCATC 3 cut(s) 4, 26, 973
SinI GGWCC 1 cut(s) 260
SmiMI CAYNNNNRTG 1 cut(s) 676
SmlI CTYRAG 2 cut(s) 30, 154
SmoI CTYRAG 2 cut(s) 30, 154
Sse9I AATT 8 cut(s) 52, 342, 429, 467, 560, 739, 801, 870
SspI AATATT 1 cut(s) 256
SspMI CTAG 4 cut(s) 338, 392, 515, 621
StyD4I CCNGG 2 cut(s) 139, 397
TaaI ACNGT 2 cut(s) 127, 374
TaiI ACGT 1 cut(s) 300
TaqI TCGA 2 cut(s) 662, 688
TasI AATT 8 cut(s) 52, 342, 429, 467, 560, 739, 801, 870
TfiI GAWTC 3 cut(s) 112, 326, 731
Tru1I TTAA 5 cut(s) 212, 432, 558, 804, 923
Tru9I TTAA 5 cut(s) 212, 432, 558, 804, 923
TscAI CASTG 2 cut(s) 130, 545
TseFI GTSAC 1 cut(s) 83
TseI GCWGC 3 cut(s) 247, 437, 473
Tsp45I GTSAC 1 cut(s) 83
TspDTI ATGAA 8 cut(s) 39, 375, 398, 538, 666, 837, 891, 896
TspGWI ACGGA 2 cut(s) 587, 702
TspRI CASTG 2 cut(s) 130, 545
VpaK11BI GGWCC 1 cut(s) 260
VspI ATTAAT 1 cut(s) 804
XapI RAATTY 2 cut(s) 342, 467
XbaI TCTAGA 1 cut(s) 337
XmnI GAANNNNTTC 1 cut(s) 345
XspI CTAG 4 cut(s) 338, 392, 515, 621
Zsp2I ATGCAT 1 cut(s) 19
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.